RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 FSD2A1L4K1 749 aa16.58■□□□□ 0.24
COL17A1-201ENST00000353479 CDK8P49336 464 aa16.58■□□□□ 0.24
COL17A1-201ENST00000353479 XKR9Q5GH70 373 aa16.58■□□□□ 0.24
COL17A1-201ENST00000353479 SYT10Q6XYQ8 523 aa16.58■□□□□ 0.24
COL17A1-201ENST00000353479 CD209Q9NNX6 404 aa16.58■□□□□ 0.24
COL17A1-201ENST00000353479 M0QZ92 97 aa16.58■□□□□ 0.24
COL17A1-201ENST00000353479 BMP3P12645 472 aa16.58■□□□□ 0.24
COL17A1-201ENST00000353479 TERF1P54274 439 aa16.58■□□□□ 0.24
COL17A1-201ENST00000353479 ASIC2Q16515 512 aa16.58■□□□□ 0.24
COL17A1-201ENST00000353479 TMEM63CQ9P1W3 806 aa16.58■□□□□ 0.24
COL17A1-201ENST00000353479 PTPRUQ92729 1446 aa16.58■□□□□ 0.24
COL17A1-201ENST00000353479 DEPTORQ8TB45 409 aa16.58■□□□□ 0.24
COL17A1-201ENST00000353479 PPP1R9BQ96SB3 815 aa16.58■□□□□ 0.24
COL17A1-201ENST00000353479 SRRTQ9BXP5 876 aaKnown RBP16.58■□□□□ 0.24
COL17A1-201ENST00000353479 ERICH4A6NGS2 130 aa16.57■□□□□ 0.24
COL17A1-201ENST00000353479 FOSP01100 380 aaPredicted RBP16.57■□□□□ 0.24
COL17A1-201ENST00000353479 AOC3Q16853 763 aa16.57■□□□□ 0.24
COL17A1-201ENST00000353479 CHAMP1Q96JM3 812 aa16.57■□□□□ 0.24
COL17A1-201ENST00000353479 PCDHA4Q9UN74 947 aa16.57■□□□□ 0.24
COL17A1-201ENST00000353479 KRT9P35527 623 aa16.57■□□□□ 0.24
COL17A1-201ENST00000353479 PGBD1Q96JS3 809 aa16.57■□□□□ 0.24
COL17A1-201ENST00000353479 SPC25Q9HBM1 224 aa16.57■□□□□ 0.24
COL17A1-201ENST00000353479 ECE2O60344 883 aa16.57■□□□□ 0.24
COL17A1-201ENST00000353479 FAM47CQ5HY64 1035 aa16.57■□□□□ 0.24
COL17A1-201ENST00000353479 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.57■□□□□ 0.24
COL17A1-201ENST00000353479 IKBKGQ9Y6K9 419 aa16.57■□□□□ 0.24
COL17A1-201ENST00000353479 CD2BP2O95400 341 aaKnown RBP16.57■□□□□ 0.24
COL17A1-201ENST00000353479 KRT19P08727 400 aa16.57■□□□□ 0.24
COL17A1-201ENST00000353479 CMA1P23946 247 aa16.57■□□□□ 0.24
COL17A1-201ENST00000353479 CNGA1P29973 690 aa16.57■□□□□ 0.24
COL17A1-201ENST00000353479 CRKP46108 304 aa16.57■□□□□ 0.24
COL17A1-201ENST00000353479 CEP112Q8N8E3 955 aa16.57■□□□□ 0.24
COL17A1-201ENST00000353479 MARCH10Q8NA82 808 aaPredicted RBP16.57■□□□□ 0.24
COL17A1-201ENST00000353479 ZNF75DP51815 510 aa16.57■□□□□ 0.24
COL17A1-201ENST00000353479 FOXO4P98177 505 aa16.57■□□□□ 0.24
COL17A1-201ENST00000353479 CYP4A11Q02928 519 aa16.57■□□□□ 0.24
COL17A1-201ENST00000353479 KIAA1468Q9P260 1216 aa16.57■□□□□ 0.24
COL17A1-201ENST00000353479 KCTD2Q14681 263 aa16.56■□□□□ 0.24
COL17A1-201ENST00000353479 SYMPKQ92797 1274 aaKnown RBP16.56■□□□□ 0.24
COL17A1-201ENST00000353479 PCDHB13Q9Y5F0 798 aa16.56■□□□□ 0.24
COL17A1-201ENST00000353479 KIF22Q14807 665 aa16.56■□□□□ 0.24
COL17A1-201ENST00000353479 TSGA10Q9BZW7 698 aa16.56■□□□□ 0.24
COL17A1-201ENST00000353479 SHTN1A0MZ66 631 aa16.56■□□□□ 0.24
COL17A1-201ENST00000353479 TUBB4AP04350 444 aa16.56■□□□□ 0.24
COL17A1-201ENST00000353479 CBX1P83916 185 aa16.56■□□□□ 0.24
COL17A1-201ENST00000353479 UTP14CQ5TAP6 766 aaKnown RBP16.56■□□□□ 0.24
COL17A1-201ENST00000353479 KRT26Q7Z3Y9 468 aa16.56■□□□□ 0.24
COL17A1-201ENST00000353479 COA7Q96BR5 231 aa16.56■□□□□ 0.24
COL17A1-201ENST00000353479 RTEL1Q9NZ71 1219 aa16.56■□□□□ 0.24
COL17A1-201ENST00000353479 ZNF445P59923 1031 aa16.56■□□□□ 0.24
COL17A1-201ENST00000353479 CYP26C1Q6V0L0 522 aa16.56■□□□□ 0.24
COL17A1-201ENST00000353479 CEP170BQ9Y4F5 1589 aaPredicted RBP16.55■□□□□ 0.24
COL17A1-201ENST00000353479 CYP2D6P10635 497 aa16.55■□□□□ 0.24
COL17A1-201ENST00000353479 STAT2P52630 851 aa16.55■□□□□ 0.24
COL17A1-201ENST00000353479 GPSM2P81274 684 aa16.55■□□□□ 0.24
COL17A1-201ENST00000353479 NECTIN1Q15223 517 aa16.55■□□□□ 0.24
COL17A1-201ENST00000353479 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.55■□□□□ 0.24
COL17A1-201ENST00000353479 V9GYY5 206 aaPredicted RBP16.55■□□□□ 0.24
COL17A1-201ENST00000353479 CYP2J2P51589 502 aa16.55■□□□□ 0.24
COL17A1-201ENST00000353479 FOXP1Q9H334 677 aaPredicted RBP16.55■□□□□ 0.24
COL17A1-201ENST00000353479 SLC8A3P57103 927 aa16.55■□□□□ 0.24
COL17A1-201ENST00000353479 MYOCDQ8IZQ8 938 aa16.55■□□□□ 0.24
COL17A1-201ENST00000353479 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.55■□□□□ 0.24
COL17A1-201ENST00000353479 NUP58Q9BVL2 599 aa16.55■□□□□ 0.24
COL17A1-201ENST00000353479 PREX1Q8TCU6 1659 aa16.55■□□□□ 0.24
COL17A1-201ENST00000353479 NDUFA8P51970 172 aa16.55■□□□□ 0.24
COL17A1-201ENST00000353479 ZNF827Q17R98 1081 aa16.55■□□□□ 0.24
COL17A1-201ENST00000353479 ARMC9Q7Z3E5 817 aa16.55■□□□□ 0.24
COL17A1-201ENST00000353479 BRIP1Q9BX63 1249 aa16.55■□□□□ 0.24
COL17A1-201ENST00000353479 HSF2BPO75031 334 aa16.54■□□□□ 0.24
COL17A1-201ENST00000353479 PANK4Q9NVE7 773 aa16.54■□□□□ 0.24
COL17A1-201ENST00000353479 KRBA2Q6ZNG9 492 aa16.54■□□□□ 0.24
COL17A1-201ENST00000353479 FOXP4Q8IVH2 680 aaPredicted RBP16.54■□□□□ 0.24
COL17A1-201ENST00000353479 SUGCTQ9HAC7 445 aa16.54■□□□□ 0.24
COL17A1-201ENST00000353479 TNNI1P19237 187 aa16.54■□□□□ 0.24
COL17A1-201ENST00000353479 SYDE2Q5VT97 1194 aa16.54■□□□□ 0.24
COL17A1-201ENST00000353479 LONP1P36776 959 aaKnown RBP16.54■□□□□ 0.24
COL17A1-201ENST00000353479 DPP9Q86TI2 863 aa16.54■□□□□ 0.24
COL17A1-201ENST00000353479 ZNF277Q9NRM2 450 aaPredicted RBP16.54■□□□□ 0.24
COL17A1-201ENST00000353479 OSBPP22059 807 aa16.54■□□□□ 0.24
COL17A1-201ENST00000353479 PODNQ7Z5L7 613 aa16.54■□□□□ 0.24
COL17A1-201ENST00000353479 BBXQ8WY36 941 aaPredicted RBP16.54■□□□□ 0.24
COL17A1-201ENST00000353479 LRRC45Q96CN5 670 aa16.54■□□□□ 0.24
COL17A1-201ENST00000353479 PSMD1Q99460 953 aa16.54■□□□□ 0.24
COL17A1-201ENST00000353479 TDRD3Q9H7E2 651 aaKnown RBP16.54■□□□□ 0.24
COL17A1-201ENST00000353479 SLU7O95391 586 aaKnown RBP16.53■□□□□ 0.24
COL17A1-201ENST00000353479 TBC1D10BQ4KMP7 808 aaPredicted RBP16.53■□□□□ 0.24
COL17A1-201ENST00000353479 CSRNP2Q9H175 543 aa16.53■□□□□ 0.24
COL17A1-201ENST00000353479 KCNG1Q9UIX4 513 aa16.53■□□□□ 0.24
COL17A1-201ENST00000353479 K7ENM7 598 aa16.53■□□□□ 0.24
COL17A1-201ENST00000353479 MKRN3Q13064 507 aaKnown RBP16.53■□□□□ 0.24
COL17A1-201ENST00000353479 LRCH2Q5VUJ6 765 aa16.53■□□□□ 0.24
COL17A1-201ENST00000353479 SPOPO43791 374 aa16.53■□□□□ 0.24
COL17A1-201ENST00000353479 LARGE1O95461 756 aa16.53■□□□□ 0.24
COL17A1-201ENST00000353479 HS1BP3Q53T59 392 aa16.53■□□□□ 0.24
COL17A1-201ENST00000353479 FRMPD1Q5SYB0 1578 aa16.53■□□□□ 0.24
COL17A1-201ENST00000353479 CCNA1P78396 465 aa16.53■□□□□ 0.24
COL17A1-201ENST00000353479 SLC9C1Q4G0N8 1177 aa16.53■□□□□ 0.24
COL17A1-201ENST00000353479 GOLGA1Q92805 767 aa16.53■□□□□ 0.24
COL17A1-201ENST00000353479 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms