RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 OTUD5Q96G74 571 aa8.21□□□□□ -1.1
LIMA1-202ENST00000394943 JAKMIP1Q96N16 626 aaKnown RBP8.21□□□□□ -1.1
LIMA1-202ENST00000394943 DIS3Q9Y2L1 958 aaKnown RBP8.21□□□□□ -1.1
LIMA1-202ENST00000394943 PDHXO00330 501 aa8.21□□□□□ -1.1
LIMA1-202ENST00000394943 CYTH3O43739 400 aa8.21□□□□□ -1.1
LIMA1-202ENST00000394943 PRMT2P55345 433 aa8.21□□□□□ -1.1
LIMA1-202ENST00000394943 Q6ZUG5 572 aa8.21□□□□□ -1.1
LIMA1-202ENST00000394943 PRPF38AQ8NAV1 312 aaKnown RBP8.21□□□□□ -1.1
LIMA1-202ENST00000394943 SLF1Q9BQI6 1058 aa8.21□□□□□ -1.1
LIMA1-202ENST00000394943 RPAP3Q9H6T3 665 aaPredicted RBP8.21□□□□□ -1.1
LIMA1-202ENST00000394943 SH2B1Q9NRF2 756 aaPredicted RBP8.21□□□□□ -1.1
LIMA1-202ENST00000394943 TMOD4Q9NZQ9 345 aa8.21□□□□□ -1.1
LIMA1-202ENST00000394943 RBM27Q9P2N5 1060 aaKnown RBP8.21□□□□□ -1.1
LIMA1-202ENST00000394943 PRPF3O43395 683 aaKnown RBP8.2□□□□□ -1.1
LIMA1-202ENST00000394943 RANBP6O60518 1105 aaKnown RBP8.2□□□□□ -1.1
LIMA1-202ENST00000394943 CASTP20810 708 aaKnown RBP8.2□□□□□ -1.1
LIMA1-202ENST00000394943 CLK2P49760 499 aaKnown RBP8.2□□□□□ -1.1
LIMA1-202ENST00000394943 TMEM67Q5HYA8 995 aa8.2□□□□□ -1.1
LIMA1-202ENST00000394943 OTUD7BQ6GQQ9 843 aa8.2□□□□□ -1.1
LIMA1-202ENST00000394943 MSL3Q8N5Y2 521 aaKnown RBP8.2□□□□□ -1.1
LIMA1-202ENST00000394943 CHURC1Q8WUH1 139 aa8.2□□□□□ -1.1
LIMA1-202ENST00000394943 RPTORQ8N122 1335 aa8.2□□□□□ -1.1
LIMA1-202ENST00000394943 SLC25A27O95847 323 aa8.2□□□□□ -1.1
LIMA1-202ENST00000394943 ICAM1P05362 532 aa8.2□□□□□ -1.1
LIMA1-202ENST00000394943 FANCBQ8NB91 859 aa8.2□□□□□ -1.1
LIMA1-202ENST00000394943 GTF3C6Q969F1 213 aa8.2□□□□□ -1.1
LIMA1-202ENST00000394943 UBAC1Q9BSL1 405 aa8.2□□□□□ -1.1
LIMA1-202ENST00000394943 RNF26Q9BY78 433 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-202ENST00000394943 KAT14Q9H8E8 782 aa8.2□□□□□ -1.1
LIMA1-202ENST00000394943 PRDM10Q9NQV6 1147 aa8.2□□□□□ -1.1
LIMA1-202ENST00000394943 PDRG1Q9NUG6 133 aa8.2□□□□□ -1.1
LIMA1-202ENST00000394943 IFIT3O14879 490 aaKnown RBP8.19□□□□□ -1.1
LIMA1-202ENST00000394943 CTDNEP1O95476 244 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 AK2P54819 239 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 HMGCS2P54868 508 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 HERVK_113P62684 666 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 CRYGNQ8WXF5 182 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 INTS4Q96HW7 963 aaKnown RBP8.19□□□□□ -1.1
LIMA1-202ENST00000394943 JMJD4Q9H9V9 463 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 TPCN1Q9ULQ1 816 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 AOC2O75106 756 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 HSD17B4P51659 736 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 STAT2P52630 851 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 PKN1Q16512 942 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 SYDE2Q5VT97 1194 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 CHST13Q8NET6 341 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 CLEC4DQ8WXI8 215 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 PRR12Q9ULL5 1215 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 ABT1Q9ULW3 272 aaKnown RBP8.19□□□□□ -1.1
LIMA1-202ENST00000394943 OPLAHO14841 1288 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 FMNL1O95466 1100 aaPredicted RBP8.19□□□□□ -1.1
LIMA1-202ENST00000394943 DDIT3P35638 169 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 TRAF1Q13077 416 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 GRB14Q14449 540 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 RAB3GAP1Q15042 981 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 CATIPQ7Z7H3 387 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 CLEC10AQ8IUN9 316 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 ZFYVE28Q9HCC9 887 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 BTBD7Q9P203 1132 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 NRBP1Q9UHY1 535 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 GJD2Q9UKL4 321 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 ABCB11O95342 1321 aa8.19□□□□□ -1.1
LIMA1-202ENST00000394943 CDC27P30260 824 aa8.18□□□□□ -1.1
LIMA1-202ENST00000394943 KIF5BP33176 963 aa8.18□□□□□ -1.1
LIMA1-202ENST00000394943 CCDC96Q2M329 555 aa8.18□□□□□ -1.1
LIMA1-202ENST00000394943 SRBD1Q8N5C6 995 aaKnown RBP8.18□□□□□ -1.1
LIMA1-202ENST00000394943 P2RX7Q99572 595 aaKnown RBP8.18□□□□□ -1.1
LIMA1-202ENST00000394943 MROH8Q9H579 483 aa8.18□□□□□ -1.1
LIMA1-202ENST00000394943 PPP1R11O60927 126 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-202ENST00000394943 PARP1P09874 1014 aaKnown RBP8.18□□□□□ -1.1
LIMA1-202ENST00000394943 HSPA8P11142 646 aaKnown RBP8.18□□□□□ -1.1
LIMA1-202ENST00000394943 XRCC5P13010 732 aaKnown RBP8.18□□□□□ -1.1
LIMA1-202ENST00000394943 TMEM132BQ14DG7 1078 aa8.18□□□□□ -1.1
LIMA1-202ENST00000394943 FAM83BQ5T0W9 1011 aa8.18□□□□□ -1.1
LIMA1-202ENST00000394943 SHISA4Q96DD7 197 aa8.18□□□□□ -1.1
LIMA1-202ENST00000394943 GPHNQ9NQX3 736 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-202ENST00000394943 LIMCH1Q9UPQ0 1083 aa8.18□□□□□ -1.1
LIMA1-202ENST00000394943 PNMA6FA0A0J9YX94 578 aa8.18□□□□□ -1.1
LIMA1-202ENST00000394943 CCDC196A0A1B0GTZ2 297 aa8.18□□□□□ -1.1
LIMA1-202ENST00000394943 ERICH2A1L162 156 aa8.18□□□□□ -1.1
LIMA1-202ENST00000394943 EDNRBP24530 442 aa8.18□□□□□ -1.1
LIMA1-202ENST00000394943 OLFML2BQ68BL8 750 aa8.18□□□□□ -1.1
LIMA1-202ENST00000394943 MCTP2Q6DN12 878 aa8.18□□□□□ -1.1
LIMA1-202ENST00000394943 MAMDC4Q6UXC1 1216 aa8.18□□□□□ -1.1
LIMA1-202ENST00000394943 ADGRF4Q8IZF3 695 aa8.18□□□□□ -1.1
LIMA1-202ENST00000394943 FGD4Q96M96 766 aa8.18□□□□□ -1.1
LIMA1-202ENST00000394943 ZBTB5O15062 677 aa8.17□□□□□ -1.1
LIMA1-202ENST00000394943 ERVK-9P63128 1117 aa8.17□□□□□ -1.1
LIMA1-202ENST00000394943 ERVK-24P63145 666 aa8.17□□□□□ -1.1
LIMA1-202ENST00000394943 SCRN1Q12765 414 aa8.17□□□□□ -1.1
LIMA1-202ENST00000394943 CRHR2Q13324 411 aa8.17□□□□□ -1.1
LIMA1-202ENST00000394943 NPY5RQ15761 445 aa8.17□□□□□ -1.1
LIMA1-202ENST00000394943 PFKFB3Q16875 520 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-202ENST00000394943 TXNRD2Q9NNW7 524 aa8.17□□□□□ -1.1
LIMA1-202ENST00000394943 RBM47A0AV96 593 aaKnown RBP8.17□□□□□ -1.1
LIMA1-202ENST00000394943 TRIM75PA6NK02 468 aa8.17□□□□□ -1.1
LIMA1-202ENST00000394943 ZBTB43O43298 467 aa8.17□□□□□ -1.1
LIMA1-202ENST00000394943 STRNO43815 780 aa8.17□□□□□ -1.1
LIMA1-202ENST00000394943 PDIA4P13667 645 aaKnown RBP8.17□□□□□ -1.1
LIMA1-202ENST00000394943 CTGFP29279 349 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms