RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 E7ENQ6 273 aa14.09□□□□□ -0.15
COL6A3-206ENST00000409809 CFAP70Q5T0N1 1121 aa14.09□□□□□ -0.15
COL6A3-206ENST00000409809 RARS2Q5T160 578 aaKnown RBP14.09□□□□□ -0.15
COL6A3-206ENST00000409809 MCM10Q7L590 875 aa14.09□□□□□ -0.15
COL6A3-206ENST00000409809 CSRNP1Q96S65 589 aa14.09□□□□□ -0.15
COL6A3-206ENST00000409809 NDUFA13Q9P0J0 144 aa14.09□□□□□ -0.15
COL6A3-206ENST00000409809 ADGRL1O94910 1474 aa14.09□□□□□ -0.15
COL6A3-206ENST00000409809 ATF2P15336 505 aa14.09□□□□□ -0.15
COL6A3-206ENST00000409809 HNRNPH2P55795 449 aaKnown RBP14.09□□□□□ -0.15
COL6A3-206ENST00000409809 TEX14Q8IWB6 1497 aa14.09□□□□□ -0.15
COL6A3-206ENST00000409809 JADE1Q6IE81 842 aa14.09□□□□□ -0.15
COL6A3-206ENST00000409809 HIBCHQ6NVY1 386 aaPredicted RBP14.09□□□□□ -0.15
COL6A3-206ENST00000409809 FAM186BQ8IYM0 893 aa14.09□□□□□ -0.15
COL6A3-206ENST00000409809 DIS3Q9Y2L1 958 aaKnown RBP14.09□□□□□ -0.15
COL6A3-206ENST00000409809 SERPINB4P48594 390 aa14.09□□□□□ -0.15
COL6A3-206ENST00000409809 KLHL7Q8IXQ5 586 aa14.09□□□□□ -0.15
COL6A3-206ENST00000409809 PAG1Q9NWQ8 432 aa14.09□□□□□ -0.15
COL6A3-206ENST00000409809 TADA3O75528 432 aa14.08□□□□□ -0.15
COL6A3-206ENST00000409809 AP1B1Q10567 949 aa14.08□□□□□ -0.15
COL6A3-206ENST00000409809 PCDHB15Q9Y5E8 787 aa14.08□□□□□ -0.15
COL6A3-206ENST00000409809 GUCY2FP51841 1108 aa14.08□□□□□ -0.16
COL6A3-206ENST00000409809 PPP2R5DQ14738 602 aa14.08□□□□□ -0.16
COL6A3-206ENST00000409809 CASP8Q14790 479 aa14.08□□□□□ -0.16
COL6A3-206ENST00000409809 PDZD4Q76G19 769 aaPredicted RBP14.08□□□□□ -0.16
COL6A3-206ENST00000409809 NUDCD3Q8IVD9 361 aa14.08□□□□□ -0.16
COL6A3-206ENST00000409809 ICA1LQ8NDH6 482 aa14.08□□□□□ -0.16
COL6A3-206ENST00000409809 CFAP65Q6ZU64 1925 aaKnown RBP14.08□□□□□ -0.16
COL6A3-206ENST00000409809 PARVBQ9HBI1 364 aa14.08□□□□□ -0.16
COL6A3-206ENST00000409809 TEKT2Q9UIF3 430 aa14.08□□□□□ -0.16
COL6A3-206ENST00000409809 POLR2DO15514 142 aaKnown RBP14.08□□□□□ -0.16
COL6A3-206ENST00000409809 E2F5Q15329 346 aa14.08□□□□□ -0.16
COL6A3-206ENST00000409809 KRT39Q6A163 491 aa14.08□□□□□ -0.16
COL6A3-206ENST00000409809 SLC17A8Q8NDX2 589 aa14.08□□□□□ -0.16
COL6A3-206ENST00000409809 MGARPQ8TDB4 240 aa14.08□□□□□ -0.16
COL6A3-206ENST00000409809 VIPAS39Q9H9C1 493 aa14.08□□□□□ -0.16
COL6A3-206ENST00000409809 KLC4Q9NSK0 619 aa14.08□□□□□ -0.16
COL6A3-206ENST00000409809 A0A1W2PQ27 194 aa14.08□□□□□ -0.16
COL6A3-206ENST00000409809 A0A1W2PQ64 194 aa14.08□□□□□ -0.16
COL6A3-206ENST00000409809 A0A1W2PQD8 194 aa14.08□□□□□ -0.16
COL6A3-206ENST00000409809 TSC22D4Q9Y3Q8 395 aa14.08□□□□□ -0.16
COL6A3-206ENST00000409809 STAT1P42224 750 aa14.08□□□□□ -0.16
COL6A3-206ENST00000409809 CCDC117Q8IWD4 279 aaPredicted RBP14.08□□□□□ -0.16
COL6A3-206ENST00000409809 PANX2Q96RD6 677 aa14.08□□□□□ -0.16
COL6A3-206ENST00000409809 TRAIPQ9BWF2 469 aa14.08□□□□□ -0.16
COL6A3-206ENST00000409809 TRIM33Q9UPN9 1127 aa14.08□□□□□ -0.16
COL6A3-206ENST00000409809 PGRMC1O00264 195 aaKnown RBP14.07□□□□□ -0.16
COL6A3-206ENST00000409809 EEF1B2P24534 225 aaKnown RBP14.07□□□□□ -0.16
COL6A3-206ENST00000409809 STX1BP61266 288 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 KLC1Q07866 573 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 CUEDC2Q9H467 287 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 TARSL2A2RTX5 802 aaKnown RBP14.07□□□□□ -0.16
COL6A3-206ENST00000409809 ATICP31939 592 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 ACBD5Q5T8D3 534 aaPredicted RBP14.07□□□□□ -0.16
COL6A3-206ENST00000409809 NELFBQ8WX92 580 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 ANGEL1Q9UNK9 670 aaKnown RBP14.07□□□□□ -0.16
COL6A3-206ENST00000409809 BLMP54132 1417 aaPredicted RBP14.07□□□□□ -0.16
COL6A3-206ENST00000409809 SLC44A4Q53GD3 710 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 KIAA2013Q8IYS2 634 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 PSD3Q9NYI0 1048 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 CWF19L2Q2TBE0 894 aaKnown RBP14.07□□□□□ -0.16
COL6A3-206ENST00000409809 C2CD5Q86YS7 1000 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 SLF1Q9BQI6 1058 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 CAV1Q03135 178 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 KCNJ18B7U540 433 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 HNRNPRO43390 633 aaKnown RBP14.07□□□□□ -0.16
COL6A3-206ENST00000409809 TMCC1O94876 653 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 GJC1P36383 396 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 ADCY8P40145 1251 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 KCNJ12Q14500 433 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 FMO2Q99518 471 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 CABP1Q9NZU7 370 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 EPN1Q9Y6I3 576 aaPredicted RBP14.07□□□□□ -0.16
COL6A3-206ENST00000409809 POLR1AO95602 1720 aaPredicted RBP14.07□□□□□ -0.16
COL6A3-206ENST00000409809 STX17P56962 302 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 CDR2Q01850 454 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 ZBTB40Q9NUA8 1239 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 RNF123Q5XPI4 1314 aa14.07□□□□□ -0.16
COL6A3-206ENST00000409809 XRCC5P13010 732 aaKnown RBP14.06□□□□□ -0.16
COL6A3-206ENST00000409809 IRX5P78411 483 aaPredicted RBP14.06□□□□□ -0.16
COL6A3-206ENST00000409809 NNTQ13423 1086 aa14.06□□□□□ -0.16
COL6A3-206ENST00000409809 CCDC184Q52MB2 194 aa14.06□□□□□ -0.16
COL6A3-206ENST00000409809 C3orf20Q8ND61 904 aa14.06□□□□□ -0.16
COL6A3-206ENST00000409809 NPC1L1Q9UHC9 1359 aa14.06□□□□□ -0.16
COL6A3-206ENST00000409809 MRPS15P82914 257 aaKnown RBP14.06□□□□□ -0.16
COL6A3-206ENST00000409809 DCUN1D2Q6PH85 259 aa14.06□□□□□ -0.16
COL6A3-206ENST00000409809 NEK9Q8TD19 979 aa14.06□□□□□ -0.16
COL6A3-206ENST00000409809 TRIM31Q9BZY9 425 aa14.06□□□□□ -0.16
COL6A3-206ENST00000409809 CABP5Q9NP86 173 aa14.06□□□□□ -0.16
COL6A3-206ENST00000409809 ZNF644Q9H582 1327 aaPredicted RBP14.06□□□□□ -0.16
COL6A3-206ENST00000409809 HAUS7Q99871 368 aa14.06□□□□□ -0.16
COL6A3-206ENST00000409809 CCDC8Q9H0W5 538 aaPredicted RBP14.06□□□□□ -0.16
COL6A3-206ENST00000409809 IL1RAPL1Q9NZN1 696 aa14.06□□□□□ -0.16
COL6A3-206ENST00000409809 ELF1P32519 619 aa14.06□□□□□ -0.16
COL6A3-206ENST00000409809 RNF207Q6ZRF8 634 aa14.06□□□□□ -0.16
COL6A3-206ENST00000409809 NSMCE1Q8WV22 266 aa14.06□□□□□ -0.16
COL6A3-206ENST00000409809 INHBAP08476 426 aa14.06□□□□□ -0.16
COL6A3-206ENST00000409809 ACTN1P12814 892 aa14.06□□□□□ -0.16
COL6A3-206ENST00000409809 SNX1Q13596 522 aa14.06□□□□□ -0.16
COL6A3-206ENST00000409809 ANKRD42Q8N9B4 389 aa14.06□□□□□ -0.16
COL6A3-206ENST00000409809 ATP6V0A1Q93050 837 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms