RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 H3BRJ5 948 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 XPAP23025 273 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-210ENST00000409694 PUM3Q15397 648 aaKnown RBP8.6□□□□□ -1.03
SYNE1-210ENST00000409694 ZKSCAN8Q15776 578 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-210ENST00000409694 TEDDM1Q5T9Z0 273 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 TRIM59Q8IWR1 403 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 CACTINQ8WUQ7 758 aaKnown RBP8.6□□□□□ -1.03
SYNE1-210ENST00000409694 ZNF219Q9P2Y4 722 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-210ENST00000409694 PDE1AP54750 535 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 EIF4G3O43432 1585 aaKnown RBP8.6□□□□□ -1.03
SYNE1-210ENST00000409694 AOX1Q06278 1338 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 ZNF75DP51815 510 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 ANO1Q5XXA6 986 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 DHX38Q92620 1227 aaKnown RBP8.6□□□□□ -1.03
SYNE1-210ENST00000409694 EDEM3Q9BZQ6 932 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 ITM2BQ9Y287 266 aa8.6□□□□□ -1.03
SYNE1-210ENST00000409694 ART3Q13508 389 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 ARHGAP44Q17R89 818 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 PHKBQ93100 1093 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 SPDYE2BA6NHP3 402 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 SPDYE6P0CI01 402 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 U2AF2P26368 475 aaKnown RBP eCLIP8.59□□□□□ -1.03
SYNE1-210ENST00000409694 DYNC1I2Q13409 638 aaKnown RBP8.59□□□□□ -1.03
SYNE1-210ENST00000409694 SLFN12Q8IYM2 578 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 SPDYE1Q8NFV5 336 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-210ENST00000409694 VPS16Q9H269 839 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 PCDHB13Q9Y5F0 798 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 SYCE1LA8MT33 242 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 OCM2P0CE71 109 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 OCMP0CE72 109 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-210ENST00000409694 TNNI1P19237 187 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 RNASE9P60153 205 aaKnown RBP8.59□□□□□ -1.03
SYNE1-210ENST00000409694 DMP1Q13316 513 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-210ENST00000409694 JRKLQ9Y4A0 524 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 CREB3O43889 395 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 CD19P15391 556 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 NCAPH2Q6IBW4 605 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 ELMSAN1Q6PJG2 1045 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 SCYL3Q8IZE3 742 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 LZICQ8WZA0 190 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 AK9Q5TCS8 1911 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 ARHGEF37A1IGU5 675 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 ACTR5Q9H9F9 607 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-210ENST00000409694 MAGEF1Q9HAY2 307 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 NESP48681 1621 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 SKOR1P84550 965 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 CDC37L1Q7L3B6 337 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 ZBTB8OSQ8IWT0 167 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 ZC3H12CQ9C0D7 883 aaKnown RBP8.59□□□□□ -1.03
SYNE1-210ENST00000409694 FAM96AQ9H5X1 160 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 SLC8A2Q9UPR5 921 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 PARP3Q9Y6F1 533 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 KDM2BQ8NHM5 1336 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 HP1BP3Q5SSJ5 553 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-210ENST00000409694 BEND3Q5T5X7 828 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 KIF17Q9P2E2 1029 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 CTTNBP2Q8WZ74 1663 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.59□□□□□ -1.03
SYNE1-210ENST00000409694 WDR7Q9Y4E6 1490 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 POLR2DO15514 142 aaKnown RBP8.59□□□□□ -1.03
SYNE1-210ENST00000409694 MAGEA1P43355 309 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 LCMT1Q9UIC8 334 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 TOP2BQ02880 1626 aa8.59□□□□□ -1.03
SYNE1-210ENST00000409694 BPIFB4P59827 614 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 OLA1Q9NTK5 396 aaKnown RBP8.58□□□□□ -1.04
SYNE1-210ENST00000409694 PI4KAP2A4QPH2 592 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 ZBED4O75132 1171 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 SP4Q02446 784 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 LRRC8BQ6P9F7 803 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 PI4KAP1Q8N8J0 262 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 OTUB1Q96FW1 271 aaPredicted RBP8.58□□□□□ -1.04
SYNE1-210ENST00000409694 IRAK4Q9NWZ3 460 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 TCP1P17987 556 aaKnown RBP8.58□□□□□ -1.04
SYNE1-210ENST00000409694 ATP6V1E2Q96A05 226 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 ZFYVE9O95405 1425 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 SLC12A6Q9UHW9 1150 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 AK2P54819 239 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 TRAIPQ9BWF2 469 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 CHCHD3Q9NX63 227 aaKnown RBP8.58□□□□□ -1.04
SYNE1-210ENST00000409694 PPP1R12AO14974 1030 aaPredicted RBP8.58□□□□□ -1.04
SYNE1-210ENST00000409694 TTC38Q5R3I4 469 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 DDX42Q86XP3 938 aaKnown RBP eCLIP8.58□□□□□ -1.04
SYNE1-210ENST00000409694 EXOC8Q8IYI6 725 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 ENAHQ8N8S7 591 aaPredicted RBP8.58□□□□□ -1.04
SYNE1-210ENST00000409694 CALR3Q96L12 384 aaKnown RBP8.58□□□□□ -1.04
SYNE1-210ENST00000409694 HESX1Q9UBX0 185 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 DMRT2Q9Y5R5 561 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 EEF1GP26641 437 aaKnown RBP8.58□□□□□ -1.04
SYNE1-210ENST00000409694 TPTE2Q6XPS3 522 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 BEGAINQ9BUH8 593 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 COG4Q9H9E3 785 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 MYO1AQ9UBC5 1043 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 CAPN11Q9UMQ6 739 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 ARHGAP26Q9UNA1 814 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 CPP00450 1065 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 C6orf118Q5T5N4 469 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 NLRX1Q86UT6 975 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 CNPY4Q8N129 248 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 PARD3BQ8TEW8 1205 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 NGLY1Q96IV0 654 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms