RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 RRP36Q96EU6 259 aaKnown RBP16.5■□□□□ 0.23
SF3B1-204ENST00000414963 WNK4Q96J92 1243 aa16.5■□□□□ 0.23
SF3B1-204ENST00000414963 CPVLQ9H3G5 476 aa16.5■□□□□ 0.23
SF3B1-204ENST00000414963 TLL2Q9Y6L7 1015 aa16.5■□□□□ 0.23
SF3B1-204ENST00000414963 PPFIA3O75145 1194 aa16.49■□□□□ 0.23
SF3B1-204ENST00000414963 ZBTB48P10074 688 aaPredicted RBP16.49■□□□□ 0.23
SF3B1-204ENST00000414963 SCG2P13521 617 aa16.49■□□□□ 0.23
SF3B1-204ENST00000414963 SNAPC2Q13487 334 aa16.49■□□□□ 0.23
SF3B1-204ENST00000414963 MOGSQ13724 837 aa16.49■□□□□ 0.23
SF3B1-204ENST00000414963 SPRYD7Q5W111 196 aa16.49■□□□□ 0.23
SF3B1-204ENST00000414963 FASTKD5Q7L8L6 764 aaKnown RBP16.49■□□□□ 0.23
SF3B1-204ENST00000414963 HHIPL1Q96JK4 782 aa16.49■□□□□ 0.23
SF3B1-204ENST00000414963 ALG1Q9BT22 464 aa16.49■□□□□ 0.23
SF3B1-204ENST00000414963 RPAP3Q9H6T3 665 aaPredicted RBP16.49■□□□□ 0.23
SF3B1-204ENST00000414963 SH3GLB2Q9NR46 395 aa16.49■□□□□ 0.23
SF3B1-204ENST00000414963 CHMP5Q9NZZ3 219 aa16.49■□□□□ 0.23
SF3B1-204ENST00000414963 PRR12Q9ULL5 1215 aa16.49■□□□□ 0.23
SF3B1-204ENST00000414963 PNMA6FA0A0J9YX94 578 aa16.48■□□□□ 0.23
SF3B1-204ENST00000414963 TMEM88BA6NKF7 163 aa16.48■□□□□ 0.23
SF3B1-204ENST00000414963 USP17L15C9J2P7 530 aa16.48■□□□□ 0.23
SF3B1-204ENST00000414963 USP17L13C9JLJ4 530 aa16.48■□□□□ 0.23
SF3B1-204ENST00000414963 USP17L11C9JVI0 530 aa16.48■□□□□ 0.23
SF3B1-204ENST00000414963 USP17L18D6R9N7 530 aa16.48■□□□□ 0.23
SF3B1-204ENST00000414963 USP17L22D6RA61 530 aa16.48■□□□□ 0.23
SF3B1-204ENST00000414963 USP17L17D6RBQ6 530 aa16.48■□□□□ 0.23
SF3B1-204ENST00000414963 USP17L19D6RCP7 530 aa16.48■□□□□ 0.23
SF3B1-204ENST00000414963 USP17L20D6RJB6 530 aa16.48■□□□□ 0.23
SF3B1-204ENST00000414963 FDX1P10109 184 aa16.48■□□□□ 0.23
SF3B1-204ENST00000414963 HOXA7P31268 230 aaPredicted RBP16.48■□□□□ 0.23
SF3B1-204ENST00000414963 NUCB2P80303 420 aa16.48■□□□□ 0.23
SF3B1-204ENST00000414963 USP17L24Q0WX57 530 aa16.48■□□□□ 0.23
SF3B1-204ENST00000414963 DGKZQ13574 1117 aa16.48■□□□□ 0.23
SF3B1-204ENST00000414963 CATSPERGQ6ZRH7 1159 aa16.48■□□□□ 0.23
SF3B1-204ENST00000414963 PRPF38AQ8NAV1 312 aaKnown RBP16.48■□□□□ 0.23
SF3B1-204ENST00000414963 FBXO18Q8NFZ0 1043 aa16.48■□□□□ 0.23
SF3B1-204ENST00000414963 PIGSQ96S52 555 aa16.48■□□□□ 0.23
SF3B1-204ENST00000414963 SLF1Q9BQI6 1058 aa16.48■□□□□ 0.23
SF3B1-204ENST00000414963 VAT1LQ9HCJ6 419 aa16.48■□□□□ 0.23
SF3B1-204ENST00000414963 hCG_1984214I3L0E3 225 aa16.47■□□□□ 0.23
SF3B1-204ENST00000414963 ZBTB5O15062 677 aa16.47■□□□□ 0.23
SF3B1-204ENST00000414963 STX6O43752 255 aa16.47■□□□□ 0.23
SF3B1-204ENST00000414963 GTF2A2P52657 109 aa16.47■□□□□ 0.23
SF3B1-204ENST00000414963 ZNF713Q8N859 430 aaPredicted RBP16.47■□□□□ 0.23
SF3B1-204ENST00000414963 MS4A4AQ96JQ5 239 aa16.47■□□□□ 0.23
SF3B1-204ENST00000414963 C8orf76Q96K31 380 aa16.47■□□□□ 0.23
SF3B1-204ENST00000414963 SEC63Q9UGP8 760 aaKnown RBP16.47■□□□□ 0.23
SF3B1-204ENST00000414963 ISY1Q9ULR0 285 aaKnown RBP16.47■□□□□ 0.23
SF3B1-204ENST00000414963 ADAMTS5Q9UNA0 930 aa16.47■□□□□ 0.23
SF3B1-204ENST00000414963 MYPNQ86TC9 1320 aa16.46■□□□□ 0.23
SF3B1-204ENST00000414963 hCG_1642624A0A1W2PR95 340 aa16.46■□□□□ 0.23
SF3B1-204ENST00000414963 BRD1O95696 1058 aa16.46■□□□□ 0.23
SF3B1-204ENST00000414963 CETPP11597 493 aa16.46■□□□□ 0.23
SF3B1-204ENST00000414963 IKQ13123 557 aaPredicted RBP16.46■□□□□ 0.23
SF3B1-204ENST00000414963 COG2Q14746 738 aa16.46■□□□□ 0.23
SF3B1-204ENST00000414963 GPAT2Q6NUI2 795 aa16.46■□□□□ 0.23
SF3B1-204ENST00000414963 RGMBQ6NW40 437 aa16.46■□□□□ 0.23
SF3B1-204ENST00000414963 AIFM3Q96NN9 605 aa16.46■□□□□ 0.23
SF3B1-204ENST00000414963 TANGO6Q9C0B7 1094 aa16.46■□□□□ 0.23
SF3B1-204ENST00000414963 RANBP17Q9H2T7 1088 aaKnown RBP16.46■□□□□ 0.23
SF3B1-204ENST00000414963 FBXO28Q9NVF7 368 aa16.46■□□□□ 0.23
SF3B1-204ENST00000414963 BARHL2Q9NY43 387 aa16.46■□□□□ 0.23
SF3B1-204ENST00000414963 HOXC10Q9NYD6 342 aa16.46■□□□□ 0.23
SF3B1-204ENST00000414963 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.46■□□□□ 0.23
SF3B1-204ENST00000414963 PPP1R9AQ9ULJ8 1098 aa16.46■□□□□ 0.23
SF3B1-204ENST00000414963 AGTPBP1Q9UPW5 1226 aa16.46■□□□□ 0.23
SF3B1-204ENST00000414963 MTMR6Q9Y217 621 aa16.46■□□□□ 0.23
SF3B1-204ENST00000414963 WDR33Q9C0J8 1336 aaKnown RBP16.45■□□□□ 0.22
SF3B1-204ENST00000414963 TESPA1A2RU30 521 aaPredicted RBP16.45■□□□□ 0.22
SF3B1-204ENST00000414963 FLOT1O75955 427 aa16.45■□□□□ 0.22
SF3B1-204ENST00000414963 XBP1P17861 261 aa16.45■□□□□ 0.22
SF3B1-204ENST00000414963 DSG3P32926 999 aa16.45■□□□□ 0.22
SF3B1-204ENST00000414963 ZNF157P51786 506 aaPredicted RBP16.45■□□□□ 0.22
SF3B1-204ENST00000414963 TRAF1Q13077 416 aa16.45■□□□□ 0.22
SF3B1-204ENST00000414963 CDC37Q16543 378 aaPredicted RBP16.45■□□□□ 0.22
SF3B1-204ENST00000414963 QRICH1Q2TAL8 776 aa16.45■□□□□ 0.22
SF3B1-204ENST00000414963 RASAL3Q86YV0 1011 aa16.45■□□□□ 0.22
SF3B1-204ENST00000414963 KIFC2Q96AC6 838 aa16.45■□□□□ 0.22
SF3B1-204ENST00000414963 SLC45A1Q9Y2W3 748 aa16.45■□□□□ 0.22
SF3B1-204ENST00000414963 ZDHHC9Q9Y397 364 aa16.45■□□□□ 0.22
SF3B1-204ENST00000414963 LOC285556D6RIA3 1793 aa16.44■□□□□ 0.22
SF3B1-204ENST00000414963 H3BQV1 296 aa16.44■□□□□ 0.22
SF3B1-204ENST00000414963 STXBP3O00186 592 aa16.44■□□□□ 0.22
SF3B1-204ENST00000414963 PPP1R11O60927 126 aaPredicted RBP16.44■□□□□ 0.22
SF3B1-204ENST00000414963 PABPC4Q13310 644 aaKnown RBP eCLIP16.44■□□□□ 0.22
SF3B1-204ENST00000414963 PKP1Q13835 747 aa16.44■□□□□ 0.22
SF3B1-204ENST00000414963 TRIM29Q14134 588 aa16.44■□□□□ 0.22
SF3B1-204ENST00000414963 TREML2Q5T2D2 321 aa16.44■□□□□ 0.22
SF3B1-204ENST00000414963 IFFO2Q5TF58 517 aa16.44■□□□□ 0.22
SF3B1-204ENST00000414963 KRT40Q6A162 431 aa16.44■□□□□ 0.22
SF3B1-204ENST00000414963 WWC2Q6AWC2 1192 aa16.44■□□□□ 0.22
SF3B1-204ENST00000414963 PPP1R18Q6NYC8 613 aa16.44■□□□□ 0.22
SF3B1-204ENST00000414963 GADL1Q6ZQY3 521 aa16.44■□□□□ 0.22
SF3B1-204ENST00000414963 HOMER1Q86YM7 354 aa16.44■□□□□ 0.22
SF3B1-204ENST00000414963 PIBF1Q8WXW3 757 aa16.44■□□□□ 0.22
SF3B1-204ENST00000414963 CCDC102AQ96A19 550 aa16.44■□□□□ 0.22
SF3B1-204ENST00000414963 SHISA4Q96DD7 197 aa16.44■□□□□ 0.22
SF3B1-204ENST00000414963 SLC38A10Q9HBR0 1119 aa16.44■□□□□ 0.22
SF3B1-204ENST00000414963 PNMA2Q9UL42 364 aa16.44■□□□□ 0.22
SF3B1-204ENST00000414963 PTPRFP10586 1907 aa16.43■□□□□ 0.22
SF3B1-204ENST00000414963 VWA5AO00534 786 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms