RNA–Protein interactions for RNA: ENST00000380393.7

PTPRA-204, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 1 (best) BASIC

Gene PTPRA, Length 3,636 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-204ENST00000380393 FTOQ9C0B1 505 aaKnown RBP eCLIP10.4□□□□□ -0.74
PTPRA-204ENST00000380393 CBFA2T2O43439 604 aa10.4□□□□□ -0.75
PTPRA-204ENST00000380393 TMCC1O94876 653 aa10.4□□□□□ -0.75
PTPRA-204ENST00000380393 ATP1A3P13637 1013 aa10.4□□□□□ -0.75
PTPRA-204ENST00000380393 MAP3K12Q12852 859 aa10.4□□□□□ -0.75
PTPRA-204ENST00000380393 RBM26Q5T8P6 1007 aaKnown RBP10.4□□□□□ -0.75
PTPRA-204ENST00000380393 NCAPH2Q6IBW4 605 aa10.4□□□□□ -0.75
PTPRA-204ENST00000380393 ZBTB8BQ8NAP8 495 aaPredicted RBP10.4□□□□□ -0.75
PTPRA-204ENST00000380393 HVCN1Q96D96 273 aa10.4□□□□□ -0.75
PTPRA-204ENST00000380393 CYFIP2Q96F07 1278 aa10.4□□□□□ -0.75
PTPRA-204ENST00000380393 RNPC3Q96LT9 517 aaKnown RBP10.4□□□□□ -0.75
PTPRA-204ENST00000380393 SURF6O75683 361 aaKnown RBP10.39□□□□□ -0.75
PTPRA-204ENST00000380393 DNAJC8O75937 253 aaPredicted RBP10.39□□□□□ -0.75
PTPRA-204ENST00000380393 PDCP20941 246 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 HOXC9P31274 260 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 STAT6P42226 847 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 ADAM9Q13443 819 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 NCCRP1Q6ZVX7 275 aaPredicted RBP10.39□□□□□ -0.75
PTPRA-204ENST00000380393 MAEAQ7L5Y9 396 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 APLFQ8IW19 511 aaPredicted RBP10.39□□□□□ -0.75
PTPRA-204ENST00000380393 IWS1Q96ST2 819 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 POLR3CQ9BUI4 534 aaPredicted RBP10.39□□□□□ -0.75
PTPRA-204ENST00000380393 RABL2AQ9UBK7 228 aaPredicted RBP10.39□□□□□ -0.75
PTPRA-204ENST00000380393 DYTNA2CJ06 578 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 EIF3FO00303 357 aaPredicted RBP10.39□□□□□ -0.75
PTPRA-204ENST00000380393 STX10O60499 249 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 SUPT3HO75486 399 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 ABL1P00519 1130 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 TRPC1P48995 793 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 TUBP50607 506 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 SND1Q7KZF4 910 aaKnown RBP eCLIP10.39□□□□□ -0.75
PTPRA-204ENST00000380393 SAMD3Q8N6K7 520 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 CCDC63Q8NA47 563 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 DDX27Q96GQ7 796 aaKnown RBP10.39□□□□□ -0.75
PTPRA-204ENST00000380393 NAF1Q96HR8 494 aaKnown RBP10.39□□□□□ -0.75
PTPRA-204ENST00000380393 FGD4Q96M96 766 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 SDF4Q9BRK5 362 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 TMCO1Q9UM00 188 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 NRKQ7Z2Y5 1582 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 hCG_2014768A0A024R1R8 64 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 MRPS35P82673 323 aaKnown RBP10.39□□□□□ -0.75
PTPRA-204ENST00000380393 TTMPQ5BVD1 217 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 ANKRD20A2Q5SQ80 823 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 ANKRD20A1Q5TYW2 823 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 ANKRD20A3Q5VUR7 823 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 PI16Q6UXB8 463 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 LMNTD2Q8IXW0 634 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 UHMK1Q8TAS1 419 aaKnown RBP10.39□□□□□ -0.75
PTPRA-204ENST00000380393 DPF2Q92785 391 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 EYA1Q99502 592 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 CENPOQ9BU64 300 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 PPANQ9NQ55 473 aaKnown RBP10.39□□□□□ -0.75
PTPRA-204ENST00000380393 LNPEPQ9UIQ6 1025 aa10.39□□□□□ -0.75
PTPRA-204ENST00000380393 KAT6BQ8WYB5 2073 aa10.38□□□□□ -0.75
PTPRA-204ENST00000380393 UBN2Q6ZU65 1347 aa10.38□□□□□ -0.75
PTPRA-204ENST00000380393 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.38□□□□□ -0.75
PTPRA-204ENST00000380393 PALM3A6NDB9 673 aaPredicted RBP10.38□□□□□ -0.75
PTPRA-204ENST00000380393 NDUFB5O43674 189 aa10.38□□□□□ -0.75
PTPRA-204ENST00000380393 MTX1Q13505 466 aa10.38□□□□□ -0.75
PTPRA-204ENST00000380393 TCERG1LQ5VWI1 586 aa10.38□□□□□ -0.75
PTPRA-204ENST00000380393 SLC35F6Q8N357 371 aa10.38□□□□□ -0.75
PTPRA-204ENST00000380393 C8orf76Q96K31 380 aa10.38□□□□□ -0.75
PTPRA-204ENST00000380393 SEC62Q99442 399 aaKnown RBP10.38□□□□□ -0.75
PTPRA-204ENST00000380393 NAPGQ99747 312 aaPredicted RBP10.38□□□□□ -0.75
PTPRA-204ENST00000380393 GMEB1Q9Y692 573 aa10.38□□□□□ -0.75
PTPRA-204ENST00000380393 COL3A1P02461 1466 aaPredicted RBP10.38□□□□□ -0.75
PTPRA-204ENST00000380393 PNPLA6Q8IY17 1366 aa10.38□□□□□ -0.75
PTPRA-204ENST00000380393 PENKP01210 267 aaPredicted RBP10.38□□□□□ -0.75
PTPRA-204ENST00000380393 PDHA1P08559 390 aa10.38□□□□□ -0.75
PTPRA-204ENST00000380393 HDAC4P56524 1084 aa10.38□□□□□ -0.75
PTPRA-204ENST00000380393 MKRN4PQ13434 485 aaPredicted RBP10.38□□□□□ -0.75
PTPRA-204ENST00000380393 ERICH1Q86X53 443 aa10.38□□□□□ -0.75
PTPRA-204ENST00000380393 VSTM4Q8IW00 320 aa10.38□□□□□ -0.75
PTPRA-204ENST00000380393 PCDH18Q9HCL0 1135 aa10.38□□□□□ -0.75
PTPRA-204ENST00000380393 VIMP08670 466 aaKnown RBP10.38□□□□□ -0.75
PTPRA-204ENST00000380393 HARSP12081 509 aaKnown RBP10.38□□□□□ -0.75
PTPRA-204ENST00000380393 RIPK1Q13546 671 aa10.38□□□□□ -0.75
PTPRA-204ENST00000380393 ZNF394Q53GI3 561 aa10.38□□□□□ -0.75
PTPRA-204ENST00000380393 RNF220Q5VTB9 566 aa10.38□□□□□ -0.75
PTPRA-204ENST00000380393 WDR66Q8TBY9 1149 aa10.38□□□□□ -0.75
PTPRA-204ENST00000380393 NOC3LQ8WTT2 800 aaKnown RBP10.38□□□□□ -0.75
PTPRA-204ENST00000380393 HDAC7Q8WUI4 952 aa10.38□□□□□ -0.75
PTPRA-204ENST00000380393 TRPV5Q9NQA5 729 aa10.38□□□□□ -0.75
PTPRA-204ENST00000380393 SH2B1Q9NRF2 756 aaPredicted RBP10.38□□□□□ -0.75
PTPRA-204ENST00000380393 N6AMT1Q9Y5N5 214 aa10.38□□□□□ -0.75
PTPRA-204ENST00000380393 TMEM232C9JQI7 657 aa10.37□□□□□ -0.75
PTPRA-204ENST00000380393 YY1P25490 414 aa10.37□□□□□ -0.75
PTPRA-204ENST00000380393 STIP1P31948 543 aaKnown RBP10.37□□□□□ -0.75
PTPRA-204ENST00000380393 PCK1P35558 622 aa10.37□□□□□ -0.75
PTPRA-204ENST00000380393 PSMC4P43686 418 aa10.37□□□□□ -0.75
PTPRA-204ENST00000380393 ADKP55263 362 aaKnown RBP10.37□□□□□ -0.75
PTPRA-204ENST00000380393 NNTQ13423 1086 aa10.37□□□□□ -0.75
PTPRA-204ENST00000380393 ZMYM1Q5SVZ6 1142 aa10.37□□□□□ -0.75
PTPRA-204ENST00000380393 MAATS1Q7Z4T9 603 aa10.37□□□□□ -0.75
PTPRA-204ENST00000380393 KIFAP3Q92845 792 aa10.37□□□□□ -0.75
PTPRA-204ENST00000380393 CLIP3Q96DZ5 547 aa10.37□□□□□ -0.75
PTPRA-204ENST00000380393 ZSCAN31Q96LW9 406 aaPredicted RBP10.37□□□□□ -0.75
PTPRA-204ENST00000380393 SYT15Q9BQS2 421 aa10.37□□□□□ -0.75
PTPRA-204ENST00000380393 OXCT2Q9BYC2 517 aaPredicted RBP10.37□□□□□ -0.75
PTPRA-204ENST00000380393 PANK4Q9NVE7 773 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms