RNA–Protein interactions for RNA: ENST00000431461.1

CDC40-204, Transcript of cell division cycle 40, humanhuman

TSL 3

Gene CDC40, Length 400 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40-204ENST00000431461 FKTNO75072 461 aa3.7□□□□□ -1.82
CDC40-204ENST00000431461 P4HBP07237 508 aaKnown RBP3.7□□□□□ -1.82
CDC40-204ENST00000431461 LIMS1P48059 325 aa3.7□□□□□ -1.82
CDC40-204ENST00000431461 TNNI2P48788 182 aa3.7□□□□□ -1.82
CDC40-204ENST00000431461 SLURP1P55000 103 aa3.7□□□□□ -1.82
CDC40-204ENST00000431461 MAP3K11Q16584 847 aa3.7□□□□□ -1.82
CDC40-204ENST00000431461 CLEC16AQ2KHT3 1053 aa3.7□□□□□ -1.82
CDC40-204ENST00000431461 IGDCC3Q8IVU1 814 aa3.7□□□□□ -1.82
CDC40-204ENST00000431461 SYTL5Q8TDW5 730 aaPredicted RBP3.7□□□□□ -1.82
CDC40-204ENST00000431461 CCDC74BQ96LY2 380 aa3.7□□□□□ -1.82
CDC40-204ENST00000431461 NOC4LQ9BVI4 516 aaKnown RBP3.7□□□□□ -1.82
CDC40-204ENST00000431461 USP40Q9NVE5 1235 aa3.7□□□□□ -1.82
CDC40-204ENST00000431461 SMPD4Q9NXE4 827 aa3.7□□□□□ -1.82
CDC40-204ENST00000431461 FAM221AA4D161 298 aa3.69□□□□□ -1.82
CDC40-204ENST00000431461 NUDT19A8MXV4 375 aa3.69□□□□□ -1.82
CDC40-204ENST00000431461 CHURC1-FNTBB4DL54 471 aa3.69□□□□□ -1.82
CDC40-204ENST00000431461 PRPF40AO75400 957 aaKnown RBP3.69□□□□□ -1.82
CDC40-204ENST00000431461 ITGB3P05106 788 aa3.69□□□□□ -1.82
CDC40-204ENST00000431461 ERVFRD-1P60508 538 aa3.69□□□□□ -1.82
CDC40-204ENST00000431461 CRB2Q5IJ48 1285 aa3.69□□□□□ -1.82
CDC40-204ENST00000431461 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.69□□□□□ -1.82
CDC40-204ENST00000431461 ZPBP2Q6X784 338 aa3.69□□□□□ -1.82
CDC40-204ENST00000431461 LDHDQ86WU2 507 aa3.69□□□□□ -1.82
CDC40-204ENST00000431461 DAGLBQ8NCG7 672 aa3.69□□□□□ -1.82
CDC40-204ENST00000431461 LINC00116Q8NCU8 138 aa3.69□□□□□ -1.82
CDC40-204ENST00000431461 MAP6Q96JE9 813 aa3.69□□□□□ -1.82
CDC40-204ENST00000431461 PLCD4Q9BRC7 762 aa3.69□□□□□ -1.82
CDC40-204ENST00000431461 MRIQ9BWK5 157 aa3.69□□□□□ -1.82
CDC40-204ENST00000431461 HDAC8Q9BY41 377 aa3.69□□□□□ -1.82
CDC40-204ENST00000431461 FOXP3Q9BZS1 431 aa3.69□□□□□ -1.82
CDC40-204ENST00000431461 ASCC2Q9H1I8 757 aaPredicted RBP3.69□□□□□ -1.82
CDC40-204ENST00000431461 TLR6Q9Y2C9 796 aa3.69□□□□□ -1.82
CDC40-204ENST00000431461 FFAR3O14843 346 aa3.68□□□□□ -1.82
CDC40-204ENST00000431461 BUB1BO60566 1050 aaPredicted RBP3.68□□□□□ -1.82
CDC40-204ENST00000431461 MPOP05164 745 aa3.68□□□□□ -1.82
CDC40-204ENST00000431461 ST13P50502 369 aaKnown RBP3.68□□□□□ -1.82
CDC40-204ENST00000431461 TRIM26Q12899 539 aaPredicted RBP3.68□□□□□ -1.82
CDC40-204ENST00000431461 NMIQ13287 307 aaPredicted RBP3.68□□□□□ -1.82
CDC40-204ENST00000431461 NT5DC1Q5TFE4 455 aa3.68□□□□□ -1.82
CDC40-204ENST00000431461 BNC2Q6ZN30 1099 aaPredicted RBP3.68□□□□□ -1.82
CDC40-204ENST00000431461 ZNF655Q8N720 491 aaPredicted RBP3.68□□□□□ -1.82
CDC40-204ENST00000431461 PHC3Q8NDX5 983 aa3.68□□□□□ -1.82
CDC40-204ENST00000431461 GATAD2BQ8WXI9 593 aa3.68□□□□□ -1.82
CDC40-204ENST00000431461 DDX1Q92499 740 aaKnown RBP3.68□□□□□ -1.82
CDC40-204ENST00000431461 SAMD11Q96NU1 681 aa3.68□□□□□ -1.82
CDC40-204ENST00000431461 SCAND2PQ9GZW5 306 aaPredicted RBP3.68□□□□□ -1.82
CDC40-204ENST00000431461 REV1Q9UBZ9 1251 aa3.68□□□□□ -1.82
CDC40-204ENST00000431461 PCDHA5Q9Y5H7 936 aa3.68□□□□□ -1.82
CDC40-204ENST00000431461 TMEM82A0PJX8 343 aa3.67□□□□□ -1.82
CDC40-204ENST00000431461 BPNT1O95861 308 aa3.67□□□□□ -1.82
CDC40-204ENST00000431461 GBP1P32455 592 aa3.67□□□□□ -1.82
CDC40-204ENST00000431461 ACVRL1P37023 503 aa3.67□□□□□ -1.82
CDC40-204ENST00000431461 LMNB2Q03252 620 aa3.67□□□□□ -1.82
CDC40-204ENST00000431461 CAMK2GQ13555 558 aaPredicted RBP3.67□□□□□ -1.82
CDC40-204ENST00000431461 RAB3GAP1Q15042 981 aa3.67□□□□□ -1.82
CDC40-204ENST00000431461 TAF1CQ15572 869 aaPredicted RBP3.67□□□□□ -1.82
CDC40-204ENST00000431461 MEI1Q5TIA1 1274 aa3.67□□□□□ -1.82
CDC40-204ENST00000431461 TCTN2Q96GX1 697 aa3.67□□□□□ -1.82
CDC40-204ENST00000431461 HHIPL1Q96JK4 782 aa3.67□□□□□ -1.82
CDC40-204ENST00000431461 RBM15Q96T37 977 aaKnown RBP eCLIP3.67□□□□□ -1.82
CDC40-204ENST00000431461 SPATA25Q9BR10 227 aa3.67□□□□□ -1.82
CDC40-204ENST00000431461 PODXL2Q9NZ53 605 aa3.67□□□□□ -1.82
CDC40-204ENST00000431461 KLHL14Q9P2G3 628 aa3.67□□□□□ -1.82
CDC40-204ENST00000431461 TCFL5Q9UL49 500 aa3.67□□□□□ -1.82
CDC40-204ENST00000431461 IRS2Q9Y4H2 1338 aa3.67□□□□□ -1.82
CDC40-204ENST00000431461 USP31Q70CQ4 1352 aa3.66□□□□□ -1.82
CDC40-204ENST00000431461 SSU72P8A0A1W2PR75 194 aa3.66□□□□□ -1.82
CDC40-204ENST00000431461 RGS13O14921 159 aa3.66□□□□□ -1.82
CDC40-204ENST00000431461 TACR2P21452 398 aa3.66□□□□□ -1.82
CDC40-204ENST00000431461 MFAP1P55081 439 aaKnown RBP3.66□□□□□ -1.82
CDC40-204ENST00000431461 PCBP3P57721 371 aaKnown RBP3.66□□□□□ -1.82
CDC40-204ENST00000431461 RTP1P59025 263 aa3.66□□□□□ -1.82
CDC40-204ENST00000431461 LAPTM5Q13571 262 aa3.66□□□□□ -1.82
CDC40-204ENST00000431461 ZNF326Q5BKZ1 582 aaKnown RBP3.66□□□□□ -1.82
CDC40-204ENST00000431461 GALNT18Q6P9A2 607 aa3.66□□□□□ -1.82
CDC40-204ENST00000431461 USP51Q70EK9 711 aa3.66□□□□□ -1.82
CDC40-204ENST00000431461 PHACTR4Q8IZ21 702 aa3.66□□□□□ -1.82
CDC40-204ENST00000431461 KIF2CQ99661 725 aa3.66□□□□□ -1.82
CDC40-204ENST00000431461 RNF19AQ9NV58 838 aa3.66□□□□□ -1.82
CDC40-204ENST00000431461 TNFRSF10DQ9UBN6 386 aa3.66□□□□□ -1.82
CDC40-204ENST00000431461 KLHL3Q9UH77 587 aa3.66□□□□□ -1.82
CDC40-204ENST00000431461 POLR3KQ9Y2Y1 108 aaPredicted RBP3.66□□□□□ -1.82
CDC40-204ENST00000431461 WTIPA6NIX2 430 aaPredicted RBP3.65□□□□□ -1.83
CDC40-204ENST00000431461 FADS2P1A8MWK0 482 aa3.65□□□□□ -1.83
CDC40-204ENST00000431461 DNAJA2O60884 412 aa3.65□□□□□ -1.83
CDC40-204ENST00000431461 HTR3BO95264 441 aa3.65□□□□□ -1.83
CDC40-204ENST00000431461 F13A1P00488 732 aa3.65□□□□□ -1.83
CDC40-204ENST00000431461 PF4P02776 101 aa3.65□□□□□ -1.83
CDC40-204ENST00000431461 C6P13671 934 aa3.65□□□□□ -1.83
CDC40-204ENST00000431461 ZNF20P17024 532 aa3.65□□□□□ -1.83
CDC40-204ENST00000431461 CNR2P34972 360 aa3.65□□□□□ -1.83
CDC40-204ENST00000431461 ARL4AP40617 200 aa3.65□□□□□ -1.83
CDC40-204ENST00000431461 ZNF200P98182 395 aaPredicted RBP3.65□□□□□ -1.83
CDC40-204ENST00000431461 PURAQ00577 322 aaKnown RBP3.65□□□□□ -1.83
CDC40-204ENST00000431461 CBX2Q14781 532 aaPredicted RBP3.65□□□□□ -1.83
CDC40-204ENST00000431461 NBPF9Q3BBW0 867 aa3.65□□□□□ -1.83
CDC40-204ENST00000431461 ZFPM1Q8IX07 1006 aa3.65□□□□□ -1.83
CDC40-204ENST00000431461 DUSP9Q99956 384 aaKnown RBP3.65□□□□□ -1.83
CDC40-204ENST00000431461 KRTAP3-1Q9BYR8 98 aa3.65□□□□□ -1.83
CDC40-204ENST00000431461 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms