RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 IQCB1Q15051 598 aa12.27□□□□□ -0.45
NEDD9-201ENST00000379433 ZYXQ15942 572 aaKnown RBP12.27□□□□□ -0.45
NEDD9-201ENST00000379433 TTBK2Q6IQ55 1244 aa12.27□□□□□ -0.45
NEDD9-201ENST00000379433 SPICE1Q8N0Z3 855 aa12.27□□□□□ -0.45
NEDD9-201ENST00000379433 GJA10Q969M2 543 aa12.27□□□□□ -0.45
NEDD9-201ENST00000379433 TEKT1Q969V4 418 aa12.27□□□□□ -0.45
NEDD9-201ENST00000379433 C16orf45Q96MC5 204 aaPredicted RBP12.27□□□□□ -0.45
NEDD9-201ENST00000379433 PHF20Q9BVI0 1012 aa12.27□□□□□ -0.45
NEDD9-201ENST00000379433 ATF5Q9Y2D1 282 aaPredicted RBP12.27□□□□□ -0.45
NEDD9-201ENST00000379433 RPS6KL1Q9Y6S9 549 aa12.27□□□□□ -0.45
NEDD9-201ENST00000379433 CUTAO60888 179 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 DDAH1O94760 285 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 CFAP100Q494V2 611 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 WWC2Q6AWC2 1192 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 KRBA2Q6ZNG9 492 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 TMC6Q7Z403 805 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 TBC1D22AQ8WUA7 517 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 AKT1S1Q96B36 256 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 COA1Q9GZY4 146 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 MKRN1Q9UHC7 482 aaKnown RBP12.26□□□□□ -0.45
NEDD9-201ENST00000379433 LAMB2P55268 1798 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 TCP10L2B9ZVM9 353 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 PES1O00541 588 aaKnown RBP12.26□□□□□ -0.45
NEDD9-201ENST00000379433 ECE2O60344 883 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 HOXA10P31260 410 aaPredicted RBP12.26□□□□□ -0.45
NEDD9-201ENST00000379433 SBK1Q52WX2 424 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 CDC42EP5Q6NZY7 148 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 SLF2Q8IX21 1173 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 VEZTQ9HBM0 779 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 ZNF277Q9NRM2 450 aaPredicted RBP12.26□□□□□ -0.45
NEDD9-201ENST00000379433 SEC63Q9UGP8 760 aaKnown RBP12.26□□□□□ -0.45
NEDD9-201ENST00000379433 MAD2L2Q9UI95 211 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 FBXO2Q9UK22 296 aaPredicted RBP12.26□□□□□ -0.45
NEDD9-201ENST00000379433 STK36Q9NRP7 1315 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 BCORQ6W2J9 1755 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 A0A087X0B3 334 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 SF3B2Q13435 895 aaKnown RBP12.26□□□□□ -0.45
NEDD9-201ENST00000379433 SLC35G1Q2M3R5 365 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 MFSD4BQ5TF39 518 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 RESP18Q5W5W9 173 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 STK32BQ9NY57 414 aa12.26□□□□□ -0.45
NEDD9-201ENST00000379433 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.26□□□□□ -0.45
NEDD9-201ENST00000379433 CRKP46108 304 aa12.25□□□□□ -0.45
NEDD9-201ENST00000379433 NOLC1Q14978 699 aaKnown RBP eCLIP12.25□□□□□ -0.45
NEDD9-201ENST00000379433 NUP88Q99567 741 aaPredicted RBP12.25□□□□□ -0.45
NEDD9-201ENST00000379433 XPO4Q9C0E2 1151 aaKnown RBP12.25□□□□□ -0.45
NEDD9-201ENST00000379433 ZNF287Q9HBT7 754 aa12.25□□□□□ -0.45
NEDD9-201ENST00000379433 TMEM260Q9NX78 707 aa12.25□□□□□ -0.45
NEDD9-201ENST00000379433 SERPINB13Q9UIV8 391 aa12.25□□□□□ -0.45
NEDD9-201ENST00000379433 CHD4Q14839 1912 aa12.25□□□□□ -0.45
NEDD9-201ENST00000379433 PPP6R2O75170 966 aa12.25□□□□□ -0.45
NEDD9-201ENST00000379433 PLCG2P16885 1265 aa12.25□□□□□ -0.45
NEDD9-201ENST00000379433 ERCC3P19447 782 aa12.25□□□□□ -0.45
NEDD9-201ENST00000379433 KARSQ15046 597 aaKnown RBP12.25□□□□□ -0.45
NEDD9-201ENST00000379433 BLIDQ8IZY5 108 aa12.25□□□□□ -0.45
NEDD9-201ENST00000379433 GTPBP4Q9BZE4 634 aaKnown RBP12.25□□□□□ -0.45
NEDD9-201ENST00000379433 FANCLQ9NW38 375 aa12.25□□□□□ -0.45
NEDD9-201ENST00000379433 NHSQ6T4R5 1651 aa12.25□□□□□ -0.45
NEDD9-201ENST00000379433 THSD7AQ9UPZ6 1657 aa12.24□□□□□ -0.45
NEDD9-201ENST00000379433 CCNT1O60563 726 aaKnown RBP12.24□□□□□ -0.45
NEDD9-201ENST00000379433 POSTNQ15063 836 aa12.24□□□□□ -0.45
NEDD9-201ENST00000379433 PFKFB3Q16875 520 aaPredicted RBP12.24□□□□□ -0.45
NEDD9-201ENST00000379433 CT47A1Q5JQC4 288 aaPredicted RBP12.24□□□□□ -0.45
NEDD9-201ENST00000379433 SOGA3Q5TF21 947 aa12.24□□□□□ -0.45
NEDD9-201ENST00000379433 RBM43Q6ZSC3 357 aaKnown RBP12.24□□□□□ -0.45
NEDD9-201ENST00000379433 CACTINQ8WUQ7 758 aaKnown RBP12.24□□□□□ -0.45
NEDD9-201ENST00000379433 SMARCE1Q969G3 411 aa12.24□□□□□ -0.45
NEDD9-201ENST00000379433 CEP131Q9UPN4 1083 aa12.24□□□□□ -0.45
NEDD9-201ENST00000379433 SMCO2A6NFE2 343 aa12.24□□□□□ -0.45
NEDD9-201ENST00000379433 PTPREP23469 700 aa12.24□□□□□ -0.45
NEDD9-201ENST00000379433 SLC15A2Q16348 729 aa12.24□□□□□ -0.45
NEDD9-201ENST00000379433 DGKHQ86XP1 1220 aa12.24□□□□□ -0.45
NEDD9-201ENST00000379433 SCN7AQ01118 1682 aa12.24□□□□□ -0.45
NEDD9-201ENST00000379433 DDTLA6NHG4 134 aaPredicted RBP12.24□□□□□ -0.45
NEDD9-201ENST00000379433 RIOK3O14730 519 aaKnown RBP12.24□□□□□ -0.45
NEDD9-201ENST00000379433 PLSCR1O15162 318 aa12.24□□□□□ -0.45
NEDD9-201ENST00000379433 PPP4CP60510 307 aa12.24□□□□□ -0.45
NEDD9-201ENST00000379433 SLC20A2Q08357 652 aa12.24□□□□□ -0.45
NEDD9-201ENST00000379433 CCDC84Q86UT8 332 aaPredicted RBP12.24□□□□□ -0.45
NEDD9-201ENST00000379433 MTA1Q13330 715 aa12.23□□□□□ -0.45
NEDD9-201ENST00000379433 UBE2SQ16763 222 aa12.23□□□□□ -0.45
NEDD9-201ENST00000379433 MIGA2Q7L4E1 593 aa12.23□□□□□ -0.45
NEDD9-201ENST00000379433 TMX1Q9H3N1 280 aa12.23□□□□□ -0.45
NEDD9-201ENST00000379433 BRWD3Q6RI45 1802 aa12.23□□□□□ -0.45
NEDD9-201ENST00000379433 TAF1LQ8IZX4 1826 aa12.23□□□□□ -0.45
NEDD9-201ENST00000379433 ZSCAN20P17040 1043 aaPredicted RBP12.23□□□□□ -0.45
NEDD9-201ENST00000379433 TNNI2P48788 182 aa12.23□□□□□ -0.45
NEDD9-201ENST00000379433 NLRP12P59046 1061 aa12.23□□□□□ -0.45
NEDD9-201ENST00000379433 NPY5RQ15761 445 aa12.23□□□□□ -0.45
NEDD9-201ENST00000379433 C16orf86Q6ZW13 317 aa12.23□□□□□ -0.45
NEDD9-201ENST00000379433 CPLX3Q8WVH0 158 aa12.23□□□□□ -0.45
NEDD9-201ENST00000379433 SBF2Q86WG5 1849 aa12.23□□□□□ -0.45
NEDD9-201ENST00000379433 HLA-DOAP06340 250 aa12.22□□□□□ -0.45
NEDD9-201ENST00000379433 USH1GQ495M9 461 aa12.22□□□□□ -0.45
NEDD9-201ENST00000379433 APOBEC3HQ6NTF7 200 aaKnown RBP12.22□□□□□ -0.45
NEDD9-201ENST00000379433 LARGE2Q8N3Y3 721 aa12.22□□□□□ -0.45
NEDD9-201ENST00000379433 DPF2Q92785 391 aa12.22□□□□□ -0.45
NEDD9-201ENST00000379433 RRP36Q96EU6 259 aaKnown RBP12.22□□□□□ -0.45
NEDD9-201ENST00000379433 TMEM60Q9H2L4 133 aa12.22□□□□□ -0.45
NEDD9-201ENST00000379433 FGRP09769 529 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms