RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 TAF3Q5VWG9 929 aa16.12■□□□□ 0.17
CD48-201ENST00000368045 CC2D1AQ6P1N0 951 aaPredicted RBP16.12■□□□□ 0.17
CD48-201ENST00000368045 TPTE2Q6XPS3 522 aa16.12■□□□□ 0.17
CD48-201ENST00000368045 DTHD1Q6ZMT9 781 aa16.12■□□□□ 0.17
CD48-201ENST00000368045 BICDL1Q6ZP65 573 aa16.12■□□□□ 0.17
CD48-201ENST00000368045 SRGAP1Q7Z6B7 1085 aa16.12■□□□□ 0.17
CD48-201ENST00000368045 CERS3Q8IU89 383 aa16.12■□□□□ 0.17
CD48-201ENST00000368045 ADSSL1Q8N142 457 aa16.12■□□□□ 0.17
CD48-201ENST00000368045 NOC3LQ8WTT2 800 aaKnown RBP16.12■□□□□ 0.17
CD48-201ENST00000368045 CCSER1Q9C0I3 900 aa16.12■□□□□ 0.17
CD48-201ENST00000368045 ABHD10Q9NUJ1 306 aa16.12■□□□□ 0.17
CD48-201ENST00000368045 CCT6AP40227 531 aaKnown RBP16.11■□□□□ 0.17
CD48-201ENST00000368045 EVX2Q03828 476 aa16.11■□□□□ 0.17
CD48-201ENST00000368045 STIM1Q13586 685 aa16.11■□□□□ 0.17
CD48-201ENST00000368045 BRD3Q15059 726 aa16.11■□□□□ 0.17
CD48-201ENST00000368045 STAMQ92783 540 aa16.11■□□□□ 0.17
CD48-201ENST00000368045 ARFGAP3Q9NP61 516 aa16.11■□□□□ 0.17
CD48-201ENST00000368045 LZTFL1Q9NQ48 299 aa16.11■□□□□ 0.17
CD48-201ENST00000368045 FAM205AQ6ZU69 1335 aa16.11■□□□□ 0.17
CD48-201ENST00000368045 A0A1W2PQC6 194 aa16.1■□□□□ 0.17
CD48-201ENST00000368045 CTAGE9A4FU28 777 aa16.1■□□□□ 0.17
CD48-201ENST00000368045 LDHBP07195 334 aaKnown RBP16.1■□□□□ 0.17
CD48-201ENST00000368045 EEF1GP26641 437 aaKnown RBP16.1■□□□□ 0.17
CD48-201ENST00000368045 USP5P45974 858 aa16.1■□□□□ 0.17
CD48-201ENST00000368045 CHMP4BP1P59074 171 aa16.1■□□□□ 0.17
CD48-201ENST00000368045 PPP4CP60510 307 aa16.1■□□□□ 0.17
CD48-201ENST00000368045 UBXN6Q9BZV1 441 aa16.1■□□□□ 0.17
CD48-201ENST00000368045 THAP9Q9H5L6 903 aa16.1■□□□□ 0.17
CD48-201ENST00000368045 CCDC151A5D8V7 595 aa16.1■□□□□ 0.17
CD48-201ENST00000368045 ZPR1O75312 459 aa16.1■□□□□ 0.17
CD48-201ENST00000368045 BAG3O95817 575 aa16.1■□□□□ 0.17
CD48-201ENST00000368045 USP17L8P0C7I0 530 aa16.1■□□□□ 0.17
CD48-201ENST00000368045 VEGFAP15692 232 aaPredicted RBP16.1■□□□□ 0.17
CD48-201ENST00000368045 AK8Q96MA6 479 aa16.1■□□□□ 0.17
CD48-201ENST00000368045 PARD6BQ9BYG5 372 aa16.1■□□□□ 0.17
CD48-201ENST00000368045 MKNK2Q9HBH9 465 aa16.1■□□□□ 0.17
CD48-201ENST00000368045 ZNF287Q9HBT7 754 aa16.1■□□□□ 0.17
CD48-201ENST00000368045 IL17RBQ9NRM6 502 aa16.1■□□□□ 0.17
CD48-201ENST00000368045 BARHL2Q9NY43 387 aa16.1■□□□□ 0.17
CD48-201ENST00000368045 TAB2Q9NYJ8 693 aa16.1■□□□□ 0.17
CD48-201ENST00000368045 MAD2L2Q9UI95 211 aa16.1■□□□□ 0.17
CD48-201ENST00000368045 LEMD3Q9Y2U8 911 aa16.1■□□□□ 0.17
CD48-201ENST00000368045 CASZ1Q86V15 1759 aa16.09■□□□□ 0.17
CD48-201ENST00000368045 RHOBTB3O94955 611 aa16.09■□□□□ 0.17
CD48-201ENST00000368045 TBC1D8O95759 1140 aa16.09■□□□□ 0.17
CD48-201ENST00000368045 LDHCP07864 332 aa16.09■□□□□ 0.17
CD48-201ENST00000368045 PPP1R2P41236 205 aa16.09■□□□□ 0.17
CD48-201ENST00000368045 PRCPP42785 496 aa16.09■□□□□ 0.17
CD48-201ENST00000368045 NUP88Q99567 741 aaPredicted RBP16.09■□□□□ 0.17
CD48-201ENST00000368045 VPS16Q9H269 839 aa16.09■□□□□ 0.17
CD48-201ENST00000368045 PCDHA6Q9UN73 950 aa16.09■□□□□ 0.17
CD48-201ENST00000368045 PCDHA8Q9Y5H6 950 aa16.09■□□□□ 0.17
CD48-201ENST00000368045 MYH13Q9UKX3 1938 aa16.09■□□□□ 0.17
CD48-201ENST00000368045 LGALS16A8MUM7 142 aa16.08■□□□□ 0.17
CD48-201ENST00000368045 STXBP3O00186 592 aa16.08■□□□□ 0.17
CD48-201ENST00000368045 PSMA7O14818 248 aa16.08■□□□□ 0.17
CD48-201ENST00000368045 TUBBP07437 444 aa16.08■□□□□ 0.17
CD48-201ENST00000368045 PARP1P09874 1014 aaKnown RBP16.08■□□□□ 0.17
CD48-201ENST00000368045 TM4SF1P30408 202 aa16.08■□□□□ 0.17
CD48-201ENST00000368045 UBA7P41226 1012 aa16.08■□□□□ 0.17
CD48-201ENST00000368045 ERVK-24P63145 666 aa16.08■□□□□ 0.17
CD48-201ENST00000368045 ORC2Q13416 577 aaPredicted RBP16.08■□□□□ 0.17
CD48-201ENST00000368045 WHAMMP3Q1A5X7 153 aa16.08■□□□□ 0.17
CD48-201ENST00000368045 ZNF569Q5MCW4 686 aa16.08■□□□□ 0.17
CD48-201ENST00000368045 C15orf52Q6ZUT6 534 aaKnown RBP16.08■□□□□ 0.17
CD48-201ENST00000368045 HNRNPLLQ8WVV9 542 aaKnown RBP16.08■□□□□ 0.17
CD48-201ENST00000368045 GPKOWQ92917 476 aaPredicted RBP eCLIP16.08■□□□□ 0.17
CD48-201ENST00000368045 NAPGQ99747 312 aaPredicted RBP16.08■□□□□ 0.17
CD48-201ENST00000368045 KBTBD4Q9NVX7 518 aa16.08■□□□□ 0.17
CD48-201ENST00000368045 GDAQ9Y2T3 454 aa16.08■□□□□ 0.17
CD48-201ENST00000368045 PALM3A6NDB9 673 aaPredicted RBP16.08■□□□□ 0.16
CD48-201ENST00000368045 ADAMTS3O15072 1205 aa16.08■□□□□ 0.16
CD48-201ENST00000368045 KRT9P35527 623 aa16.08■□□□□ 0.16
CD48-201ENST00000368045 KIF4BQ2VIQ3 1234 aa16.08■□□□□ 0.16
CD48-201ENST00000368045 NAALADL2Q58DX5 795 aa16.08■□□□□ 0.16
CD48-201ENST00000368045 KRT25Q7Z3Z0 450 aa16.08■□□□□ 0.16
CD48-201ENST00000368045 ZNF444Q8N0Y2 327 aaPredicted RBP16.08■□□□□ 0.16
CD48-201ENST00000368045 STAG2Q8N3U4 1231 aa16.08■□□□□ 0.16
CD48-201ENST00000368045 CCDC47Q96A33 483 aaKnown RBP16.08■□□□□ 0.16
CD48-201ENST00000368045 DHTKD1Q96HY7 919 aaPredicted RBP16.08■□□□□ 0.16
CD48-201ENST00000368045 SPZ1Q9BXG8 430 aa16.08■□□□□ 0.16
CD48-201ENST00000368045 TAF1P21675 1872 aa16.07■□□□□ 0.16
CD48-201ENST00000368045 CCDC66A2RUB6 948 aa16.07■□□□□ 0.16
CD48-201ENST00000368045 KLRC4O43908 158 aa16.07■□□□□ 0.16
CD48-201ENST00000368045 TSPY3P0CV98 308 aa16.07■□□□□ 0.16
CD48-201ENST00000368045 TSPY8P0CW00 308 aa16.07■□□□□ 0.16
CD48-201ENST00000368045 SMARCA1P28370 1054 aa16.07■□□□□ 0.16
CD48-201ENST00000368045 PIP4K2BP78356 416 aa16.07■□□□□ 0.16
CD48-201ENST00000368045 UBXN1Q04323 297 aa16.07■□□□□ 0.16
CD48-201ENST00000368045 IRF2BP1Q8IU81 584 aa16.07■□□□□ 0.16
CD48-201ENST00000368045 MSL3Q8N5Y2 521 aaKnown RBP16.07■□□□□ 0.16
CD48-201ENST00000368045 MB21D1Q8N884 522 aa16.07■□□□□ 0.16
CD48-201ENST00000368045 MSANTD4Q8NCY6 345 aa16.07■□□□□ 0.16
CD48-201ENST00000368045 GIMAP8Q8ND71 665 aaPredicted RBP16.07■□□□□ 0.16
CD48-201ENST00000368045 OR8K1Q8NGG5 319 aa16.07■□□□□ 0.16
CD48-201ENST00000368045 RASSF8Q8NHQ8 419 aa16.07■□□□□ 0.16
CD48-201ENST00000368045 SH3RF3Q8TEJ3 882 aaPredicted RBP16.07■□□□□ 0.16
CD48-201ENST00000368045 DNAJC7Q99615 494 aa16.07■□□□□ 0.16
CD48-201ENST00000368045 IRX2Q9BZI1 471 aaPredicted RBP16.07■□□□□ 0.16
CD48-201ENST00000368045 MAGEC2Q9UBF1 373 aaPredicted RBP16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms