RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 TLR3O15455 904 aaKnown RBP13.54□□□□□ -0.24
RTN3-204ENST00000354497 CT47B1P0C2W7 299 aaPredicted RBP13.54□□□□□ -0.24
RTN3-204ENST00000354497 CYP2D6P10635 497 aa13.54□□□□□ -0.24
RTN3-204ENST00000354497 SLC4A3P48751 1232 aa13.54□□□□□ -0.24
RTN3-204ENST00000354497 ICA1Q05084 483 aa13.54□□□□□ -0.24
RTN3-204ENST00000354497 ZNF792Q3KQV3 632 aa13.54□□□□□ -0.24
RTN3-204ENST00000354497 FRAT1Q92837 279 aaPredicted RBP13.54□□□□□ -0.24
RTN3-204ENST00000354497 CRNKL1Q9BZJ0 848 aaKnown RBP13.54□□□□□ -0.24
RTN3-204ENST00000354497 ANTXR1Q9H6X2 564 aa13.54□□□□□ -0.24
RTN3-204ENST00000354497 PLXNA1Q9UIW2 1896 aa13.54□□□□□ -0.24
RTN3-204ENST00000354497 DBNLQ9UJU6 430 aaKnown RBP13.54□□□□□ -0.24
RTN3-204ENST00000354497 ROBO3Q96MS0 1386 aa13.53□□□□□ -0.24
RTN3-204ENST00000354497 NAV1Q8NEY1 1877 aa13.53□□□□□ -0.24
RTN3-204ENST00000354497 BCAR3O75815 825 aa13.53□□□□□ -0.24
RTN3-204ENST00000354497 C6orf222P0C671 652 aaPredicted RBP13.53□□□□□ -0.24
RTN3-204ENST00000354497 IRX5P78411 483 aaPredicted RBP13.53□□□□□ -0.24
RTN3-204ENST00000354497 RIOX2Q8IUF8 465 aa13.53□□□□□ -0.24
RTN3-204ENST00000354497 DYNLL2Q96FJ2 89 aa13.53□□□□□ -0.24
RTN3-204ENST00000354497 MTIF3Q9H2K0 278 aaKnown RBP13.53□□□□□ -0.24
RTN3-204ENST00000354497 VCPKMTQ9H867 229 aa13.53□□□□□ -0.24
RTN3-204ENST00000354497 FBXO28Q9NVF7 368 aa13.53□□□□□ -0.24
RTN3-204ENST00000354497 TNNQ9UQP3 1299 aa13.53□□□□□ -0.24
RTN3-204ENST00000354497 HCN4Q9Y3Q4 1203 aa13.53□□□□□ -0.24
RTN3-204ENST00000354497 WDR46O15213 610 aaKnown RBP13.52□□□□□ -0.25
RTN3-204ENST00000354497 AKR1B1P15121 316 aa13.52□□□□□ -0.25
RTN3-204ENST00000354497 CYP2C18P33260 490 aa13.52□□□□□ -0.25
RTN3-204ENST00000354497 STAT3P40763 770 aa13.52□□□□□ -0.25
RTN3-204ENST00000354497 RARSP54136 660 aaKnown RBP13.52□□□□□ -0.25
RTN3-204ENST00000354497 TFF2Q03403 129 aa13.52□□□□□ -0.25
RTN3-204ENST00000354497 GABPAQ06546 454 aa13.52□□□□□ -0.25
RTN3-204ENST00000354497 RASIP1Q5U651 963 aa13.52□□□□□ -0.25
RTN3-204ENST00000354497 IFNLR1Q8IU57 520 aaPredicted RBP13.52□□□□□ -0.25
RTN3-204ENST00000354497 KLHDC9Q8NEP7 349 aa13.52□□□□□ -0.25
RTN3-204ENST00000354497 SDR42E1Q8WUS8 393 aa13.52□□□□□ -0.25
RTN3-204ENST00000354497 ARHGAP45Q92619 1136 aa13.52□□□□□ -0.25
RTN3-204ENST00000354497 CLUAP1Q96AJ1 413 aa13.52□□□□□ -0.25
RTN3-204ENST00000354497 RIOK1Q9BRS2 568 aaKnown RBP13.52□□□□□ -0.25
RTN3-204ENST00000354497 SPC25Q9HBM1 224 aa13.52□□□□□ -0.25
RTN3-204ENST00000354497 CXXC1Q9P0U4 656 aaPredicted RBP13.52□□□□□ -0.25
RTN3-204ENST00000354497 DIS3Q9Y2L1 958 aaKnown RBP13.52□□□□□ -0.25
RTN3-204ENST00000354497 YBX2Q9Y2T7 364 aaKnown RBP13.52□□□□□ -0.25
RTN3-204ENST00000354497 TMX2Q9Y320 296 aa13.52□□□□□ -0.25
RTN3-204ENST00000354497 A0A0U1RQG5 324 aaPredicted RBP13.51□□□□□ -0.25
RTN3-204ENST00000354497 FGBP02675 491 aa13.51□□□□□ -0.25
RTN3-204ENST00000354497 ASGR1P07306 291 aa13.51□□□□□ -0.25
RTN3-204ENST00000354497 KCNQ1P51787 676 aa13.51□□□□□ -0.25
RTN3-204ENST00000354497 PPP2R2DQ66LE6 453 aa13.51□□□□□ -0.25
RTN3-204ENST00000354497 OTOP2Q7RTS6 562 aa13.51□□□□□ -0.25
RTN3-204ENST00000354497 PCSK9Q8NBP7 692 aaKnown RBP13.51□□□□□ -0.25
RTN3-204ENST00000354497 DDX11Q96FC9 970 aa13.51□□□□□ -0.25
RTN3-204ENST00000354497 C1orf115Q9H7X2 142 aa13.51□□□□□ -0.25
RTN3-204ENST00000354497 IL23AQ9NPF7 189 aa13.51□□□□□ -0.25
RTN3-204ENST00000354497 ARVCFO00192 962 aa13.5□□□□□ -0.25
RTN3-204ENST00000354497 IPO8O15397 1037 aaKnown RBP13.5□□□□□ -0.25
RTN3-204ENST00000354497 RABGGTBP53611 331 aa13.5□□□□□ -0.25
RTN3-204ENST00000354497 AAK1Q2M2I8 961 aa13.5□□□□□ -0.25
RTN3-204ENST00000354497 HERVK_113Q902F9 699 aa13.5□□□□□ -0.25
RTN3-204ENST00000354497 SWAP70Q9UH65 585 aa13.5□□□□□ -0.25
RTN3-204ENST00000354497 ELP1O95163 1332 aa13.5□□□□□ -0.25
RTN3-204ENST00000354497 ZBBXA8MT70 800 aa13.49□□□□□ -0.25
RTN3-204ENST00000354497 VWA5AO00534 786 aa13.49□□□□□ -0.25
RTN3-204ENST00000354497 DUSP11O75319 330 aaKnown RBP13.49□□□□□ -0.25
RTN3-204ENST00000354497 SNAI1O95863 264 aaPredicted RBP13.49□□□□□ -0.25
RTN3-204ENST00000354497 BMP1P13497 986 aa13.49□□□□□ -0.25
RTN3-204ENST00000354497 TRIM27P14373 513 aa13.49□□□□□ -0.25
RTN3-204ENST00000354497 COPB2P35606 906 aa13.49□□□□□ -0.25
RTN3-204ENST00000354497 CDK7P50613 346 aa13.49□□□□□ -0.25
RTN3-204ENST00000354497 FAM83BQ5T0W9 1011 aa13.49□□□□□ -0.25
RTN3-204ENST00000354497 SLC9C2Q5TAH2 1124 aa13.49□□□□□ -0.25
RTN3-204ENST00000354497 CCSAPQ6IQ19 270 aaPredicted RBP13.49□□□□□ -0.25
RTN3-204ENST00000354497 EAF2Q96CJ1 260 aaPredicted RBP13.49□□□□□ -0.25
RTN3-204ENST00000354497 CCDC136Q96JN2 1154 aa13.49□□□□□ -0.25
RTN3-204ENST00000354497 PPP1R9AQ9ULJ8 1098 aa13.49□□□□□ -0.25
RTN3-204ENST00000354497 CTDP1Q9Y5B0 961 aaPredicted RBP13.49□□□□□ -0.25
RTN3-204ENST00000354497 EEF2P13639 858 aaKnown RBP13.48□□□□□ -0.25
RTN3-204ENST00000354497 MYOGP15173 224 aa13.48□□□□□ -0.25
RTN3-204ENST00000354497 CCL23P55773 120 aa13.48□□□□□ -0.25
RTN3-204ENST00000354497 ATP8B2P98198 1209 aa13.48□□□□□ -0.25
RTN3-204ENST00000354497 ACVR2BQ13705 512 aa13.48□□□□□ -0.25
RTN3-204ENST00000354497 GNASQ5JWF2 1037 aa13.48□□□□□ -0.25
RTN3-204ENST00000354497 SNRNP48Q6IEG0 339 aaKnown RBP13.48□□□□□ -0.25
RTN3-204ENST00000354497 SIAH1Q8IUQ4 282 aa13.48□□□□□ -0.25
RTN3-204ENST00000354497 FAM126BQ8IXS8 530 aa13.48□□□□□ -0.25
RTN3-204ENST00000354497 TRMT2AQ8IZ69 625 aaKnown RBP13.48□□□□□ -0.25
RTN3-204ENST00000354497 LCORLQ8N3X6 602 aa13.48□□□□□ -0.25
RTN3-204ENST00000354497 SSH3Q8TE77 659 aa13.48□□□□□ -0.25
RTN3-204ENST00000354497 LRFN3Q9BTN0 628 aa13.48□□□□□ -0.25
RTN3-204ENST00000354497 HIPK3Q9H422 1215 aa13.48□□□□□ -0.25
RTN3-204ENST00000354497 EPHX3Q9H6B9 360 aa13.48□□□□□ -0.25
RTN3-204ENST00000354497 GOPCQ9HD26 462 aa13.48□□□□□ -0.25
RTN3-204ENST00000354497 DCP1AQ9NPI6 582 aaPredicted RBP13.48□□□□□ -0.25
RTN3-204ENST00000354497 SYNGAP1Q96PV0 1343 aa13.48□□□□□ -0.25
RTN3-204ENST00000354497 SMCHD1A6NHR9 2005 aa13.48□□□□□ -0.25
RTN3-204ENST00000354497 PDE6AP16499 860 aa13.47□□□□□ -0.25
RTN3-204ENST00000354497 CST5P28325 142 aaPredicted RBP13.47□□□□□ -0.25
RTN3-204ENST00000354497 NOL8Q76FK4 1167 aaKnown RBP13.47□□□□□ -0.25
RTN3-204ENST00000354497 AACSQ86V21 672 aa13.47□□□□□ -0.25
RTN3-204ENST00000354497 MSL3Q8N5Y2 521 aaKnown RBP13.47□□□□□ -0.25
RTN3-204ENST00000354497 ARMT1Q9H993 441 aa13.47□□□□□ -0.25
RTN3-204ENST00000354497 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms