RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 TROAPQ12815 778 aa18.36■□□□□ 0.53
NKX3-1-201ENST00000380871 SEPT12Q8IYM1 358 aa18.36■□□□□ 0.53
NKX3-1-201ENST00000380871 ATP8B1O43520 1251 aa18.35■□□□□ 0.53
NKX3-1-201ENST00000380871 TNFRSF25Q93038 417 aa18.35■□□□□ 0.53
NKX3-1-201ENST00000380871 GSDMAQ96QA5 445 aa18.35■□□□□ 0.53
NKX3-1-201ENST00000380871 SLF1Q9BQI6 1058 aa18.35■□□□□ 0.53
NKX3-1-201ENST00000380871 PDE11AQ9HCR9 933 aa18.35■□□□□ 0.53
NKX3-1-201ENST00000380871 GDAQ9Y2T3 454 aa18.35■□□□□ 0.53
NKX3-1-201ENST00000380871 CCDC151A5D8V7 595 aa18.35■□□□□ 0.53
NKX3-1-201ENST00000380871 RC3H1Q5TC82 1133 aaKnown RBP18.35■□□□□ 0.53
NKX3-1-201ENST00000380871 STAG2Q8N3U4 1231 aa18.35■□□□□ 0.53
NKX3-1-201ENST00000380871 KAT14Q9H8E8 782 aa18.35■□□□□ 0.53
NKX3-1-201ENST00000380871 VAT1LQ9HCJ6 419 aa18.35■□□□□ 0.53
NKX3-1-201ENST00000380871 NUP88Q99567 741 aaPredicted RBP18.34■□□□□ 0.53
NKX3-1-201ENST00000380871 ABHD10Q9NUJ1 306 aa18.34■□□□□ 0.53
NKX3-1-201ENST00000380871 RNF216Q9NWF9 866 aaPredicted RBP18.34■□□□□ 0.53
NKX3-1-201ENST00000380871 ANAPC4Q9UJX5 808 aa18.34■□□□□ 0.53
NKX3-1-201ENST00000380871 CAPN2P17655 700 aa18.34■□□□□ 0.53
NKX3-1-201ENST00000380871 GPSM2P81274 684 aa18.34■□□□□ 0.53
NKX3-1-201ENST00000380871 E2F4Q16254 413 aa18.34■□□□□ 0.53
NKX3-1-201ENST00000380871 FILIP1LQ4L180 1135 aa18.34■□□□□ 0.53
NKX3-1-201ENST00000380871 BEND6Q5SZJ8 279 aaPredicted RBP18.34■□□□□ 0.53
NKX3-1-201ENST00000380871 GJD4Q96KN9 370 aaPredicted RBP18.34■□□□□ 0.53
NKX3-1-201ENST00000380871 CHP1Q99653 195 aa18.34■□□□□ 0.53
NKX3-1-201ENST00000380871 CICQ96RK0 1608 aaPredicted RBP18.34■□□□□ 0.53
NKX3-1-201ENST00000380871 CTAGE9A4FU28 777 aa18.34■□□□□ 0.53
NKX3-1-201ENST00000380871 PRPF3O43395 683 aaKnown RBP18.34■□□□□ 0.53
NKX3-1-201ENST00000380871 NCAPH2Q6IBW4 605 aa18.34■□□□□ 0.53
NKX3-1-201ENST00000380871 EEF2KMTQ96G04 330 aa18.34■□□□□ 0.53
NKX3-1-201ENST00000380871 ABCB6Q9NP58 842 aa18.34■□□□□ 0.53
NKX3-1-201ENST00000380871 TRIM49BA6NDI0 452 aa18.33■□□□□ 0.53
NKX3-1-201ENST00000380871 ARHGAP25P42331 645 aa18.33■□□□□ 0.53
NKX3-1-201ENST00000380871 FAM193AP78312 1265 aa18.33■□□□□ 0.53
NKX3-1-201ENST00000380871 NOA1Q8NC60 698 aaKnown RBP18.33■□□□□ 0.53
NKX3-1-201ENST00000380871 FERMT2Q96AC1 680 aa18.33■□□□□ 0.53
NKX3-1-201ENST00000380871 NAA15Q9BXJ9 866 aaKnown RBP18.33■□□□□ 0.53
NKX3-1-201ENST00000380871 ADAM21Q9UKJ8 722 aa18.33■□□□□ 0.53
NKX3-1-201ENST00000380871 TRIM37O94972 964 aa18.33■□□□□ 0.52
NKX3-1-201ENST00000380871 VSNL1P62760 191 aa18.33■□□□□ 0.52
NKX3-1-201ENST00000380871 GRAPQ13588 217 aa18.33■□□□□ 0.52
NKX3-1-201ENST00000380871 PRR5LQ6MZQ0 368 aa18.33■□□□□ 0.52
NKX3-1-201ENST00000380871 PDXDC2PQ6P474 469 aa18.33■□□□□ 0.52
NKX3-1-201ENST00000380871 CNGA4Q8IV77 575 aa18.33■□□□□ 0.52
NKX3-1-201ENST00000380871 ZNF444Q8N0Y2 327 aaPredicted RBP18.33■□□□□ 0.52
NKX3-1-201ENST00000380871 GRAPLQ8TC17 118 aaPredicted RBP18.33■□□□□ 0.52
NKX3-1-201ENST00000380871 ZFP91Q96JP5 570 aaPredicted RBP18.33■□□□□ 0.52
NKX3-1-201ENST00000380871 BRMS1Q9HCU9 246 aa18.33■□□□□ 0.52
NKX3-1-201ENST00000380871 MAP2K7O14733 419 aa18.33■□□□□ 0.52
NKX3-1-201ENST00000380871 TSPY3P0CV98 308 aa18.33■□□□□ 0.52
NKX3-1-201ENST00000380871 TSPY8P0CW00 308 aa18.33■□□□□ 0.52
NKX3-1-201ENST00000380871 LMAN1P49257 510 aa18.33■□□□□ 0.52
NKX3-1-201ENST00000380871 ATP2C1P98194 919 aaPredicted RBP18.33■□□□□ 0.52
NKX3-1-201ENST00000380871 TMTC3Q6ZXV5 915 aa18.33■□□□□ 0.52
NKX3-1-201ENST00000380871 CTAGE1Q96RT6 745 aa18.33■□□□□ 0.52
NKX3-1-201ENST00000380871 PLIN2Q99541 437 aa18.33■□□□□ 0.52
NKX3-1-201ENST00000380871 NELFBQ8WX92 580 aa18.32■□□□□ 0.52
NKX3-1-201ENST00000380871 ATP8A2Q9NTI2 1148 aa18.32■□□□□ 0.52
NKX3-1-201ENST00000380871 TMEM51Q9NW97 253 aa18.32■□□□□ 0.52
NKX3-1-201ENST00000380871 AFF2P51816 1311 aa18.32■□□□□ 0.52
NKX3-1-201ENST00000380871 CNTNAP5Q8WYK1 1306 aa18.32■□□□□ 0.52
NKX3-1-201ENST00000380871 COL22A1Q8NFW1 1626 aaPredicted RBP18.32■□□□□ 0.52
NKX3-1-201ENST00000380871 SERPINB2P05120 415 aa18.32■□□□□ 0.52
NKX3-1-201ENST00000380871 COPB1P53618 953 aaKnown RBP18.32■□□□□ 0.52
NKX3-1-201ENST00000380871 RCAN1P53805 252 aa18.32■□□□□ 0.52
NKX3-1-201ENST00000380871 FNBP4Q8N3X1 1017 aaPredicted RBP18.32■□□□□ 0.52
NKX3-1-201ENST00000380871 LTBP4Q8N2S1 1624 aa18.32■□□□□ 0.52
NKX3-1-201ENST00000380871 KRT9P35527 623 aa18.31■□□□□ 0.52
NKX3-1-201ENST00000380871 RAD51AP2Q09MP3 1159 aa18.31■□□□□ 0.52
NKX3-1-201ENST00000380871 PICALMQ13492 652 aa18.31■□□□□ 0.52
NKX3-1-201ENST00000380871 JAKMIP3Q5VZ66 844 aa18.31■□□□□ 0.52
NKX3-1-201ENST00000380871 SPTY2D1Q68D10 685 aaPredicted RBP18.31■□□□□ 0.52
NKX3-1-201ENST00000380871 VPS18Q9P253 973 aa18.31■□□□□ 0.52
NKX3-1-201ENST00000380871 KCNJ18B7U540 433 aa18.31■□□□□ 0.52
NKX3-1-201ENST00000380871 ENC1O14682 589 aa18.31■□□□□ 0.52
NKX3-1-201ENST00000380871 SEMA3EO15041 775 aa18.31■□□□□ 0.52
NKX3-1-201ENST00000380871 KCNJ12Q14500 433 aa18.31■□□□□ 0.52
NKX3-1-201ENST00000380871 BRD3Q15059 726 aa18.31■□□□□ 0.52
NKX3-1-201ENST00000380871 ZNF219Q9P2Y4 722 aaPredicted RBP18.31■□□□□ 0.52
NKX3-1-201ENST00000380871 HDAC6Q9UBN7 1215 aa18.31■□□□□ 0.52
NKX3-1-201ENST00000380871 REXO2Q9Y3B8 237 aaKnown RBP18.31■□□□□ 0.52
NKX3-1-201ENST00000380871 PP2D1A8MPX8 630 aa18.31■□□□□ 0.52
NKX3-1-201ENST00000380871 PMS1P54277 932 aaKnown RBP18.31■□□□□ 0.52
NKX3-1-201ENST00000380871 PAK1Q13153 545 aa18.31■□□□□ 0.52
NKX3-1-201ENST00000380871 TCP11X2Q5H9J9 407 aa18.31■□□□□ 0.52
NKX3-1-201ENST00000380871 CEP112Q8N8E3 955 aa18.31■□□□□ 0.52
NKX3-1-201ENST00000380871 PNMA1Q8ND90 353 aa18.31■□□□□ 0.52
NKX3-1-201ENST00000380871 RASSF8Q8NHQ8 419 aa18.31■□□□□ 0.52
NKX3-1-201ENST00000380871 DUOX1Q9NRD9 1551 aa18.3■□□□□ 0.52
NKX3-1-201ENST00000380871 EP400Q96L91 3159 aa18.3■□□□□ 0.52
NKX3-1-201ENST00000380871 PES1O00541 588 aaKnown RBP18.3■□□□□ 0.52
NKX3-1-201ENST00000380871 ZNF804AQ7Z570 1209 aa18.3■□□□□ 0.52
NKX3-1-201ENST00000380871 IQUBQ8NA54 791 aa18.3■□□□□ 0.52
NKX3-1-201ENST00000380871 LIMA1Q9UHB6 759 aaKnown RBP18.3■□□□□ 0.52
NKX3-1-201ENST00000380871 GUCA1BQ9UMX6 200 aa18.3■□□□□ 0.52
NKX3-1-201ENST00000380871 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.3■□□□□ 0.52
NKX3-1-201ENST00000380871 PHACTR2O75167 634 aa18.3■□□□□ 0.52
NKX3-1-201ENST00000380871 PRCPP42785 496 aa18.3■□□□□ 0.52
NKX3-1-201ENST00000380871 EIF6P56537 245 aaKnown RBP18.3■□□□□ 0.52
NKX3-1-201ENST00000380871 MAPK8IP2Q13387 824 aaPredicted RBP18.3■□□□□ 0.52
NKX3-1-201ENST00000380871 HEATR3Q7Z4Q2 680 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms