RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 CKAP2LQ8IYA6 745 aa8.9□□□□□ -0.99
USP48-203ENST00000374732 STK39Q9UEW8 545 aa8.9□□□□□ -0.99
USP48-203ENST00000374732 NALCNQ8IZF0 1738 aa8.9□□□□□ -0.99
USP48-203ENST00000374732 ANKRD26Q9UPS8 1709 aa8.9□□□□□ -0.99
USP48-203ENST00000374732 YTHDC2Q9H6S0 1430 aaKnown RBP8.9□□□□□ -0.99
USP48-203ENST00000374732 ATAD2Q6PL18 1390 aa8.9□□□□□ -0.99
USP48-203ENST00000374732 SYNDIG1LA6NDD5 238 aa8.89□□□□□ -0.99
USP48-203ENST00000374732 CEP104O60308 925 aa8.89□□□□□ -0.99
USP48-203ENST00000374732 CAVIN2O95810 425 aa8.89□□□□□ -0.99
USP48-203ENST00000374732 ZSCAN22P10073 491 aaPredicted RBP8.89□□□□□ -0.99
USP48-203ENST00000374732 SLC16A2P36021 539 aa8.89□□□□□ -0.99
USP48-203ENST00000374732 MLLT3P42568 568 aaPredicted RBP8.89□□□□□ -0.99
USP48-203ENST00000374732 CYP4A11Q02928 519 aa8.89□□□□□ -0.99
USP48-203ENST00000374732 MLLT1Q03111 559 aaPredicted RBP8.89□□□□□ -0.99
USP48-203ENST00000374732 WDR44Q5JSH3 913 aa8.89□□□□□ -0.99
USP48-203ENST00000374732 BPHLQ86WA6 291 aaPredicted RBP8.89□□□□□ -0.99
USP48-203ENST00000374732 ERC1Q8IUD2 1116 aa8.89□□□□□ -0.99
USP48-203ENST00000374732 RBM14Q96PK6 669 aaKnown RBP8.89□□□□□ -0.99
USP48-203ENST00000374732 SLC12A5Q9H2X9 1139 aa8.89□□□□□ -0.99
USP48-203ENST00000374732 CEP72Q9P209 647 aa8.89□□□□□ -0.99
USP48-203ENST00000374732 PRRT4C9JH25 899 aa8.89□□□□□ -0.99
USP48-203ENST00000374732 ALOX15P16050 662 aaPredicted RBP8.89□□□□□ -0.99
USP48-203ENST00000374732 VAMP1P23763 118 aa8.89□□□□□ -0.99
USP48-203ENST00000374732 SP140Q13342 867 aa8.89□□□□□ -0.99
USP48-203ENST00000374732 VPS53Q5VIR6 699 aa8.89□□□□□ -0.99
USP48-203ENST00000374732 ARHGEF18Q6ZSZ5 1173 aa8.89□□□□□ -0.99
USP48-203ENST00000374732 ABTB2Q8N961 1025 aa8.89□□□□□ -0.99
USP48-203ENST00000374732 EXOC4Q96A65 974 aa8.89□□□□□ -0.99
USP48-203ENST00000374732 NOSIPQ9Y314 301 aaKnown RBP8.89□□□□□ -0.99
USP48-203ENST00000374732 RGPD3A6NKT7 1758 aaPredicted RBP8.89□□□□□ -0.99
USP48-203ENST00000374732 RGPD4Q7Z3J3 1758 aa8.89□□□□□ -0.99
USP48-203ENST00000374732 H7C1W4 665 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 TMEM127O75204 238 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 HNRNPCP07910 306 aaKnown RBP eCLIP8.88□□□□□ -0.99
USP48-203ENST00000374732 RPL13P26373 211 aaKnown RBP8.88□□□□□ -0.99
USP48-203ENST00000374732 PDE4AP27815 886 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 PLA2G4AP47712 749 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 CDKN1CP49918 316 aaPredicted RBP8.88□□□□□ -0.99
USP48-203ENST00000374732 MRPS35P82673 323 aaKnown RBP8.88□□□□□ -0.99
USP48-203ENST00000374732 SYCP1Q15431 976 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 BBS9Q3SYG4 887 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 SLC10A5Q5PT55 438 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 DSTYKQ6XUX3 929 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 EXOC6Q8TAG9 804 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 TCP11Q8WWU5 503 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 NUDT16Q96DE0 195 aaKnown RBP8.88□□□□□ -0.99
USP48-203ENST00000374732 NACAP1Q9BZK3 213 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 TCF7L2Q9NQB0 619 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 DDX41Q9UJV9 622 aaKnown RBP8.88□□□□□ -0.99
USP48-203ENST00000374732 TIMM22Q9Y584 194 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 M0R2C6 588 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 SCGB1D2O95969 90 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 RAC2P15153 192 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 CRYMQ14894 314 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 TAF7Q15545 349 aaPredicted RBP8.88□□□□□ -0.99
USP48-203ENST00000374732 FAM47EQ6ZV65 393 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 DGKHQ86XP1 1220 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 SLC44A2Q8IWA5 706 aaPredicted RBP8.88□□□□□ -0.99
USP48-203ENST00000374732 TRIML2Q8N7C3 387 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 GOT1L1Q8NHS2 421 aaPredicted RBP8.88□□□□□ -0.99
USP48-203ENST00000374732 EPS8L3Q8TE67 593 aaKnown RBP8.88□□□□□ -0.99
USP48-203ENST00000374732 GLT8D2Q9H1C3 349 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 CROTQ9UKG9 612 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 ABCC11Q96J66 1382 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 KCNJ13O60928 360 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 MBD4O95243 580 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 HSPA8P11142 646 aaKnown RBP8.88□□□□□ -0.99
USP48-203ENST00000374732 SMC1AQ14683 1233 aaKnown RBP8.88□□□□□ -0.99
USP48-203ENST00000374732 INAQ16352 499 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 BRDTQ58F21 947 aaPredicted RBP8.88□□□□□ -0.99
USP48-203ENST00000374732 GBP6Q6ZN66 633 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 ESX1Q8N693 406 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 DNAAF2Q9NVR5 837 aaKnown RBP8.88□□□□□ -0.99
USP48-203ENST00000374732 PA2G4Q9UQ80 394 aaKnown RBP8.88□□□□□ -0.99
USP48-203ENST00000374732 WDR37Q9Y2I8 494 aa8.88□□□□□ -0.99
USP48-203ENST00000374732 TSPAN6O43657 245 aa8.87□□□□□ -0.99
USP48-203ENST00000374732 NMT2O60551 498 aa8.87□□□□□ -0.99
USP48-203ENST00000374732 RLBP1P12271 317 aa8.87□□□□□ -0.99
USP48-203ENST00000374732 ATF3P18847 181 aa8.87□□□□□ -0.99
USP48-203ENST00000374732 NMIQ13287 307 aaPredicted RBP8.87□□□□□ -0.99
USP48-203ENST00000374732 FAM133BQ5BKY9 247 aaKnown RBP8.87□□□□□ -0.99
USP48-203ENST00000374732 TMCO3Q6UWJ1 677 aa8.87□□□□□ -0.99
USP48-203ENST00000374732 CTCFLQ8NI51 663 aaPredicted RBP8.87□□□□□ -0.99
USP48-203ENST00000374732 PPP1R14BQ96C90 147 aa8.87□□□□□ -0.99
USP48-203ENST00000374732 PAPOLBQ9NRJ5 636 aaKnown RBP8.87□□□□□ -0.99
USP48-203ENST00000374732 TOR1BO14657 336 aa8.87□□□□□ -0.99
USP48-203ENST00000374732 OPA1O60313 960 aa8.87□□□□□ -0.99
USP48-203ENST00000374732 ARIH2O95376 493 aa8.87□□□□□ -0.99
USP48-203ENST00000374732 SMAD4Q13485 552 aaKnown RBP8.87□□□□□ -0.99
USP48-203ENST00000374732 PROSER3Q2NL68 480 aa8.87□□□□□ -0.99
USP48-203ENST00000374732 PPP4R3AQ6IN85 833 aa8.87□□□□□ -0.99
USP48-203ENST00000374732 FBXO33Q7Z6M2 555 aa8.87□□□□□ -0.99
USP48-203ENST00000374732 GALNT6Q8NCL4 622 aa8.87□□□□□ -0.99
USP48-203ENST00000374732 MOGAT1Q96PD6 335 aa8.87□□□□□ -0.99
USP48-203ENST00000374732 NAP1L3Q99457 506 aaPredicted RBP8.87□□□□□ -0.99
USP48-203ENST00000374732 NDFIP2Q9NV92 336 aa8.87□□□□□ -0.99
USP48-203ENST00000374732 CCDC39Q9UFE4 941 aa8.87□□□□□ -0.99
USP48-203ENST00000374732 SENP3-EIF4A1A0A087X0R7 540 aa8.86□□□□□ -0.99
USP48-203ENST00000374732 CLASP2O75122 1294 aaKnown RBP8.86□□□□□ -0.99
USP48-203ENST00000374732 PARP1P09874 1014 aaKnown RBP8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms