RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 FEZ1Q99689 392 aa16.41■□□□□ 0.22
HMGA1-203ENST00000374116 MTA3Q9BTC8 594 aa16.41■□□□□ 0.22
HMGA1-203ENST00000374116 CLSTN2Q9H4D0 955 aa16.41■□□□□ 0.22
HMGA1-203ENST00000374116 CNNM2Q9H8M5 875 aa16.41■□□□□ 0.22
HMGA1-203ENST00000374116 PTMAP06454 111 aaKnown RBP16.4■□□□□ 0.22
HMGA1-203ENST00000374116 RBM43Q6ZSC3 357 aaKnown RBP16.4■□□□□ 0.22
HMGA1-203ENST00000374116 NEDD1Q8NHV4 660 aa16.4■□□□□ 0.22
HMGA1-203ENST00000374116 BICD2Q8TD16 824 aa16.4■□□□□ 0.22
HMGA1-203ENST00000374116 ESR2Q92731 530 aa16.4■□□□□ 0.22
HMGA1-203ENST00000374116 LY9Q9HBG7 655 aa16.4■□□□□ 0.22
HMGA1-203ENST00000374116 CLIP2Q9UDT6 1046 aa16.4■□□□□ 0.22
HMGA1-203ENST00000374116 STX8Q9UNK0 236 aa16.4■□□□□ 0.22
HMGA1-203ENST00000374116 MTMR7Q9Y216 660 aa16.4■□□□□ 0.22
HMGA1-203ENST00000374116 GREB1LQ9C091 1923 aaPredicted RBP16.4■□□□□ 0.22
HMGA1-203ENST00000374116 HMGCS2P54868 508 aa16.4■□□□□ 0.22
HMGA1-203ENST00000374116 ZNF280CQ8ND82 737 aa16.4■□□□□ 0.22
HMGA1-203ENST00000374116 BBXQ8WY36 941 aaPredicted RBP16.4■□□□□ 0.22
HMGA1-203ENST00000374116 CCDC102AQ96A19 550 aa16.4■□□□□ 0.22
HMGA1-203ENST00000374116 HHIPL1Q96JK4 782 aa16.4■□□□□ 0.22
HMGA1-203ENST00000374116 KRT23Q9C075 422 aa16.4■□□□□ 0.22
HMGA1-203ENST00000374116 SENP2Q9HC62 589 aa16.4■□□□□ 0.22
HMGA1-203ENST00000374116 IGKV6D-41A0A0C4DH26 115 aa16.39■□□□□ 0.21
HMGA1-203ENST00000374116 CPLX1O14810 134 aa16.39■□□□□ 0.21
HMGA1-203ENST00000374116 CBX1P83916 185 aa16.39■□□□□ 0.21
HMGA1-203ENST00000374116 KIF23Q02241 960 aaPredicted RBP16.39■□□□□ 0.21
HMGA1-203ENST00000374116 PPIL2Q13356 520 aa16.39■□□□□ 0.21
HMGA1-203ENST00000374116 NID2Q14112 1375 aa16.39■□□□□ 0.21
HMGA1-203ENST00000374116 SYCP1Q15431 976 aa16.39■□□□□ 0.21
HMGA1-203ENST00000374116 KIAA1755Q5JYT7 1200 aa16.39■□□□□ 0.21
HMGA1-203ENST00000374116 APOA5Q6Q788 366 aa16.39■□□□□ 0.21
HMGA1-203ENST00000374116 RASGRP2Q7LDG7 609 aa16.39■□□□□ 0.21
HMGA1-203ENST00000374116 SPICE1Q8N0Z3 855 aa16.39■□□□□ 0.21
HMGA1-203ENST00000374116 LRRC47Q8N1G4 583 aaKnown RBP16.39■□□□□ 0.21
HMGA1-203ENST00000374116 MS4A4AQ96JQ5 239 aa16.39■□□□□ 0.21
HMGA1-203ENST00000374116 MTMR4Q9NYA4 1195 aa16.39■□□□□ 0.21
HMGA1-203ENST00000374116 PTPRFP10586 1907 aa16.39■□□□□ 0.21
HMGA1-203ENST00000374116 MYH4Q9Y623 1939 aa16.39■□□□□ 0.21
HMGA1-203ENST00000374116 FOSBP53539 338 aa16.38■□□□□ 0.21
HMGA1-203ENST00000374116 CAMK4Q16566 473 aa16.38■□□□□ 0.21
HMGA1-203ENST00000374116 DNAJC5GQ8N7S2 189 aa16.38■□□□□ 0.21
HMGA1-203ENST00000374116 KANSL2Q9H9L4 492 aa16.38■□□□□ 0.21
HMGA1-203ENST00000374116 USP25Q9UHP3 1055 aa16.38■□□□□ 0.21
HMGA1-203ENST00000374116 UNCXA6NJT0 531 aa16.38■□□□□ 0.21
HMGA1-203ENST00000374116 CTIFO43310 598 aaKnown RBP16.38■□□□□ 0.21
HMGA1-203ENST00000374116 NR1I2O75469 434 aa16.38■□□□□ 0.21
HMGA1-203ENST00000374116 TYRO3Q06418 890 aa16.38■□□□□ 0.21
HMGA1-203ENST00000374116 GABPB1Q06547 395 aaPredicted RBP16.38■□□□□ 0.21
HMGA1-203ENST00000374116 GADL1Q6ZQY3 521 aa16.38■□□□□ 0.21
HMGA1-203ENST00000374116 PDCL2Q8N4E4 241 aa16.38■□□□□ 0.21
HMGA1-203ENST00000374116 C8orf76Q96K31 380 aa16.38■□□□□ 0.21
HMGA1-203ENST00000374116 ARID3AQ99856 593 aa16.38■□□□□ 0.21
HMGA1-203ENST00000374116 PTPN18Q99952 460 aa16.38■□□□□ 0.21
HMGA1-203ENST00000374116 FAM217BQ9NTX9 383 aaPredicted RBP16.38■□□□□ 0.21
HMGA1-203ENST00000374116 ORC3Q9UBD5 711 aaPredicted RBP16.38■□□□□ 0.21
HMGA1-203ENST00000374116 USP17L10C9JJH3 530 aa16.37■□□□□ 0.21
HMGA1-203ENST00000374116 ADCY5O95622 1261 aa16.37■□□□□ 0.21
HMGA1-203ENST00000374116 ZBTB48P10074 688 aaPredicted RBP16.37■□□□□ 0.21
HMGA1-203ENST00000374116 PCP11498 1178 aaKnown RBP16.37■□□□□ 0.21
HMGA1-203ENST00000374116 BACE1P56817 501 aa16.37■□□□□ 0.21
HMGA1-203ENST00000374116 NTRK3Q16288 839 aa16.37■□□□□ 0.21
HMGA1-203ENST00000374116 DNTTIP2Q5QJE6 756 aaKnown RBP16.37■□□□□ 0.21
HMGA1-203ENST00000374116 FBXO18Q8NFZ0 1043 aa16.37■□□□□ 0.21
HMGA1-203ENST00000374116 FAM200AQ8TCP9 573 aa16.37■□□□□ 0.21
HMGA1-203ENST00000374116 BRI3BPQ8WY22 251 aa16.37■□□□□ 0.21
HMGA1-203ENST00000374116 AS3MTQ9HBK9 375 aa16.37■□□□□ 0.21
HMGA1-203ENST00000374116 TNKSO95271 1327 aa16.36■□□□□ 0.21
HMGA1-203ENST00000374116 CCL15-CCL14A0A0B4J2E2 113 aa16.36■□□□□ 0.21
HMGA1-203ENST00000374116 CDKL5O76039 1030 aa16.36■□□□□ 0.21
HMGA1-203ENST00000374116 TTLL1O95922 423 aa16.36■□□□□ 0.21
HMGA1-203ENST00000374116 GUCY1B3Q02153 619 aa16.36■□□□□ 0.21
HMGA1-203ENST00000374116 CCL15Q16663 113 aa16.36■□□□□ 0.21
HMGA1-203ENST00000374116 TMEM67Q5HYA8 995 aa16.36■□□□□ 0.21
HMGA1-203ENST00000374116 TREML2Q5T2D2 321 aa16.36■□□□□ 0.21
HMGA1-203ENST00000374116 RCSD1Q6JBY9 416 aa16.36■□□□□ 0.21
HMGA1-203ENST00000374116 ENAHQ8N8S7 591 aaPredicted RBP16.36■□□□□ 0.21
HMGA1-203ENST00000374116 USP28Q96RU2 1077 aa16.36■□□□□ 0.21
HMGA1-203ENST00000374116 ZSCAN10Q96SZ4 725 aaPredicted RBP16.36■□□□□ 0.21
HMGA1-203ENST00000374116 WDR18Q9BV38 432 aa16.36■□□□□ 0.21
HMGA1-203ENST00000374116 EMILIN3Q9NT22 766 aa16.36■□□□□ 0.21
HMGA1-203ENST00000374116 TMEM51Q9NW97 253 aa16.36■□□□□ 0.21
HMGA1-203ENST00000374116 TAOK2Q9UL54 1235 aa16.36■□□□□ 0.21
HMGA1-203ENST00000374116 KCNH4Q9UQ05 1017 aa16.36■□□□□ 0.21
HMGA1-203ENST00000374116 MRVI1Q9Y6F6 885 aa16.36■□□□□ 0.21
HMGA1-203ENST00000374116 PLIN4Q96Q06 1357 aa16.36■□□□□ 0.21
HMGA1-203ENST00000374116 CTAGE5O15320 804 aa16.35■□□□□ 0.21
HMGA1-203ENST00000374116 PPFIA3O75145 1194 aa16.35■□□□□ 0.21
HMGA1-203ENST00000374116 TPM3P06753 285 aa16.35■□□□□ 0.21
HMGA1-203ENST00000374116 CDC27P30260 824 aa16.35■□□□□ 0.21
HMGA1-203ENST00000374116 METAP2P50579 478 aaKnown RBP eCLIP16.35■□□□□ 0.213e-20■■■□□ 14.9
HMGA1-203ENST00000374116 GTF2A2P52657 109 aa16.35■□□□□ 0.21
HMGA1-203ENST00000374116 CEBPZQ03701 1054 aaKnown RBP16.35■□□□□ 0.21
HMGA1-203ENST00000374116 NOGQ13253 232 aa16.35■□□□□ 0.21
HMGA1-203ENST00000374116 SNAPC2Q13487 334 aa16.35■□□□□ 0.21
HMGA1-203ENST00000374116 MOGSQ13724 837 aa16.35■□□□□ 0.21
HMGA1-203ENST00000374116 BRAPQ7Z569 592 aa16.35■□□□□ 0.21
HMGA1-203ENST00000374116 NUP88Q99567 741 aaPredicted RBP16.35■□□□□ 0.21
HMGA1-203ENST00000374116 UBAC1Q9BSL1 405 aa16.35■□□□□ 0.21
HMGA1-203ENST00000374116 ARHGEF10LQ9HCE6 1279 aa16.35■□□□□ 0.21
HMGA1-203ENST00000374116 RTEL1Q9NZ71 1219 aa16.35■□□□□ 0.21
HMGA1-203ENST00000374116 A0A0G2JLL6 359 aaPredicted RBP16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms