RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 ATP8A2Q9NTI2 1148 aa15.5■□□□□ 0.07
LINC00339-202ENST00000416769 SYNRGQ9UMZ2 1314 aa15.49■□□□□ 0.07
LINC00339-202ENST00000416769 SLC25A27O95847 323 aa15.49■□□□□ 0.07
LINC00339-202ENST00000416769 NEFLP07196 543 aa15.49■□□□□ 0.07
LINC00339-202ENST00000416769 RASA1P20936 1047 aa15.49■□□□□ 0.07
LINC00339-202ENST00000416769 KCTD2Q14681 263 aa15.49■□□□□ 0.07
LINC00339-202ENST00000416769 C1orf53Q5VUE5 145 aa15.49■□□□□ 0.07
LINC00339-202ENST00000416769 CHMP4CQ96CF2 233 aa15.49■□□□□ 0.07
LINC00339-202ENST00000416769 RNPC3Q96LT9 517 aaKnown RBP15.49■□□□□ 0.07
LINC00339-202ENST00000416769 CCDC17Q96LX7 622 aa15.49■□□□□ 0.07
LINC00339-202ENST00000416769 SH2D4AQ9H788 454 aa15.49■□□□□ 0.07
LINC00339-202ENST00000416769 SLC5A4Q9NY91 659 aa15.49■□□□□ 0.07
LINC00339-202ENST00000416769 DDX49Q9Y6V7 483 aaKnown RBP15.49■□□□□ 0.07
LINC00339-202ENST00000416769 ROBO3Q96MS0 1386 aa15.49■□□□□ 0.07
LINC00339-202ENST00000416769 KIAA0355O15063 1070 aa15.48■□□□□ 0.07
LINC00339-202ENST00000416769 NDUFB10O96000 172 aa15.48■□□□□ 0.07
LINC00339-202ENST00000416769 IRX6P78412 446 aaPredicted RBP15.48■□□□□ 0.07
LINC00339-202ENST00000416769 SMAD3P84022 425 aaKnown RBP15.48■□□□□ 0.07
LINC00339-202ENST00000416769 FAAP100Q0VG06 881 aa15.48■□□□□ 0.07
LINC00339-202ENST00000416769 UBE3CQ15386 1083 aa15.48■□□□□ 0.07
LINC00339-202ENST00000416769 SNRNP48Q6IEG0 339 aaKnown RBP15.48■□□□□ 0.07
LINC00339-202ENST00000416769 RPAP2Q8IXW5 612 aaPredicted RBP15.48■□□□□ 0.07
LINC00339-202ENST00000416769 KANSL2Q9H9L4 492 aa15.48■□□□□ 0.07
LINC00339-202ENST00000416769 EPB41L4AQ9HCS5 686 aaPredicted RBP15.48■□□□□ 0.07
LINC00339-202ENST00000416769 PRDM6Q9NQX0 595 aa15.48■□□□□ 0.07
LINC00339-202ENST00000416769 ZHX1Q9UKY1 873 aaPredicted RBP15.48■□□□□ 0.07
LINC00339-202ENST00000416769 MYH4Q9Y623 1939 aa15.48■□□□□ 0.07
LINC00339-202ENST00000416769 GRXCR1A8MXD5 290 aa15.47■□□□□ 0.07
LINC00339-202ENST00000416769 PRDM1O75626 825 aa15.47■□□□□ 0.07
LINC00339-202ENST00000416769 FOSL2P15408 326 aa15.47■□□□□ 0.07
LINC00339-202ENST00000416769 ACLYP53396 1101 aa15.47■□□□□ 0.07
LINC00339-202ENST00000416769 GRIN2CQ14957 1233 aa15.47■□□□□ 0.07
LINC00339-202ENST00000416769 CCSAPQ6IQ19 270 aaPredicted RBP15.47■□□□□ 0.07
LINC00339-202ENST00000416769 CPXCR1Q8N123 301 aa15.47■□□□□ 0.07
LINC00339-202ENST00000416769 EXOC6Q8TAG9 804 aa15.47■□□□□ 0.07
LINC00339-202ENST00000416769 STRBPQ96SI9 672 aaKnown RBP15.47■□□□□ 0.07
LINC00339-202ENST00000416769 SLF1Q9BQI6 1058 aa15.47■□□□□ 0.07
LINC00339-202ENST00000416769 RAVER2Q9HCJ3 691 aaKnown RBP15.47■□□□□ 0.07
LINC00339-202ENST00000416769 GOPCQ9HD26 462 aa15.47■□□□□ 0.07
LINC00339-202ENST00000416769 DNAJC25-GNG10A0A024R161 153 aa15.46■□□□□ 0.07
LINC00339-202ENST00000416769 GSG1L2A8MUP6 293 aa15.46■□□□□ 0.07
LINC00339-202ENST00000416769 RAB11FIP3O75154 756 aa15.46■□□□□ 0.07
LINC00339-202ENST00000416769 AKR1A1P14550 325 aa15.46■□□□□ 0.07
LINC00339-202ENST00000416769 RAG1P15918 1043 aa15.46■□□□□ 0.07
LINC00339-202ENST00000416769 KCNA10Q16322 511 aa15.46■□□□□ 0.07
LINC00339-202ENST00000416769 C16orf59Q7L2K0 433 aa15.46■□□□□ 0.07
LINC00339-202ENST00000416769 RNF180Q86T96 592 aa15.46■□□□□ 0.07
LINC00339-202ENST00000416769 KLHDC9Q8NEP7 349 aa15.46■□□□□ 0.07
LINC00339-202ENST00000416769 OSBP2Q969R2 916 aa15.46■□□□□ 0.07
LINC00339-202ENST00000416769 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.46■□□□□ 0.07
LINC00339-202ENST00000416769 TMEM39AQ9NV64 488 aa15.46■□□□□ 0.07
LINC00339-202ENST00000416769 NRBP1Q9UHY1 535 aa15.46■□□□□ 0.07
LINC00339-202ENST00000416769 TACC3Q9Y6A5 838 aa15.46■□□□□ 0.07
LINC00339-202ENST00000416769 MINDY4BA8MYZ0 360 aa15.45■□□□□ 0.06
LINC00339-202ENST00000416769 F5H6K3 240 aa15.45■□□□□ 0.06
LINC00339-202ENST00000416769 HMMRO75330 724 aa15.45■□□□□ 0.06
LINC00339-202ENST00000416769 PBX2P40425 430 aa15.45■□□□□ 0.06
LINC00339-202ENST00000416769 FPGSQ05932 587 aa15.45■□□□□ 0.06
LINC00339-202ENST00000416769 KLRC3Q07444 240 aa15.45■□□□□ 0.06
LINC00339-202ENST00000416769 ERICH6BQ5W0A0 696 aa15.45■□□□□ 0.06
LINC00339-202ENST00000416769 RASGRP2Q7LDG7 609 aa15.45■□□□□ 0.06
LINC00339-202ENST00000416769 LRRC47Q8N1G4 583 aaKnown RBP15.45■□□□□ 0.06
LINC00339-202ENST00000416769 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.45■□□□□ 0.06
LINC00339-202ENST00000416769 TEX13BQ9BXU2 312 aa15.45■□□□□ 0.06
LINC00339-202ENST00000416769 STARD7Q9NQZ5 370 aa15.45■□□□□ 0.06
LINC00339-202ENST00000416769 CNPY2Q9Y2B0 182 aa15.45■□□□□ 0.06
LINC00339-202ENST00000416769 DIS3Q9Y2L1 958 aaKnown RBP15.45■□□□□ 0.06
LINC00339-202ENST00000416769 IGKV6D-41A0A0C4DH26 115 aa15.44■□□□□ 0.06
LINC00339-202ENST00000416769 RBAK-RBAKDNI3L0D1 243 aa15.44■□□□□ 0.06
LINC00339-202ENST00000416769 M0R2C6 588 aa15.44■□□□□ 0.06
LINC00339-202ENST00000416769 DNAJB2P25686 324 aa15.44■□□□□ 0.06
LINC00339-202ENST00000416769 KIFC2Q96AC6 838 aa15.44■□□□□ 0.06
LINC00339-202ENST00000416769 TBX21Q9UL17 535 aa15.44■□□□□ 0.06
LINC00339-202ENST00000416769 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.43■□□□□ 0.06
LINC00339-202ENST00000416769 CTAGE5O15320 804 aa15.43■□□□□ 0.06
LINC00339-202ENST00000416769 ACRP10323 421 aa15.43■□□□□ 0.06
LINC00339-202ENST00000416769 CNTN2Q02246 1040 aa15.43■□□□□ 0.06
LINC00339-202ENST00000416769 ANKRD33Q7Z3H0 272 aa15.43■□□□□ 0.06
LINC00339-202ENST00000416769 AMOTL1Q8IY63 956 aa15.43■□□□□ 0.06
LINC00339-202ENST00000416769 DDX11Q96FC9 970 aa15.43■□□□□ 0.06
LINC00339-202ENST00000416769 PPP1R12CQ9BZL4 782 aa15.43■□□□□ 0.06
LINC00339-202ENST00000416769 HOMER2Q9NSB8 354 aa15.43■□□□□ 0.06
LINC00339-202ENST00000416769 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.43■□□□□ 0.06
LINC00339-202ENST00000416769 ARPP21Q9UBL0 812 aaPredicted RBP15.43■□□□□ 0.06
LINC00339-202ENST00000416769 CLIP2Q9UDT6 1046 aa15.43■□□□□ 0.06
LINC00339-202ENST00000416769 C6orf222P0C671 652 aaPredicted RBP15.42■□□□□ 0.06
LINC00339-202ENST00000416769 SNAP25P60880 206 aa15.42■□□□□ 0.06
LINC00339-202ENST00000416769 BEX3Q00994 111 aa15.42■□□□□ 0.06
LINC00339-202ENST00000416769 SBK1Q52WX2 424 aa15.42■□□□□ 0.06
LINC00339-202ENST00000416769 TMEM63BQ5T3F8 832 aa15.42■□□□□ 0.06
LINC00339-202ENST00000416769 MAMDC4Q6UXC1 1216 aa15.42■□□□□ 0.06
LINC00339-202ENST00000416769 CEP95Q96GE4 821 aa15.42■□□□□ 0.06
LINC00339-202ENST00000416769 SEC62Q99442 399 aaKnown RBP15.42■□□□□ 0.06
LINC00339-202ENST00000416769 KATNBL1Q9H079 304 aa15.42■□□□□ 0.06
LINC00339-202ENST00000416769 NYAP2Q9P242 653 aa15.42■□□□□ 0.06
LINC00339-202ENST00000416769 FAM184BQ9ULE4 1060 aa15.42■□□□□ 0.06
LINC00339-202ENST00000416769 LRRC37A2A6NM11 1700 aa15.42■□□□□ 0.06
LINC00339-202ENST00000416769 GBF1Q92538 1859 aa15.42■□□□□ 0.06
LINC00339-202ENST00000416769 ASTN1O14525 1302 aa15.42■□□□□ 0.06
LINC00339-202ENST00000416769 UMODL1Q5DID0 1318 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms