RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 RWDD1Q9H446 243 aaPredicted RBP4.4□□□□□ -1.7
MCF2-202ENST00000370573 C11orf16Q9NQ32 467 aa4.4□□□□□ -1.7
MCF2-202ENST00000370573 C9orf78Q9NZ63 289 aaPredicted RBP4.4□□□□□ -1.7
MCF2-202ENST00000370573 SRP68Q9UHB9 627 aaKnown RBP4.4□□□□□ -1.7
MCF2-202ENST00000370573 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.4□□□□□ -1.7
MCF2-202ENST00000370573 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.4□□□□□ -1.7
MCF2-202ENST00000370573 NUP98P52948 1817 aa4.4□□□□□ -1.71
MCF2-202ENST00000370573 A0A087WZG4 1122 aa4.4□□□□□ -1.71
MCF2-202ENST00000370573 PNMA6EA0A0J9YXQ4 647 aa4.4□□□□□ -1.71
MCF2-202ENST00000370573 TLDC2A0PJX2 215 aa4.4□□□□□ -1.71
MCF2-202ENST00000370573 GHRHP01286 108 aa4.4□□□□□ -1.71
MCF2-202ENST00000370573 GPTP24298 496 aa4.4□□□□□ -1.71
MCF2-202ENST00000370573 DNAJA1P31689 397 aaKnown RBP4.4□□□□□ -1.71
MCF2-202ENST00000370573 NRLP54845 237 aa4.4□□□□□ -1.71
MCF2-202ENST00000370573 RACK1P63244 317 aaKnown RBP4.4□□□□□ -1.71
MCF2-202ENST00000370573 PLCB3Q01970 1234 aa4.4□□□□□ -1.71
MCF2-202ENST00000370573 EZH2Q15910 746 aaKnown RBP4.4□□□□□ -1.71
MCF2-202ENST00000370573 USPL1Q5W0Q7 1092 aa4.4□□□□□ -1.71
MCF2-202ENST00000370573 MSL1Q68DK7 614 aa4.4□□□□□ -1.71
MCF2-202ENST00000370573 NLRP10Q86W26 655 aa4.4□□□□□ -1.71
MCF2-202ENST00000370573 RPAP2Q8IXW5 612 aaPredicted RBP4.4□□□□□ -1.71
MCF2-202ENST00000370573 DHX37Q8IY37 1157 aaKnown RBP4.4□□□□□ -1.71
MCF2-202ENST00000370573 CCDC191Q8NCU4 936 aa4.4□□□□□ -1.71
MCF2-202ENST00000370573 CWC25Q9NXE8 425 aaPredicted RBP4.4□□□□□ -1.71
MCF2-202ENST00000370573 TMEM63CQ9P1W3 806 aa4.4□□□□□ -1.71
MCF2-202ENST00000370573 NARFQ9UHQ1 456 aa4.4□□□□□ -1.71
MCF2-202ENST00000370573 UBN2Q6ZU65 1347 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 NDUFB5O43674 189 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 CTSHP09668 335 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 ATP2B1P20020 1258 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 CDC25BP30305 580 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 FOXO4P98177 505 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 ZNF394Q53GI3 561 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 TTC39BQ5VTQ0 682 aaPredicted RBP4.39□□□□□ -1.71
MCF2-202ENST00000370573 SUSD4Q5VX71 490 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 CENPQQ7L2Z9 268 aaPredicted RBP4.39□□□□□ -1.71
MCF2-202ENST00000370573 UBE3BQ7Z3V4 1068 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 PPP1R42Q7Z4L9 355 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 DEFB132Q7Z7B7 95 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 FAM129BQ96TA1 746 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 GMLQ99445 158 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 CCSER2Q9H7U1 834 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 FAM13BQ9NYF5 915 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 KANSL3Q9P2N6 904 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 VTI1BQ9UEU0 232 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 FNDC3AQ9Y2H6 1198 aaKnown RBP4.39□□□□□ -1.71
MCF2-202ENST00000370573 PCDHGB7Q9Y5F8 929 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 AFDNP55196 1824 aaKnown RBP4.39□□□□□ -1.71
MCF2-202ENST00000370573 UBR3Q6ZT12 1888 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 PCCAP05165 728 aaPredicted RBP4.39□□□□□ -1.71
MCF2-202ENST00000370573 SELPP16109 830 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 ZNF76P36508 570 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 GATA4P43694 442 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 HSP90AB3PQ58FF7 597 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 EGFLAMQ63HQ2 1017 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 CLEC4GQ6UXB4 293 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 WFDC8Q8IUA0 241 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 SMC5Q8IY18 1101 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 SSH3Q8TE77 659 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 FAM89AQ96GI7 184 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 BICC1Q9H694 974 aaKnown RBP4.39□□□□□ -1.71
MCF2-202ENST00000370573 DCTPP1Q9H773 170 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 ELP3Q9H9T3 547 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 METTL5Q9NRN9 209 aaKnown RBP4.39□□□□□ -1.71
MCF2-202ENST00000370573 TRIM33Q9UPN9 1127 aa4.39□□□□□ -1.71
MCF2-202ENST00000370573 USP42Q9H9J4 1324 aaKnown RBP4.38□□□□□ -1.71
MCF2-202ENST00000370573 RFC4P35249 363 aa4.38□□□□□ -1.71
MCF2-202ENST00000370573 ATP11AP98196 1134 aa4.38□□□□□ -1.71
MCF2-202ENST00000370573 PSMD2Q13200 908 aa4.38□□□□□ -1.71
MCF2-202ENST00000370573 MTX1Q13505 466 aa4.38□□□□□ -1.71
MCF2-202ENST00000370573 TBC1D9BQ66K14 1250 aa4.38□□□□□ -1.71
MCF2-202ENST00000370573 ZNF438Q7Z4V0 828 aa4.38□□□□□ -1.71
MCF2-202ENST00000370573 COL23A1Q86Y22 540 aaPredicted RBP4.38□□□□□ -1.71
MCF2-202ENST00000370573 IL22RA1Q8N6P7 574 aa4.38□□□□□ -1.71
MCF2-202ENST00000370573 ZBTB38Q8NAP3 1195 aaPredicted RBP4.38□□□□□ -1.71
MCF2-202ENST00000370573 ABI2Q9NYB9 513 aaPredicted RBP4.38□□□□□ -1.71
MCF2-202ENST00000370573 FRRS1LQ9P0K9 344 aa4.38□□□□□ -1.71
MCF2-202ENST00000370573 CNTN3Q9P232 1028 aa4.38□□□□□ -1.71
MCF2-202ENST00000370573 NIP7Q9Y221 180 aaKnown RBP eCLIP4.38□□□□□ -1.71
MCF2-202ENST00000370573 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.38□□□□□ -1.71
MCF2-202ENST00000370573 ANKRD36CQ5JPF3 1778 aa4.38□□□□□ -1.71
MCF2-202ENST00000370573 BCORQ6W2J9 1755 aa4.38□□□□□ -1.71
MCF2-202ENST00000370573 FAM177BA6PVY3 158 aa4.38□□□□□ -1.71
MCF2-202ENST00000370573 RFX5P48382 616 aaPredicted RBP4.38□□□□□ -1.71
MCF2-202ENST00000370573 RAC1P63000 192 aa4.38□□□□□ -1.71
MCF2-202ENST00000370573 RBL2Q08999 1139 aa4.38□□□□□ -1.71
MCF2-202ENST00000370573 RABL6Q3YEC7 729 aaPredicted RBP4.38□□□□□ -1.71
MCF2-202ENST00000370573 TXNDC11Q6PKC3 985 aa4.38□□□□□ -1.71
MCF2-202ENST00000370573 NCAPG2Q86XI2 1143 aa4.38□□□□□ -1.71
MCF2-202ENST00000370573 OR13H1Q8NG92 308 aa4.38□□□□□ -1.71
MCF2-202ENST00000370573 LACRTQ9GZZ8 138 aa4.38□□□□□ -1.71
MCF2-202ENST00000370573 TRMT112Q9UI30 125 aaKnown RBP4.38□□□□□ -1.71
MCF2-202ENST00000370573 RGPD3A6NKT7 1758 aaPredicted RBP4.37□□□□□ -1.71
MCF2-202ENST00000370573 RGPD4Q7Z3J3 1758 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 SRGAP3O43295 1099 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 NTSR2O95665 410 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 PDGFAP04085 211 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 GYS1P13807 737 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 ELNP15502 786 aa4.37□□□□□ -1.71
MCF2-202ENST00000370573 NUCB1Q02818 461 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms