RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 ORC4O43929 436 aa14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 SLC9A1P19634 815 aa14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 CCT5P48643 541 aa14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 CD19P15391 556 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 GPTP24298 496 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 FANCCQ00597 558 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 TJAP1Q5JTD0 557 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 MYSM1Q5VVJ2 828 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 SKAP1Q86WV1 359 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.54□□□□□ -0.081e-14■■■■■ 125.5
CCDC88A-204ENST00000413716 INTS9Q9NV88 658 aaKnown RBP14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 GRAMD1BQ3KR37 738 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 NLRP9Q7RTR0 991 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 TXNDC2Q86VQ3 553 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 MRPS26Q9BYN8 205 aaKnown RBP14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 CNOT10Q9H9A5 744 aaKnown RBP14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 MYLK4Q86YV6 388 aaPredicted RBP14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 KSR1Q8IVT5 923 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 TEX11Q8IYF3 940 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 PGBD1Q96JS3 809 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 SESTD1Q86VW0 696 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 PIK3R5Q8WYR1 880 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 STX18Q9P2W9 335 aaKnown RBP14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 A0A1B0GVL5 298 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 HDDC2Q7Z4H3 204 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 OPTNQ96CV9 577 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 ZFYVE19Q96K21 471 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 EPAS1Q99814 870 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 PDE1BQ01064 536 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 E2F5Q15329 346 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 RNF169Q8NCN4 708 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 PAG1Q9NWQ8 432 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 SPAG7O75391 227 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 SNX5Q9Y5X3 404 aa14.54□□□□□ -0.08
CCDC88A-204ENST00000413716 CEP78Q5JTW2 689 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 C2CD5Q86YS7 1000 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 NCLNQ969V3 563 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 MTBPQ96DY7 904 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 ATP11BQ9Y2G3 1177 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 F6X3S4 739 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 POLR2BP30876 1174 aaKnown RBP14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 ZNF75DP51815 510 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 RAB3GAP1Q15042 981 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 HOOK2Q96ED9 719 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 HIF1AQ16665 826 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 PATL1Q86TB9 770 aaKnown RBP14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 SNX21Q969T3 373 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 ABHD8Q96I13 439 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 DYDC2Q96IM9 177 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 UBN1Q9NPG3 1134 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 TDRD9Q8NDG6 1382 aaKnown RBP14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 NSFP46459 744 aaKnown RBP14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 YARSP54577 528 aaKnown RBP14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 LETM2Q2VYF4 491 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 MCUQ8NE86 351 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 PTPRGP23470 1445 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 RFC4P35249 363 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 RANBP1P43487 201 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 NELFBQ8WX92 580 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 ANO3Q9BYT9 981 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 KCNH3Q9ULD8 1083 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 NAIPQ13075 1403 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 A6NJR5 290 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 E2F6O75461 281 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 NR1I2O75469 434 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 KRT14P02533 472 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 ARHGEF18Q6ZSZ5 1173 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 MYCT1Q8N699 235 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 PHF21AQ96BD5 680 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 ST7Q9NRC1 585 aa14.53□□□□□ -0.08
CCDC88A-204ENST00000413716 F8W8V4 182 aa14.52□□□□□ -0.08
CCDC88A-204ENST00000413716 CHEK2O96017 543 aa14.52□□□□□ -0.08
CCDC88A-204ENST00000413716 TRIM27P14373 513 aa14.52□□□□□ -0.08
CCDC88A-204ENST00000413716 SLC12A5Q9H2X9 1139 aa14.52□□□□□ -0.08
CCDC88A-204ENST00000413716 CCDC78A2IDD5 438 aa14.52□□□□□ -0.08
CCDC88A-204ENST00000413716 MCF2LO15068 1137 aa14.52□□□□□ -0.08
CCDC88A-204ENST00000413716 YWHAGP61981 247 aaKnown RBP eCLIP14.52□□□□□ -0.08
CCDC88A-204ENST00000413716 CAPN12Q6ZSI9 719 aa14.52□□□□□ -0.08
CCDC88A-204ENST00000413716 TNNI1P19237 187 aa14.52□□□□□ -0.09
CCDC88A-204ENST00000413716 MAML1Q92585 1016 aa14.52□□□□□ -0.09
CCDC88A-204ENST00000413716 SAAL1Q96ER3 474 aa14.52□□□□□ -0.09
CCDC88A-204ENST00000413716 UIMC1Q96RL1 719 aa14.52□□□□□ -0.09
CCDC88A-204ENST00000413716 TSC22D4Q9Y3Q8 395 aa14.52□□□□□ -0.09
CCDC88A-204ENST00000413716 SLC4A7Q9Y6M7 1214 aa14.52□□□□□ -0.09
CCDC88A-204ENST00000413716 EFCAB8A8MWE9 144 aa14.52□□□□□ -0.09
CCDC88A-204ENST00000413716 XPAP23025 273 aaPredicted RBP14.52□□□□□ -0.09
CCDC88A-204ENST00000413716 WDR97A6NE52 1622 aa14.52□□□□□ -0.09
CCDC88A-204ENST00000413716 PDE6CP51160 858 aa14.52□□□□□ -0.09
CCDC88A-204ENST00000413716 TRAF7Q6Q0C0 670 aa14.52□□□□□ -0.09
CCDC88A-204ENST00000413716 EXOC3O60645 756 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 XRCC5P13010 732 aaKnown RBP14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 OLFM3Q96PB7 478 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 KCNG1Q9UIX4 513 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 ARHGAP10A1A4S6 786 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 F8W031 263 aaPredicted RBP14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 MAGEA1P43355 309 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 MLKLQ8NB16 471 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 ESYT1Q9BSJ8 1104 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 PICK1Q9NRD5 415 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms