RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 A0A1B0GVL5 298 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 GOLGA8MH3BSY2 632 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 RAPGEF1Q13905 1077 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 CCDC85BQ15834 202 aaPredicted RBP9.53□□□□□ -0.88
LIG3-202ENST00000378526 PLEKHO1Q53GL0 409 aaPredicted RBP9.53□□□□□ -0.88
LIG3-202ENST00000378526 ALG1Q9BT22 464 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 BLOC1S6Q9UL45 172 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 E7ENQ6 273 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 DAPK3O43293 454 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 IFNA8P32881 189 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 APOBRQ0VD83 1088 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 LRRC49Q8IUZ0 686 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 ZSCAN29Q8IWY8 852 aaPredicted RBP9.53□□□□□ -0.88
LIG3-202ENST00000378526 SYTL2Q9HCH5 934 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 NDUFA13Q9P0J0 144 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 FANCCQ00597 558 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 CNGA3Q16281 694 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 OLFML2BQ68BL8 750 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 CDR2LQ86X02 465 aaPredicted RBP9.53□□□□□ -0.88
LIG3-202ENST00000378526 DDHD1Q8NEL9 900 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 TMEM245Q9H330 911 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 RANBP6O60518 1105 aaKnown RBP9.53□□□□□ -0.88
LIG3-202ENST00000378526 NUGGCQ68CJ6 796 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 UBE2Q1Q7Z7E8 422 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 IL1RAPL1Q9NZN1 696 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 SUCLA2Q9P2R7 463 aaPredicted RBP9.53□□□□□ -0.88
LIG3-202ENST00000378526 ABCC11Q96J66 1382 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 GNA14O95837 355 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 INHBAP08476 426 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 MDM2Q00987 491 aaPredicted RBP9.53□□□□□ -0.88
LIG3-202ENST00000378526 GABPAQ06546 454 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 NAP1L4Q99733 375 aaKnown RBP9.53□□□□□ -0.88
LIG3-202ENST00000378526 OLFM1Q99784 485 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 KAT14Q9H8E8 782 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 LAMC2Q13753 1193 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 KHDRBS2Q5VWX1 349 aaKnown RBP9.53□□□□□ -0.88
LIG3-202ENST00000378526 CCDC103Q8IW40 242 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 ZNF277Q9NRM2 450 aaPredicted RBP9.53□□□□□ -0.88
LIG3-202ENST00000378526 DONSONQ9NYP3 566 aa9.53□□□□□ -0.88
LIG3-202ENST00000378526 TPD52L2O43399 206 aaKnown RBP9.52□□□□□ -0.88
LIG3-202ENST00000378526 NR1D1P20393 614 aa9.52□□□□□ -0.88
LIG3-202ENST00000378526 LONRF2Q1L5Z9 754 aa9.52□□□□□ -0.88
LIG3-202ENST00000378526 TMEM259Q4ZIN3 620 aa9.52□□□□□ -0.88
LIG3-202ENST00000378526 CAVIN4Q5BKX8 364 aa9.52□□□□□ -0.88
LIG3-202ENST00000378526 PLD3Q8IV08 490 aa9.52□□□□□ -0.88
LIG3-202ENST00000378526 EHD2Q9NZN4 543 aa9.52□□□□□ -0.88
LIG3-202ENST00000378526 PTPRCP08575 1304 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 IGHMBP2P38935 993 aaKnown RBP9.52□□□□□ -0.89
LIG3-202ENST00000378526 ST5P78524 1137 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 KLHL12Q53G59 568 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 DTHD1Q6ZMT9 781 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 PKD2L2Q9NZM6 624 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 ORC4O43929 436 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 RBM5P52756 815 aaKnown RBP eCLIP9.52□□□□□ -0.89
LIG3-202ENST00000378526 RINLQ6ZS11 566 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 TNIP2Q8NFZ5 429 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 ZBTB9Q96C00 473 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 HDAC11Q96DB2 347 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 SCYL1Q96KG9 808 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 BRIP1Q9BX63 1249 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 C16orf96A6NNT2 1141 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 XPO1O14980 1071 aaKnown RBP9.52□□□□□ -0.89
LIG3-202ENST00000378526 SNUPNO95149 360 aaKnown RBP9.52□□□□□ -0.89
LIG3-202ENST00000378526 HP1BP3Q5SSJ5 553 aaPredicted RBP9.52□□□□□ -0.89
LIG3-202ENST00000378526 PATL1Q86TB9 770 aaKnown RBP9.52□□□□□ -0.89
LIG3-202ENST00000378526 HIC2Q96JB3 615 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 NLRP4Q96MN2 994 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 C6orf50Q9HD87 102 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 RNF14Q9UBS8 474 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 TRIM17Q9Y577 477 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 MTHFSP49914 203 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 BFSP1Q12934 665 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 DEPDC1Q5TB30 811 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 BZW1Q7L1Q6 419 aaKnown RBP9.52□□□□□ -0.89
LIG3-202ENST00000378526 ASZ1Q8WWH4 475 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 MTRQ99707 1265 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 COG4Q9H9E3 785 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 MID2Q9UJV3 735 aa9.52□□□□□ -0.89
LIG3-202ENST00000378526 PRG3Q9Y2Y8 225 aaPredicted RBP9.52□□□□□ -0.89
LIG3-202ENST00000378526 ZBTB43O43298 467 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 CDC25BP30305 580 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 AP1S2P56377 157 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 PDCLQ13371 301 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 KPNB1Q14974 876 aaKnown RBP9.51□□□□□ -0.89
LIG3-202ENST00000378526 PRPF38AQ8NAV1 312 aaKnown RBP9.51□□□□□ -0.89
LIG3-202ENST00000378526 KIF17Q9P2E2 1029 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 FYCO1Q9BQS8 1478 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 PDE6CP51160 858 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 PLCD1P51178 756 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 DCTN2Q13561 401 aaKnown RBP9.51□□□□□ -0.89
LIG3-202ENST00000378526 NRDE2Q9H7Z3 1164 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 C6orf203Q9P0P8 240 aaPredicted RBP9.51□□□□□ -0.89
LIG3-202ENST00000378526 CTNND2Q9UQB3 1225 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 PPP2R1AP30153 589 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 TTC22Q5TAA0 569 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 PARD3BQ8TEW8 1205 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 MLPHQ9BV36 600 aaPredicted RBP9.51□□□□□ -0.89
LIG3-202ENST00000378526 ZNF215Q9UL58 517 aaPredicted RBP9.51□□□□□ -0.89
LIG3-202ENST00000378526 ENO4A6NNW6 628 aa9.51□□□□□ -0.89
LIG3-202ENST00000378526 ADCY8P40145 1251 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms