RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 SMCO2A6NFE2 343 aa23.58■■□□□ 1.37
USP39-203ENST00000409470 SNHG28P0DPA3 235 aa23.58■■□□□ 1.37
USP39-203ENST00000409470 GNA11P29992 359 aa23.58■■□□□ 1.37
USP39-203ENST00000409470 CFAP100Q494V2 611 aa23.58■■□□□ 1.37
USP39-203ENST00000409470 PPP4R3BQ5MIZ7 849 aa23.58■■□□□ 1.37
USP39-203ENST00000409470 TDRD3Q9H7E2 651 aaKnown RBP23.58■■□□□ 1.37
USP39-203ENST00000409470 DNAJC18Q9H819 358 aa23.58■■□□□ 1.37
USP39-203ENST00000409470 NPM3O75607 178 aaKnown RBP23.57■■□□□ 1.36
USP39-203ENST00000409470 CDC25BP30305 580 aa23.57■■□□□ 1.36
USP39-203ENST00000409470 SMARCE1Q969G3 411 aa23.57■■□□□ 1.36
USP39-203ENST00000409470 FAM196BA6NMK8 535 aa23.57■■□□□ 1.36
USP39-203ENST00000409470 PRR29P0C7W0 189 aa23.57■■□□□ 1.36
USP39-203ENST00000409470 DPEP1P16444 411 aa23.57■■□□□ 1.36
USP39-203ENST00000409470 INF2Q27J81 1249 aa23.57■■□□□ 1.36
USP39-203ENST00000409470 GRAMD1CQ8IYS0 662 aa23.57■■□□□ 1.36
USP39-203ENST00000409470 SLC16A10Q8TF71 515 aa23.57■■□□□ 1.36
USP39-203ENST00000409470 MRFAP1L1Q96HT8 127 aa23.57■■□□□ 1.36
USP39-203ENST00000409470 A0A087X0B3 334 aa23.56■■□□□ 1.36
USP39-203ENST00000409470 CERKLQ49MI3 558 aaPredicted RBP23.56■■□□□ 1.36
USP39-203ENST00000409470 ARL6IP4Q66PJ3 421 aaKnown RBP23.56■■□□□ 1.36
USP39-203ENST00000409470 SH3BP5LQ7L8J4 393 aa23.56■■□□□ 1.36
USP39-203ENST00000409470 ZNF543Q08ER8 600 aa23.55■■□□□ 1.36
USP39-203ENST00000409470 LARGE2Q8N3Y3 721 aa23.55■■□□□ 1.36
USP39-203ENST00000409470 PSMD1Q99460 953 aa23.55■■□□□ 1.36
USP39-203ENST00000409470 MAN1B1Q9UKM7 699 aa23.55■■□□□ 1.36
USP39-203ENST00000409470 hCG_1984214I3L0E3 225 aa23.55■■□□□ 1.36
USP39-203ENST00000409470 IKBKBO14920 756 aa23.55■■□□□ 1.36
USP39-203ENST00000409470 SLFN14P0C7P3 912 aa23.55■■□□□ 1.36
USP39-203ENST00000409470 PTGS1P23219 599 aa23.55■■□□□ 1.36
USP39-203ENST00000409470 CCDC96Q2M329 555 aa23.55■■□□□ 1.36
USP39-203ENST00000409470 CCDC186Q7Z3E2 898 aa23.55■■□□□ 1.36
USP39-203ENST00000409470 KRT25Q7Z3Z0 450 aa23.55■■□□□ 1.36
USP39-203ENST00000409470 ZNF713Q8N859 430 aaPredicted RBP23.55■■□□□ 1.36
USP39-203ENST00000409470 IL17AQ16552 155 aa23.54■■□□□ 1.36
USP39-203ENST00000409470 C4orf32Q8N8J7 132 aa23.54■■□□□ 1.36
USP39-203ENST00000409470 PRMT6Q96LA8 375 aaPredicted RBP23.54■■□□□ 1.36
USP39-203ENST00000409470 ZNF277Q9NRM2 450 aaPredicted RBP23.54■■□□□ 1.36
USP39-203ENST00000409470 NCAPHQ15003 741 aa23.54■■□□□ 1.36
USP39-203ENST00000409470 NT5DC1Q5TFE4 455 aa23.54■■□□□ 1.36
USP39-203ENST00000409470 RSBN1LQ6PCB5 846 aaPredicted RBP23.54■■□□□ 1.36
USP39-203ENST00000409470 NRBP1Q9UHY1 535 aa23.54■■□□□ 1.36
USP39-203ENST00000409470 SIPA1L1O43166 1804 aa23.53■■□□□ 1.36
USP39-203ENST00000409470 GREB1LQ9C091 1923 aaPredicted RBP23.53■■□□□ 1.36
USP39-203ENST00000409470 RAD17O75943 681 aa23.53■■□□□ 1.36
USP39-203ENST00000409470 SMC2O95347 1197 aa23.53■■□□□ 1.36
USP39-203ENST00000409470 KCNA3P22001 575 aa23.53■■□□□ 1.36
USP39-203ENST00000409470 LONP1P36776 959 aaKnown RBP23.53■■□□□ 1.36
USP39-203ENST00000409470 NONOQ15233 471 aaKnown RBP eCLIP23.53■■□□□ 1.36
USP39-203ENST00000409470 GPATCH4Q5T3I0 446 aaKnown RBP23.53■■□□□ 1.36
USP39-203ENST00000409470 KCNF1Q9H3M0 494 aa23.53■■□□□ 1.36
USP39-203ENST00000409470 MYH4Q9Y623 1939 aa23.52■■□□□ 1.36
USP39-203ENST00000409470 RAD21O60216 631 aa23.52■■□□□ 1.36
USP39-203ENST00000409470 ENTPD3O75355 529 aa23.52■■□□□ 1.36
USP39-203ENST00000409470 AFMP43652 599 aa23.52■■□□□ 1.36
USP39-203ENST00000409470 SARSP49591 514 aaKnown RBP23.52■■□□□ 1.36
USP39-203ENST00000409470 MYL5Q02045 173 aa23.52■■□□□ 1.36
USP39-203ENST00000409470 PAGE5Q96GU1 130 aa23.52■■□□□ 1.36
USP39-203ENST00000409470 PYM1Q9BRP8 204 aaKnown RBP23.52■■□□□ 1.36
USP39-203ENST00000409470 KANSL2Q9H9L4 492 aa23.52■■□□□ 1.36
USP39-203ENST00000409470 ESYT2A0FGR8 921 aa23.52■■□□□ 1.36
USP39-203ENST00000409470 BMP6P22004 513 aa23.52■■□□□ 1.36
USP39-203ENST00000409470 DTHD1Q6ZMT9 781 aa23.52■■□□□ 1.36
USP39-203ENST00000409470 ADGRF4Q8IZF3 695 aa23.52■■□□□ 1.36
USP39-203ENST00000409470 REXO1Q8N1G1 1221 aaKnown RBP23.52■■□□□ 1.36
USP39-203ENST00000409470 TRIML1Q8N9V2 468 aa23.52■■□□□ 1.36
USP39-203ENST00000409470 IQUBQ8NA54 791 aa23.52■■□□□ 1.36
USP39-203ENST00000409470 TMOD2Q9NZR1 351 aa23.52■■□□□ 1.36
USP39-203ENST00000409470 EEF2P13639 858 aaKnown RBP23.51■■□□□ 1.35
USP39-203ENST00000409470 TXLNAP40222 546 aa23.51■■□□□ 1.35
USP39-203ENST00000409470 TTBK2Q6IQ55 1244 aa23.51■■□□□ 1.35
USP39-203ENST00000409470 TATDN1Q6P1N9 297 aa23.51■■□□□ 1.35
USP39-203ENST00000409470 KCTD1Q719H9 257 aa23.51■■□□□ 1.35
USP39-203ENST00000409470 COA7Q96BR5 231 aa23.51■■□□□ 1.35
USP39-203ENST00000409470 JMJD4Q9H9V9 463 aa23.51■■□□□ 1.35
USP39-203ENST00000409470 DACH1Q9UI36 760 aa23.51■■□□□ 1.35
USP39-203ENST00000409470 PSMD14O00487 310 aa23.5■■□□□ 1.35
USP39-203ENST00000409470 LMOD1P29536 600 aaPredicted RBP23.5■■□□□ 1.35
USP39-203ENST00000409470 MORC3Q14149 939 aa23.5■■□□□ 1.35
USP39-203ENST00000409470 SHROOM1Q2M3G4 852 aaPredicted RBP23.5■■□□□ 1.35
USP39-203ENST00000409470 BIN2Q9UBW5 565 aaPredicted RBP23.5■■□□□ 1.35
USP39-203ENST00000409470 HDAC9Q9UKV0 1011 aa23.5■■□□□ 1.35
USP39-203ENST00000409470 GOLGB1Q14789 3259 aaKnown RBP23.5■■□□□ 1.35
USP39-203ENST00000409470 PNMA6FA0A0J9YX94 578 aa23.5■■□□□ 1.35
USP39-203ENST00000409470 LAD1O00515 517 aa23.5■■□□□ 1.35
USP39-203ENST00000409470 LETM2Q2VYF4 491 aa23.5■■□□□ 1.35
USP39-203ENST00000409470 JAKMIP3Q5VZ66 844 aa23.5■■□□□ 1.35
USP39-203ENST00000409470 SH3RF1Q7Z6J0 888 aa23.5■■□□□ 1.35
USP39-203ENST00000409470 MLKLQ8NB16 471 aa23.5■■□□□ 1.35
USP39-203ENST00000409470 TMEM60Q9H2L4 133 aa23.5■■□□□ 1.35
USP39-203ENST00000409470 NYAP2Q9P242 653 aa23.5■■□□□ 1.35
USP39-203ENST00000409470 SLC16A2P36021 539 aa23.49■■□□□ 1.35
USP39-203ENST00000409470 ADCY7P51828 1080 aa23.49■■□□□ 1.35
USP39-203ENST00000409470 SEPT2Q15019 361 aa23.49■■□□□ 1.35
USP39-203ENST00000409470 TMEM179Q6ZVK1 233 aa23.49■■□□□ 1.35
USP39-203ENST00000409470 OGFOD1Q8N543 542 aa23.49■■□□□ 1.35
USP39-203ENST00000409470 SPATA20Q8TB22 786 aa23.49■■□□□ 1.35
USP39-203ENST00000409470 FBXO41Q8TF61 875 aa23.49■■□□□ 1.35
USP39-203ENST00000409470 MKL1Q969V6 931 aa23.49■■□□□ 1.35
USP39-203ENST00000409470 ATRNL1Q5VV63 1379 aa23.49■■□□□ 1.35
USP39-203ENST00000409470 CCNT1O60563 726 aaKnown RBP23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms