RNA–Protein interactions for RNA: ENST00000389373.3

IFT88-203, Transcript of intraflagellar transport 88, humanhuman

TSL 4

Gene IFT88, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT88-203ENST00000389373 VCPKMTQ9H867 229 aa11.69□□□□□ -0.54
IFT88-203ENST00000389373 DBNLQ9UJU6 430 aaKnown RBP11.69□□□□□ -0.54
IFT88-203ENST00000389373 TNNQ9UQP3 1299 aa11.69□□□□□ -0.54
IFT88-203ENST00000389373 TMX2Q9Y320 296 aa11.69□□□□□ -0.54
IFT88-203ENST00000389373 MYO5AQ9Y4I1 1855 aaKnown RBP11.68□□□□□ -0.54
IFT88-203ENST00000389373 CDH23Q9H251 3354 aa11.68□□□□□ -0.54
IFT88-203ENST00000389373 ZBBXA8MT70 800 aa11.68□□□□□ -0.54
IFT88-203ENST00000389373 VWA5AO00534 786 aa11.68□□□□□ -0.54
IFT88-203ENST00000389373 DUSP11O75319 330 aaKnown RBP11.68□□□□□ -0.54
IFT88-203ENST00000389373 SNAI1O95863 264 aaPredicted RBP11.68□□□□□ -0.54
IFT88-203ENST00000389373 AKR1B1P15121 316 aa11.68□□□□□ -0.54
IFT88-203ENST00000389373 TMEM31Q5JXX7 168 aa11.68□□□□□ -0.54
IFT88-203ENST00000389373 SIAH1Q8IUQ4 282 aa11.68□□□□□ -0.54
IFT88-203ENST00000389373 SDR42E1Q8WUS8 393 aa11.68□□□□□ -0.54
IFT88-203ENST00000389373 FRAT1Q92837 279 aaPredicted RBP11.68□□□□□ -0.54
IFT88-203ENST00000389373 CLUAP1Q96AJ1 413 aa11.68□□□□□ -0.54
IFT88-203ENST00000389373 RIOK1Q9BRS2 568 aaKnown RBP11.68□□□□□ -0.54
IFT88-203ENST00000389373 CERS4Q9HA82 394 aa11.68□□□□□ -0.54
IFT88-203ENST00000389373 TTC28Q96AY4 2481 aa11.68□□□□□ -0.54
IFT88-203ENST00000389373 FAM86C2PA6NEL3 165 aa11.67□□□□□ -0.54
IFT88-203ENST00000389373 CT47B1P0C2W7 299 aaPredicted RBP11.67□□□□□ -0.54
IFT88-203ENST00000389373 RARSP54136 660 aaKnown RBP11.67□□□□□ -0.54
IFT88-203ENST00000389373 ACVR2BQ13705 512 aa11.67□□□□□ -0.54
IFT88-203ENST00000389373 NOL8Q76FK4 1167 aaKnown RBP11.67□□□□□ -0.54
IFT88-203ENST00000389373 ALYREFQ86V81 257 aaKnown RBP11.67□□□□□ -0.54
IFT88-203ENST00000389373 FAM126BQ8IXS8 530 aa11.67□□□□□ -0.54
IFT88-203ENST00000389373 ARHGAP45Q92619 1136 aa11.67□□□□□ -0.54
IFT88-203ENST00000389373 HIPK3Q9H422 1215 aa11.67□□□□□ -0.54
IFT88-203ENST00000389373 CTDP1Q9Y5B0 961 aaPredicted RBP11.67□□□□□ -0.54
IFT88-203ENST00000389373 SLC4A7Q9Y6M7 1214 aa11.67□□□□□ -0.54
IFT88-203ENST00000389373 ZNFX1Q9P2E3 1918 aaKnown RBP11.66□□□□□ -0.54
IFT88-203ENST00000389373 UMODL1Q5DID0 1318 aa11.66□□□□□ -0.54
IFT88-203ENST00000389373 GTPBP6O43824 516 aaPredicted RBP11.66□□□□□ -0.54
IFT88-203ENST00000389373 EEF2P13639 858 aaKnown RBP11.66□□□□□ -0.54
IFT88-203ENST00000389373 COPB2P35606 906 aa11.66□□□□□ -0.54
IFT88-203ENST00000389373 BEX3Q00994 111 aa11.66□□□□□ -0.54
IFT88-203ENST00000389373 POLA2Q14181 598 aa11.66□□□□□ -0.54
IFT88-203ENST00000389373 CCDC144BQ3MJ40 725 aa11.66□□□□□ -0.54
IFT88-203ENST00000389373 FAM83BQ5T0W9 1011 aa11.66□□□□□ -0.54
IFT88-203ENST00000389373 CPXCR1Q8N123 301 aa11.66□□□□□ -0.54
IFT88-203ENST00000389373 EAF2Q96CJ1 260 aaPredicted RBP11.66□□□□□ -0.54
IFT88-203ENST00000389373 BCL11AQ9H165 835 aa11.66□□□□□ -0.54
IFT88-203ENST00000389373 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.66□□□□□ -0.54
IFT88-203ENST00000389373 SWAP70Q9UH65 585 aa11.66□□□□□ -0.54
IFT88-203ENST00000389373 PPP1R9AQ9ULJ8 1098 aa11.66□□□□□ -0.54
IFT88-203ENST00000389373 ADAMTS5Q9UNA0 930 aa11.66□□□□□ -0.54
IFT88-203ENST00000389373 ROBO3Q96MS0 1386 aa11.66□□□□□ -0.54
IFT88-203ENST00000389373 SYNGAP1Q96PV0 1343 aa11.65□□□□□ -0.54
IFT88-203ENST00000389373 ERC2O15083 957 aa11.65□□□□□ -0.54
IFT88-203ENST00000389373 IPO8O15397 1037 aaKnown RBP11.65□□□□□ -0.54
IFT88-203ENST00000389373 ADCY6O43306 1168 aa11.65□□□□□ -0.54
IFT88-203ENST00000389373 CST5P28325 142 aaPredicted RBP11.65□□□□□ -0.54
IFT88-203ENST00000389373 GJA9P57773 515 aa11.65□□□□□ -0.54
IFT88-203ENST00000389373 ATP8B2P98198 1209 aa11.65□□□□□ -0.54
IFT88-203ENST00000389373 SLC9C2Q5TAH2 1124 aa11.65□□□□□ -0.54
IFT88-203ENST00000389373 KRT40Q6A162 431 aa11.65□□□□□ -0.54
IFT88-203ENST00000389373 SNRNP48Q6IEG0 339 aaKnown RBP11.65□□□□□ -0.54
IFT88-203ENST00000389373 RPUSD2Q8IZ73 545 aaKnown RBP11.65□□□□□ -0.54
IFT88-203ENST00000389373 MSL3Q8N5Y2 521 aaKnown RBP11.65□□□□□ -0.54
IFT88-203ENST00000389373 C1orf115Q9H7X2 142 aa11.65□□□□□ -0.54
IFT88-203ENST00000389373 GOPCQ9HD26 462 aa11.65□□□□□ -0.54
IFT88-203ENST00000389373 DCP1AQ9NPI6 582 aaPredicted RBP11.65□□□□□ -0.54
IFT88-203ENST00000389373 ZNF214Q9UL59 606 aaPredicted RBP11.65□□□□□ -0.54
IFT88-203ENST00000389373 ARIH1Q9Y4X5 557 aaPredicted RBP11.65□□□□□ -0.54
IFT88-203ENST00000389373 A0A0G2JMZ2 1700 aa11.65□□□□□ -0.54
IFT88-203ENST00000389373 ZNF532Q9HCE3 1301 aa11.64□□□□□ -0.55
IFT88-203ENST00000389373 CYP2D7A0A087X1C5 515 aa11.64□□□□□ -0.55
IFT88-203ENST00000389373 CD4P01730 458 aa11.64□□□□□ -0.55
IFT88-203ENST00000389373 TRIM27P14373 513 aa11.64□□□□□ -0.55
IFT88-203ENST00000389373 PDE6AP16499 860 aa11.64□□□□□ -0.55
IFT88-203ENST00000389373 ATP2A2P16615 1042 aaKnown RBP11.64□□□□□ -0.55
IFT88-203ENST00000389373 CDK8P49336 464 aa11.64□□□□□ -0.55
IFT88-203ENST00000389373 CXCL17Q6UXB2 119 aa11.64□□□□□ -0.55
IFT88-203ENST00000389373 MAMDC4Q6UXC1 1216 aa11.64□□□□□ -0.55
IFT88-203ENST00000389373 TRMT2AQ8IZ69 625 aaKnown RBP11.64□□□□□ -0.55
IFT88-203ENST00000389373 ANKRD35Q8N283 1001 aa11.64□□□□□ -0.55
IFT88-203ENST00000389373 LCORLQ8N3X6 602 aa11.64□□□□□ -0.55
IFT88-203ENST00000389373 REPS2Q8NFH8 660 aa11.64□□□□□ -0.55
IFT88-203ENST00000389373 SSH3Q8TE77 659 aa11.64□□□□□ -0.55
IFT88-203ENST00000389373 SCLYQ96I15 445 aa11.64□□□□□ -0.55
IFT88-203ENST00000389373 CCDC17Q96LX7 622 aa11.64□□□□□ -0.55
IFT88-203ENST00000389373 NUP88Q99567 741 aaPredicted RBP11.64□□□□□ -0.55
IFT88-203ENST00000389373 UPF3AQ9H1J1 476 aaKnown RBP11.64□□□□□ -0.55
IFT88-203ENST00000389373 ARMT1Q9H993 441 aa11.64□□□□□ -0.55
IFT88-203ENST00000389373 RIPK3Q9Y572 518 aa11.64□□□□□ -0.55
IFT88-203ENST00000389373 PCDHA11Q9Y5I1 949 aa11.64□□□□□ -0.55
IFT88-203ENST00000389373 MTCH2Q9Y6C9 303 aa11.64□□□□□ -0.55
IFT88-203ENST00000389373 MYO9BQ13459 2157 aa11.63□□□□□ -0.55
IFT88-203ENST00000389373 SMIM22K7EJ46 135 aa11.63□□□□□ -0.55
IFT88-203ENST00000389373 PRKAB2O43741 272 aa11.63□□□□□ -0.55
IFT88-203ENST00000389373 TLL1O43897 1013 aa11.63□□□□□ -0.55
IFT88-203ENST00000389373 ITGA7Q13683 1181 aa11.63□□□□□ -0.55
IFT88-203ENST00000389373 TTF1Q15361 905 aaPredicted RBP11.63□□□□□ -0.55
IFT88-203ENST00000389373 TMEM67Q5HYA8 995 aa11.63□□□□□ -0.55
IFT88-203ENST00000389373 AACSQ86V21 672 aa11.63□□□□□ -0.55
IFT88-203ENST00000389373 AMOTL1Q8IY63 956 aa11.63□□□□□ -0.55
IFT88-203ENST00000389373 KHSRPQ92945 711 aaKnown RBP eCLIP11.63□□□□□ -0.55
IFT88-203ENST00000389373 DNAJC2Q99543 621 aaKnown RBP11.63□□□□□ -0.55
IFT88-203ENST00000389373 SLF1Q9BQI6 1058 aa11.63□□□□□ -0.55
IFT88-203ENST00000389373 TEX13BQ9BXU2 312 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms