RNA–Protein interactions for RNA: ENST00000433297.2

HMGCS1-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGCS1, Length 3,466 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-202ENST00000433297 ARMT1Q9H993 441 aa12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 LRRC10BA6NIK2 292 aa12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 MOCS3O95396 460 aa12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 XBP1P17861 261 aa12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 MCM7P33993 719 aa12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 CFAP58Q5T655 872 aa12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 SCLT1Q96NL6 688 aa12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 V9GY48 417 aaPredicted RBP12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 DIP2AQ14689 1571 aa12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 NBPF26B4DH59 902 aa12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 E7EVH7 732 aa12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 NCK2O43639 380 aa12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 PRKAB2O43741 272 aa12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 TATP17735 454 aaPredicted RBP12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 LIFRP42702 1097 aa12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 TCIRG1Q13488 830 aa12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 NBPF10Q6P3W6 841 aaKnown RBP12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 LDHAL6AQ6ZMR3 332 aa12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 MICALCLQ6ZW33 695 aa12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 SH3RF1Q7Z6J0 888 aa12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 IFNL3Q8IZI9 196 aa12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 NBPF15Q8N660 670 aa12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 FANCBQ8NB91 859 aa12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 ZKSCAN4Q969J2 545 aaPredicted RBP12.9□□□□□ -0.34
HMGCS1-202ENST00000433297 MBD4O95243 580 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 PLEKP08567 350 aaPredicted RBP12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 ERCC3P19447 782 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 GPTP24298 496 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 LSP1P33241 339 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 KRT2P35908 639 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 TBC1D8BQ0IIM8 1120 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 IFIT5Q13325 482 aaKnown RBP12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 C8orf74Q6P047 294 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 CCDC114Q96M63 670 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 CNNM1Q9NRU3 951 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 KLC4Q9NSK0 619 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 STK36Q9NRP7 1315 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 RPN1P04843 607 aaKnown RBP12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 PHKG2P15735 406 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 PDE6AP16499 860 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 PAFAH1B1P43034 410 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 PMS1P54277 932 aaKnown RBP12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 SF3A3Q12874 501 aaKnown RBP eCLIP12.89□□□□□ -0.352e-6■□□□□ 11.1
HMGCS1-202ENST00000433297 E2F5Q15329 346 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 NAA35Q5VZE5 725 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 TYW1BQ6NUM6 668 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 CREG2Q8IUH2 290 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 NFU1Q9UMS0 254 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 CAPN6Q9Y6Q1 641 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 MINDY4BA8MYZ0 360 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 CHUKO15111 745 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 TACC1O75410 805 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 CIAO1O76071 339 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 FNTAP49354 379 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 EPHB4P54760 987 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 KCTD19Q17RG1 926 aaPredicted RBP12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 CCDC40Q4G0X9 1142 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 CEP85LQ5SZL2 805 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 MAATS1Q7Z4T9 603 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 KIRREL3Q8IZU9 778 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 HELBQ8NG08 1087 aaPredicted RBP12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 ODF2LQ9ULJ1 636 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 SNX12Q9UMY4 172 aa12.89□□□□□ -0.35
HMGCS1-202ENST00000433297 MAP3K15Q6ZN16 1313 aa12.88□□□□□ -0.35
HMGCS1-202ENST00000433297 ZSCAN5CA6NGD5 496 aaPredicted RBP12.88□□□□□ -0.35
HMGCS1-202ENST00000433297 VAV2P52735 878 aa12.88□□□□□ -0.35
HMGCS1-202ENST00000433297 HDLBPQ00341 1268 aaKnown RBP12.88□□□□□ -0.35
HMGCS1-202ENST00000433297 NEDD9Q14511 834 aa12.88□□□□□ -0.35
HMGCS1-202ENST00000433297 AKNAD1Q5T1N1 836 aa12.88□□□□□ -0.35
HMGCS1-202ENST00000433297 SYNE4Q8N205 404 aa12.88□□□□□ -0.35
HMGCS1-202ENST00000433297 MAGEB6Q8N7X4 407 aa12.88□□□□□ -0.35
HMGCS1-202ENST00000433297 ZNF473Q8WTR7 871 aaKnown RBP12.88□□□□□ -0.35
HMGCS1-202ENST00000433297 MS4A14Q96JA4 679 aa12.88□□□□□ -0.35
HMGCS1-202ENST00000433297 BCCIPQ9P287 314 aaKnown RBP eCLIP12.88□□□□□ -0.35
HMGCS1-202ENST00000433297 CAPN11Q9UMQ6 739 aa12.88□□□□□ -0.35
HMGCS1-202ENST00000433297 TACC3Q9Y6A5 838 aa12.88□□□□□ -0.35
HMGCS1-202ENST00000433297 BACH1O14867 736 aa12.88□□□□□ -0.35
HMGCS1-202ENST00000433297 TTC38Q5R3I4 469 aa12.88□□□□□ -0.35
HMGCS1-202ENST00000433297 RPAINQ86UA6 219 aa12.88□□□□□ -0.35
HMGCS1-202ENST00000433297 ZNF654Q8IZM8 581 aa12.88□□□□□ -0.35
HMGCS1-202ENST00000433297 STRBPQ96SI9 672 aaKnown RBP12.88□□□□□ -0.35
HMGCS1-202ENST00000433297 MTRQ99707 1265 aa12.88□□□□□ -0.35
HMGCS1-202ENST00000433297 STIM2Q9P246 746 aa12.88□□□□□ -0.35
HMGCS1-202ENST00000433297 SLC4A4Q9Y6R1 1079 aa12.88□□□□□ -0.35
HMGCS1-202ENST00000433297 GOLGA6L7A0A1B0GV03 622 aa12.87□□□□□ -0.35
HMGCS1-202ENST00000433297 H7C1D1 291 aa12.87□□□□□ -0.35
HMGCS1-202ENST00000433297 USO1O60763 962 aaKnown RBP12.87□□□□□ -0.35
HMGCS1-202ENST00000433297 ZNF658Q5TYW1 1059 aaPredicted RBP12.87□□□□□ -0.35
HMGCS1-202ENST00000433297 TICAM2Q86XR7 235 aa12.87□□□□□ -0.35
HMGCS1-202ENST00000433297 IRF2BP1Q8IU81 584 aa12.87□□□□□ -0.35
HMGCS1-202ENST00000433297 IFNL2Q8IZJ0 200 aa12.87□□□□□ -0.35
HMGCS1-202ENST00000433297 NOC3LQ8WTT2 800 aaKnown RBP12.87□□□□□ -0.35
HMGCS1-202ENST00000433297 DNAJC7Q99615 494 aa12.87□□□□□ -0.35
HMGCS1-202ENST00000433297 BUB1O43683 1085 aa12.87□□□□□ -0.35
HMGCS1-202ENST00000433297 FAM153BP0C7A2 387 aa12.87□□□□□ -0.35
HMGCS1-202ENST00000433297 CARSP49589 748 aaKnown RBP12.87□□□□□ -0.35
HMGCS1-202ENST00000433297 GUCY2DQ02846 1103 aa12.87□□□□□ -0.35
HMGCS1-202ENST00000433297 FAM153CQ494X1 144 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms