RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 CATIPQ7Z7H3 387 aa23.59■■□□□ 1.37
CTCF-202ENST00000401394 PACS2Q86VP3 889 aa23.59■■□□□ 1.37
CTCF-202ENST00000401394 RRP36Q96EU6 259 aaKnown RBP23.59■■□□□ 1.37
CTCF-202ENST00000401394 PSD3Q9NYI0 1048 aa23.59■■□□□ 1.37
CTCF-202ENST00000401394 WHAMMP3Q1A5X7 153 aa23.59■■□□□ 1.37
CTCF-202ENST00000401394 RWDD2AQ9UIY3 292 aa23.59■■□□□ 1.37
CTCF-202ENST00000401394 COL4A1P02462 1669 aa23.59■■□□□ 1.37
CTCF-202ENST00000401394 ATP2B2Q01814 1243 aa23.58■■□□□ 1.37
CTCF-202ENST00000401394 C3orf67Q6ZVT6 689 aa23.58■■□□□ 1.37
CTCF-202ENST00000401394 LRRC10BA6NIK2 292 aa23.58■■□□□ 1.37
CTCF-202ENST00000401394 PRPF3O43395 683 aaKnown RBP23.58■■□□□ 1.37
CTCF-202ENST00000401394 EIF3JO75822 258 aaKnown RBP23.58■■□□□ 1.37
CTCF-202ENST00000401394 NAALADL2Q58DX5 795 aa23.58■■□□□ 1.37
CTCF-202ENST00000401394 MROH5Q6ZUA9 1318 aa23.58■■□□□ 1.36
CTCF-202ENST00000401394 ZPR1O75312 459 aa23.58■■□□□ 1.36
CTCF-202ENST00000401394 USP14P54578 494 aa23.58■■□□□ 1.36
CTCF-202ENST00000401394 PIP4K2BP78356 416 aa23.58■■□□□ 1.36
CTCF-202ENST00000401394 MB21D1Q8N884 522 aa23.58■■□□□ 1.36
CTCF-202ENST00000401394 EIF3CLB5ME19 914 aaKnown RBP23.57■■□□□ 1.36
CTCF-202ENST00000401394 XBP1P17861 261 aa23.57■■□□□ 1.36
CTCF-202ENST00000401394 STAG2Q8N3U4 1231 aa23.57■■□□□ 1.36
CTCF-202ENST00000401394 CCDC24Q8N4L8 307 aa23.57■■□□□ 1.36
CTCF-202ENST00000401394 ANKRD13CQ8N6S4 541 aa23.57■■□□□ 1.36
CTCF-202ENST00000401394 FERMT2Q96AC1 680 aa23.57■■□□□ 1.36
CTCF-202ENST00000401394 EIF3CQ99613 913 aaKnown RBP23.57■■□□□ 1.36
CTCF-202ENST00000401394 HPCAL4Q9UM19 191 aa23.57■■□□□ 1.36
CTCF-202ENST00000401394 LUC7L2Q9Y383 392 aaKnown RBP23.57■■□□□ 1.36
CTCF-202ENST00000401394 CNTNAP5Q8WYK1 1306 aa23.57■■□□□ 1.36
CTCF-202ENST00000401394 ZC3H4Q9UPT8 1303 aaKnown RBP23.57■■□□□ 1.36
CTCF-202ENST00000401394 FECHP22830 423 aa23.57■■□□□ 1.36
CTCF-202ENST00000401394 STAT6P42226 847 aa23.57■■□□□ 1.36
CTCF-202ENST00000401394 BRINP3Q76B58 766 aa23.57■■□□□ 1.36
CTCF-202ENST00000401394 CCDC148Q8NFR7 591 aa23.57■■□□□ 1.36
CTCF-202ENST00000401394 JAKMIP2Q96AA8 810 aa23.57■■□□□ 1.36
CTCF-202ENST00000401394 JADE2Q9NQC1 790 aa23.57■■□□□ 1.36
CTCF-202ENST00000401394 SAR1BQ9Y6B6 198 aa23.57■■□□□ 1.36
CTCF-202ENST00000401394 DNA2P51530 1060 aa23.56■■□□□ 1.36
CTCF-202ENST00000401394 TMTC3Q6ZXV5 915 aa23.56■■□□□ 1.36
CTCF-202ENST00000401394 KIAA1328Q86T90 577 aa23.56■■□□□ 1.36
CTCF-202ENST00000401394 TMTC2Q8N394 836 aa23.56■■□□□ 1.36
CTCF-202ENST00000401394 OR8K1Q8NGG5 319 aa23.56■■□□□ 1.36
CTCF-202ENST00000401394 RIOK1Q9BRS2 568 aaKnown RBP23.56■■□□□ 1.36
CTCF-202ENST00000401394 CWC15Q9P013 229 aaKnown RBP23.56■■□□□ 1.36
CTCF-202ENST00000401394 UBR2Q8IWV8 1755 aa23.56■■□□□ 1.36
CTCF-202ENST00000401394 ZNF658Q5TYW1 1059 aaPredicted RBP23.56■■□□□ 1.36
CTCF-202ENST00000401394 CAGE1Q8TC20 777 aa23.56■■□□□ 1.36
CTCF-202ENST00000401394 PCMTD1Q96MG8 357 aaPredicted RBP23.56■■□□□ 1.36
CTCF-202ENST00000401394 ITIH6Q6UXX5 1313 aa23.56■■□□□ 1.36
CTCF-202ENST00000401394 AGPSO00116 658 aa23.55■■□□□ 1.36
CTCF-202ENST00000401394 CTR9Q6PD62 1173 aa23.55■■□□□ 1.36
CTCF-202ENST00000401394 TRIM47Q96LD4 638 aa23.55■■□□□ 1.36
CTCF-202ENST00000401394 RNF41Q9H4P4 317 aaPredicted RBP23.55■■□□□ 1.36
CTCF-202ENST00000401394 PNPLA7Q6ZV29 1317 aa23.55■■□□□ 1.36
CTCF-202ENST00000401394 BAZ2AQ9UIF9 1905 aaKnown RBP23.55■■□□□ 1.36
CTCF-202ENST00000401394 ZNF263O14978 683 aa23.55■■□□□ 1.36
CTCF-202ENST00000401394 GTPBP6O43824 516 aaPredicted RBP23.55■■□□□ 1.36
CTCF-202ENST00000401394 PRPF6O94906 941 aaKnown RBP23.55■■□□□ 1.36
CTCF-202ENST00000401394 MLXIPQ9HAP2 919 aa23.55■■□□□ 1.36
CTCF-202ENST00000401394 FAM71BQ8TC56 605 aa23.55■■□□□ 1.36
CTCF-202ENST00000401394 COG1Q8WTW3 980 aa23.55■■□□□ 1.36
CTCF-202ENST00000401394 CARD10Q9BWT7 1032 aa23.55■■□□□ 1.36
CTCF-202ENST00000401394 NID2Q14112 1375 aa23.54■■□□□ 1.36
CTCF-202ENST00000401394 FCER1AP12319 257 aa23.54■■□□□ 1.36
CTCF-202ENST00000401394 KCNQ4P56696 695 aa23.54■■□□□ 1.36
CTCF-202ENST00000401394 CHD4Q14839 1912 aa23.54■■□□□ 1.36
CTCF-202ENST00000401394 COL5A2P05997 1499 aaPredicted RBP23.54■■□□□ 1.36
CTCF-202ENST00000401394 EPHB6O15197 1021 aa23.54■■□□□ 1.36
CTCF-202ENST00000401394 SLC20A2Q08357 652 aa23.54■■□□□ 1.36
CTCF-202ENST00000401394 DMGDHQ9UI17 866 aaKnown RBP23.54■■□□□ 1.36
CTCF-202ENST00000401394 MYH6P13533 1939 aa23.53■■□□□ 1.36
CTCF-202ENST00000401394 ZNF34Q8IZ26 560 aa23.53■■□□□ 1.36
CTCF-202ENST00000401394 CCDC51Q96ER9 411 aa23.53■■□□□ 1.36
CTCF-202ENST00000401394 POTEB2H3BUK9 544 aa23.53■■□□□ 1.36
CTCF-202ENST00000401394 TRIM21P19474 475 aaKnown RBP23.53■■□□□ 1.36
CTCF-202ENST00000401394 EIF5P55010 431 aaKnown RBP23.53■■□□□ 1.36
CTCF-202ENST00000401394 INF2Q27J81 1249 aa23.53■■□□□ 1.36
CTCF-202ENST00000401394 PLEKHG2Q9H7P9 1386 aa23.53■■□□□ 1.36
CTCF-202ENST00000401394 NCK2O43639 380 aa23.52■■□□□ 1.36
CTCF-202ENST00000401394 ADSSL1Q8N142 457 aa23.52■■□□□ 1.36
CTCF-202ENST00000401394 ZNF507Q8TCN5 953 aa23.52■■□□□ 1.36
CTCF-202ENST00000401394 SELENOOQ9BVL4 669 aa23.52■■□□□ 1.36
CTCF-202ENST00000401394 NHEJ1Q9H9Q4 299 aaPredicted RBP23.52■■□□□ 1.36
CTCF-202ENST00000401394 LRWD1Q9UFC0 647 aa23.52■■□□□ 1.36
CTCF-202ENST00000401394 CAPN6Q9Y6Q1 641 aa23.52■■□□□ 1.36
CTCF-202ENST00000401394 COL1A1P02452 1464 aaPredicted RBP23.52■■□□□ 1.36
CTCF-202ENST00000401394 SCG2P13521 617 aa23.52■■□□□ 1.36
CTCF-202ENST00000401394 IDEP14735 1019 aa23.52■■□□□ 1.36
CTCF-202ENST00000401394 GNAT2P19087 354 aa23.52■■□□□ 1.36
CTCF-202ENST00000401394 C4orf32Q8N8J7 132 aa23.52■■□□□ 1.36
CTCF-202ENST00000401394 UIMC1Q96RL1 719 aa23.52■■□□□ 1.36
CTCF-202ENST00000401394 SEMA3EO15041 775 aa23.52■■□□□ 1.36
CTCF-202ENST00000401394 IQCA1Q86XH1 822 aa23.52■■□□□ 1.36
CTCF-202ENST00000401394 AFAP1L1Q8TED9 768 aa23.52■■□□□ 1.36
CTCF-202ENST00000401394 KAT14Q9H8E8 782 aa23.52■■□□□ 1.36
CTCF-202ENST00000401394 BRMS1Q9HCU9 246 aa23.52■■□□□ 1.36
CTCF-202ENST00000401394 GOLGA8HP0CJ92 632 aa23.51■■□□□ 1.35
CTCF-202ENST00000401394 NOP2P46087 812 aaKnown RBP23.51■■□□□ 1.35
CTCF-202ENST00000401394 STIM1Q13586 685 aa23.51■■□□□ 1.35
CTCF-202ENST00000401394 WDR93Q6P2C0 686 aa23.51■■□□□ 1.35
CTCF-202ENST00000401394 ACSBG1Q96GR2 724 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms