RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 FGRP09769 529 aa16.98■□□□□ 0.31
USP4-203ENST00000415188 PTGS1P23219 599 aa16.98■□□□□ 0.31
USP4-203ENST00000415188 SOX10P56693 466 aa16.98■□□□□ 0.31
USP4-203ENST00000415188 TPM4P67936 248 aa16.98■□□□□ 0.31
USP4-203ENST00000415188 NFIAQ12857 509 aa16.98■□□□□ 0.31
USP4-203ENST00000415188 RRP12Q5JTH9 1297 aaKnown RBP16.98■□□□□ 0.31
USP4-203ENST00000415188 DNTTIP2Q5QJE6 756 aaKnown RBP16.98■□□□□ 0.31
USP4-203ENST00000415188 CCDC186Q7Z3E2 898 aa16.98■□□□□ 0.31
USP4-203ENST00000415188 ZNF654Q8IZM8 581 aa16.98■□□□□ 0.31
USP4-203ENST00000415188 MIGA1Q8NAN2 632 aa16.98■□□□□ 0.31
USP4-203ENST00000415188 AIFM3Q96NN9 605 aa16.98■□□□□ 0.31
USP4-203ENST00000415188 TOMM22Q9NS69 142 aa16.98■□□□□ 0.31
USP4-203ENST00000415188 CSADQ9Y600 493 aa16.98■□□□□ 0.31
USP4-203ENST00000415188 UQCRHLA0A096LP55 91 aa16.97■□□□□ 0.31
USP4-203ENST00000415188 TESPA1A2RU30 521 aaPredicted RBP16.97■□□□□ 0.31
USP4-203ENST00000415188 SMTNL1A8MU46 457 aa16.97■□□□□ 0.31
USP4-203ENST00000415188 RRP9O43818 475 aaKnown RBP16.97■□□□□ 0.31
USP4-203ENST00000415188 UQCRHP07919 91 aa16.97■□□□□ 0.31
USP4-203ENST00000415188 RXRAP19793 462 aa16.97■□□□□ 0.31
USP4-203ENST00000415188 SYKP43405 635 aa16.97■□□□□ 0.31
USP4-203ENST00000415188 MLLT1Q03111 559 aaPredicted RBP16.97■□□□□ 0.31
USP4-203ENST00000415188 TCP10Q12799 353 aa16.97■□□□□ 0.31
USP4-203ENST00000415188 RESP18Q5W5W9 173 aa16.97■□□□□ 0.31
USP4-203ENST00000415188 MIGA2Q7L4E1 593 aa16.97■□□□□ 0.31
USP4-203ENST00000415188 NOSTRINQ8IVI9 506 aa16.97■□□□□ 0.31
USP4-203ENST00000415188 ZKSCAN4Q969J2 545 aaPredicted RBP16.97■□□□□ 0.31
USP4-203ENST00000415188 OTUD5Q96G74 571 aa16.97■□□□□ 0.31
USP4-203ENST00000415188 MS4A4AQ96JQ5 239 aa16.97■□□□□ 0.31
USP4-203ENST00000415188 WRNIP1Q96S55 665 aa16.97■□□□□ 0.31
USP4-203ENST00000415188 RNF26Q9BY78 433 aaPredicted RBP16.97■□□□□ 0.31
USP4-203ENST00000415188 GJB4Q9NTQ9 266 aa16.97■□□□□ 0.31
USP4-203ENST00000415188 ABCF2Q9UG63 623 aa16.97■□□□□ 0.31
USP4-203ENST00000415188 SNCAIPQ9Y6H5 919 aa16.97■□□□□ 0.31
USP4-203ENST00000415188 CALM1P0DP23 149 aa16.96■□□□□ 0.31
USP4-203ENST00000415188 CALM2P0DP24 149 aa16.96■□□□□ 0.31
USP4-203ENST00000415188 CALM3P0DP25 149 aa16.96■□□□□ 0.31
USP4-203ENST00000415188 CRHR2Q13324 411 aa16.96■□□□□ 0.31
USP4-203ENST00000415188 SEC23AQ15436 765 aa16.96■□□□□ 0.31
USP4-203ENST00000415188 RILPL1Q5EBL4 403 aa16.96■□□□□ 0.31
USP4-203ENST00000415188 NBPF11Q86T75 865 aa16.96■□□□□ 0.31
USP4-203ENST00000415188 CCDC144CPQ8IYA2 1237 aa16.96■□□□□ 0.31
USP4-203ENST00000415188 CRACR2BQ8N4Y2 399 aaPredicted RBP16.96■□□□□ 0.31
USP4-203ENST00000415188 FANCBQ8NB91 859 aa16.96■□□□□ 0.31
USP4-203ENST00000415188 MYRIPQ8NFW9 859 aa16.96■□□□□ 0.31
USP4-203ENST00000415188 BRI3BPQ8WY22 251 aa16.96■□□□□ 0.31
USP4-203ENST00000415188 MYL10Q9BUA6 226 aa16.96■□□□□ 0.31
USP4-203ENST00000415188 INCENPQ9NQS7 918 aa16.96■□□□□ 0.31
USP4-203ENST00000415188 USP40Q9NVE5 1235 aa16.96■□□□□ 0.31
USP4-203ENST00000415188 RBM28Q9NW13 759 aaKnown RBP16.96■□□□□ 0.31
USP4-203ENST00000415188 PYCARDQ9ULZ3 195 aa16.96■□□□□ 0.31
USP4-203ENST00000415188 MYH2Q9UKX2 1941 aa16.96■□□□□ 0.31
USP4-203ENST00000415188 BAZ2AQ9UIF9 1905 aaKnown RBP16.95■□□□□ 0.3
USP4-203ENST00000415188 MROH7-TTC4A0A0A0MT08 1334 aa16.95■□□□□ 0.3
USP4-203ENST00000415188 WDHD1O75717 1129 aaPredicted RBP16.95■□□□□ 0.3
USP4-203ENST00000415188 XBP1P17861 261 aa16.95■□□□□ 0.3
USP4-203ENST00000415188 PKN2Q16513 984 aaKnown RBP16.95■□□□□ 0.3
USP4-203ENST00000415188 ADGRA1Q86SQ6 560 aa16.95■□□□□ 0.3
USP4-203ENST00000415188 FAM151AQ8WW52 585 aa16.95■□□□□ 0.3
USP4-203ENST00000415188 FAM198AQ9UFP1 575 aa16.95■□□□□ 0.3
USP4-203ENST00000415188 HOOK1Q9UJC3 728 aaKnown RBP16.95■□□□□ 0.3
USP4-203ENST00000415188 TUBE1Q9UJT0 475 aa16.95■□□□□ 0.3
USP4-203ENST00000415188 CEP131Q9UPN4 1083 aa16.95■□□□□ 0.3
USP4-203ENST00000415188 TNKSO95271 1327 aa16.94■□□□□ 0.3
USP4-203ENST00000415188 CCL15-CCL14A0A0B4J2E2 113 aa16.94■□□□□ 0.3
USP4-203ENST00000415188 SPDYE5A6NIY4 337 aa16.94■□□□□ 0.3
USP4-203ENST00000415188 IKBKBO14920 756 aa16.94■□□□□ 0.3
USP4-203ENST00000415188 CCL15Q16663 113 aa16.94■□□□□ 0.3
USP4-203ENST00000415188 ZFPM1Q8IX07 1006 aa16.94■□□□□ 0.3
USP4-203ENST00000415188 AOPEPQ8N6M6 819 aa16.94■□□□□ 0.3
USP4-203ENST00000415188 KRI1Q8N9T8 703 aaKnown RBP16.94■□□□□ 0.3
USP4-203ENST00000415188 MAP7D2Q96T17 732 aa16.94■□□□□ 0.3
USP4-203ENST00000415188 IMPACTQ9P2X3 320 aa16.94■□□□□ 0.3
USP4-203ENST00000415188 MINDY4BA8MYZ0 360 aa16.93■□□□□ 0.3
USP4-203ENST00000415188 ORC4O43929 436 aa16.93■□□□□ 0.3
USP4-203ENST00000415188 DDAH1O94760 285 aa16.93■□□□□ 0.3
USP4-203ENST00000415188 INPP5BP32019 993 aa16.93■□□□□ 0.3
USP4-203ENST00000415188 GTF2A2P52657 109 aa16.93■□□□□ 0.3
USP4-203ENST00000415188 GSDMDP57764 484 aa16.93■□□□□ 0.3
USP4-203ENST00000415188 DCAF15Q66K64 600 aa16.93■□□□□ 0.3
USP4-203ENST00000415188 SPTY2D1Q68D10 685 aaPredicted RBP16.93■□□□□ 0.3
USP4-203ENST00000415188 IQCA1Q86XH1 822 aa16.93■□□□□ 0.3
USP4-203ENST00000415188 DZIP1Q86YF9 867 aaKnown RBP16.93■□□□□ 0.3
USP4-203ENST00000415188 DIS3L2Q8IYB7 885 aaKnown RBP16.93■□□□□ 0.3
USP4-203ENST00000415188 ZNF579Q8NAF0 562 aaKnown RBP16.93■□□□□ 0.3
USP4-203ENST00000415188 HOOK2Q96ED9 719 aa16.93■□□□□ 0.3
USP4-203ENST00000415188 ZSCAN10Q96SZ4 725 aaPredicted RBP16.93■□□□□ 0.3
USP4-203ENST00000415188 ZNF341Q9BYN7 854 aa16.93■□□□□ 0.3
USP4-203ENST00000415188 CRNKL1Q9BZJ0 848 aaKnown RBP16.93■□□□□ 0.3
USP4-203ENST00000415188 ATP8A2Q9NTI2 1148 aa16.93■□□□□ 0.3
USP4-203ENST00000415188 GAKO14976 1311 aa16.93■□□□□ 0.3
USP4-203ENST00000415188 MARCKSP29966 332 aaPredicted RBP16.93■□□□□ 0.3
USP4-203ENST00000415188 GTF2F1P35269 517 aaKnown RBP eCLIP16.93■□□□□ 0.3
USP4-203ENST00000415188 AKAP17AQ02040 695 aaKnown RBP16.93■□□□□ 0.3
USP4-203ENST00000415188 FBXO46Q6PJ61 603 aaPredicted RBP16.93■□□□□ 0.3
USP4-203ENST00000415188 SHC4Q6S5L8 630 aa16.93■□□□□ 0.3
USP4-203ENST00000415188 MTERF4Q7Z6M4 381 aaKnown RBP16.93■□□□□ 0.3
USP4-203ENST00000415188 CATIPQ7Z7H3 387 aa16.93■□□□□ 0.3
USP4-203ENST00000415188 ERO1BQ86YB8 467 aa16.93■□□□□ 0.3
USP4-203ENST00000415188 CD99L2Q8TCZ2 262 aa16.93■□□□□ 0.3
USP4-203ENST00000415188 SDR42E1Q8WUS8 393 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms