RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 STAM2O75886 525 aa17.18■□□□□ 0.34
PTPRF-201ENST00000359947 IFNB1P01574 187 aa17.18■□□□□ 0.34
PTPRF-201ENST00000359947 DYNLL1P63167 89 aaKnown RBP17.18■□□□□ 0.34
PTPRF-201ENST00000359947 RYBPQ8N488 228 aaPredicted RBP17.18■□□□□ 0.34
PTPRF-201ENST00000359947 NAPGQ99747 312 aaPredicted RBP17.18■□□□□ 0.34
PTPRF-201ENST00000359947 SAT1P21673 171 aa17.18■□□□□ 0.34
PTPRF-201ENST00000359947 ADD1P35611 737 aaKnown RBP17.18■□□□□ 0.34
PTPRF-201ENST00000359947 KIAA1841Q6NSI8 718 aa17.18■□□□□ 0.34
PTPRF-201ENST00000359947 NRBP2Q9NSY0 501 aa17.18■□□□□ 0.34
PTPRF-201ENST00000359947 ADAMTS12P58397 1594 aa17.18■□□□□ 0.34
PTPRF-201ENST00000359947 PEX26Q7Z412 305 aa17.18■□□□□ 0.34
PTPRF-201ENST00000359947 PRPF31Q8WWY3 499 aaKnown RBP17.18■□□□□ 0.34
PTPRF-201ENST00000359947 EEF2KMTQ96G04 330 aa17.18■□□□□ 0.34
PTPRF-201ENST00000359947 DSCC1Q9BVC3 393 aa17.18■□□□□ 0.34
PTPRF-201ENST00000359947 TRIM14Q14142 442 aa17.18■□□□□ 0.34
PTPRF-201ENST00000359947 SLFN12Q8IYM2 578 aa17.18■□□□□ 0.34
PTPRF-201ENST00000359947 GOLGA6CA6NDK9 693 aa17.17■□□□□ 0.34
PTPRF-201ENST00000359947 GOLGA6BA6NDN3 693 aa17.17■□□□□ 0.34
PTPRF-201ENST00000359947 C21orf2O43822 256 aa17.17■□□□□ 0.34
PTPRF-201ENST00000359947 GOLGA6DP0CG33 693 aa17.17■□□□□ 0.34
PTPRF-201ENST00000359947 PIK3CAP42336 1068 aa17.17■□□□□ 0.34
PTPRF-201ENST00000359947 MAGEA1P43355 309 aa17.17■□□□□ 0.34
PTPRF-201ENST00000359947 PPP2R5BQ15173 497 aa17.17■□□□□ 0.34
PTPRF-201ENST00000359947 CFAP57Q96MR6 1250 aa17.17■□□□□ 0.34
PTPRF-201ENST00000359947 GOLGA6AQ9NYA3 693 aa17.17■□□□□ 0.34
PTPRF-201ENST00000359947 TACC3Q9Y6A5 838 aa17.17■□□□□ 0.34
PTPRF-201ENST00000359947 XRCC6P12956 609 aaKnown RBP eCLIP17.17■□□□□ 0.34
PTPRF-201ENST00000359947 ARMCX5Q6P1M9 558 aa17.17■□□□□ 0.34
PTPRF-201ENST00000359947 INTS8Q75QN2 995 aaKnown RBP17.17■□□□□ 0.34
PTPRF-201ENST00000359947 MICAL1Q8TDZ2 1067 aa17.17■□□□□ 0.34
PTPRF-201ENST00000359947 PGBD1Q96JS3 809 aa17.17■□□□□ 0.34
PTPRF-201ENST00000359947 RABEP2Q9H5N1 569 aa17.17■□□□□ 0.34
PTPRF-201ENST00000359947 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.17■□□□□ 0.348e-7■■■□□ 15.8
PTPRF-201ENST00000359947 PCCAP05165 728 aaPredicted RBP17.17■□□□□ 0.34
PTPRF-201ENST00000359947 PLCB4Q15147 1175 aa17.17■□□□□ 0.34
PTPRF-201ENST00000359947 SLF1Q9BQI6 1058 aa17.17■□□□□ 0.34
PTPRF-201ENST00000359947 NUP58Q9BVL2 599 aa17.17■□□□□ 0.34
PTPRF-201ENST00000359947 SATB1Q01826 763 aa17.17■□□□□ 0.34
PTPRF-201ENST00000359947 MTX1Q13505 466 aa17.17■□□□□ 0.34
PTPRF-201ENST00000359947 ZBTB7AO95365 584 aa17.17■□□□□ 0.34
PTPRF-201ENST00000359947 SLC10A4Q96EP9 437 aa17.17■□□□□ 0.34
PTPRF-201ENST00000359947 FMNL1O95466 1100 aaPredicted RBP17.16■□□□□ 0.34
PTPRF-201ENST00000359947 NLRP12P59046 1061 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 PROSER3Q2NL68 480 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 FAM184BQ9ULE4 1060 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 INO80B-WBP1J3KQ70 363 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 TLR3O15455 904 aaKnown RBP17.16■□□□□ 0.34
PTPRF-201ENST00000359947 COBLO75128 1261 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 DIXDC1Q155Q3 683 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 KAZNQ674X7 775 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 TTC30AQ86WT1 665 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 FANCBQ8NB91 859 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 INO80BQ9C086 356 aaPredicted RBP17.16■□□□□ 0.34
PTPRF-201ENST00000359947 PRAMEF22A3QJZ6 481 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 SNAP25P60880 206 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 PPM1KQ8N3J5 372 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 NLRP7Q8WX94 980 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 SLC39A2Q9NP94 309 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 HESX1Q9UBX0 185 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 FGAP02671 866 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 SLC4A1P02730 911 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 CAPN12Q6ZSI9 719 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 NEK8Q86SG6 692 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 MLKLQ8NB16 471 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 VPS37BQ9H9H4 285 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 C1orf112Q9NSG2 853 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 MARK3P27448 753 aa17.16■□□□□ 0.34
PTPRF-201ENST00000359947 ZFYVE16Q7Z3T8 1539 aa17.15■□□□□ 0.34
PTPRF-201ENST00000359947 ATP5DP30049 168 aa17.15■□□□□ 0.34
PTPRF-201ENST00000359947 PTH1RQ03431 593 aa17.15■□□□□ 0.34
PTPRF-201ENST00000359947 ADAT2Q7Z6V5 191 aaKnown RBP17.15■□□□□ 0.34
PTPRF-201ENST00000359947 SDCCAG8Q86SQ7 713 aaPredicted RBP17.15■□□□□ 0.34
PTPRF-201ENST00000359947 CTAGE3PQ8IX95 158 aa17.15■□□□□ 0.34
PTPRF-201ENST00000359947 MYOCDQ8IZQ8 938 aa17.15■□□□□ 0.34
PTPRF-201ENST00000359947 HSPD1P10809 573 aaKnown RBP17.15■□□□□ 0.34
PTPRF-201ENST00000359947 VPS41P49754 854 aa17.15■□□□□ 0.34
PTPRF-201ENST00000359947 RSPH3Q86UC2 560 aa17.15■□□□□ 0.34
PTPRF-201ENST00000359947 CEP57Q86XR8 500 aa17.15■□□□□ 0.34
PTPRF-201ENST00000359947 EAF2Q96CJ1 260 aaPredicted RBP17.15■□□□□ 0.34
PTPRF-201ENST00000359947 ZNF577Q9BSK1 485 aa17.15■□□□□ 0.34
PTPRF-201ENST00000359947 DYNC1I1O14576 645 aa17.15■□□□□ 0.34
PTPRF-201ENST00000359947 GADD45BO75293 160 aaPredicted RBP17.15■□□□□ 0.34
PTPRF-201ENST00000359947 ME3Q16798 604 aa17.15■□□□□ 0.34
PTPRF-201ENST00000359947 LACTBP83111 547 aaPredicted RBP17.15■□□□□ 0.34
PTPRF-201ENST00000359947 LRCH2Q5VUJ6 765 aa17.15■□□□□ 0.34
PTPRF-201ENST00000359947 CACYBPQ9HB71 228 aaKnown RBP17.15■□□□□ 0.34
PTPRF-201ENST00000359947 EVCP57679 992 aa17.15■□□□□ 0.34
PTPRF-201ENST00000359947 OSTNP61366 133 aa17.15■□□□□ 0.34
PTPRF-201ENST00000359947 IWS1Q96ST2 819 aa17.15■□□□□ 0.34
PTPRF-201ENST00000359947 MICALL1Q8N3F8 863 aa17.14■□□□□ 0.33
PTPRF-201ENST00000359947 MAGED2Q9UNF1 606 aaPredicted RBP17.14■□□□□ 0.33
PTPRF-201ENST00000359947 KRT15P19012 456 aa17.14■□□□□ 0.33
PTPRF-201ENST00000359947 KCNG1Q9UIX4 513 aa17.14■□□□□ 0.33
PTPRF-201ENST00000359947 SCG2P13521 617 aa17.14■□□□□ 0.33
PTPRF-201ENST00000359947 FYB2Q5VWT5 728 aa17.14■□□□□ 0.33
PTPRF-201ENST00000359947 USP44Q9H0E7 712 aa17.14■□□□□ 0.33
PTPRF-201ENST00000359947 PDE8BO95263 885 aa17.14■□□□□ 0.33
PTPRF-201ENST00000359947 ZSCAN20P17040 1043 aaPredicted RBP17.14■□□□□ 0.33
PTPRF-201ENST00000359947 AFAP1L2Q8N4X5 818 aa17.14■□□□□ 0.33
PTPRF-201ENST00000359947 FAM76AQ8TAV0 307 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms