RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 E4F1Q66K89 784 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-203ENST00000343508 PNMA8AQ86V59 439 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-203ENST00000343508 CCDC25Q86WR0 208 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 VWDEQ8N2E2 1590 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 FTOQ9C0B1 505 aaKnown RBP eCLIP5.29□□□□□ -1.56
CSMD3-203ENST00000343508 DBNLQ9UJU6 430 aaKnown RBP5.29□□□□□ -1.56
CSMD3-203ENST00000343508 RGS16O15492 202 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-203ENST00000343508 RPN1P04843 607 aaKnown RBP5.29□□□□□ -1.56
CSMD3-203ENST00000343508 NR1D1P20393 614 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 ZAP70P43403 619 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 MICAL1Q8TDZ2 1067 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 EDC3Q96F86 508 aaKnown RBP5.29□□□□□ -1.56
CSMD3-203ENST00000343508 NT5C3AQ9H0P0 336 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 BLZF1Q9H2G9 400 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 KCNJ14Q9UNX9 436 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 WDR19Q8NEZ3 1342 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 TMEM132AQ24JP5 1023 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 RRAGAQ7L523 313 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 LRRC59Q96AG4 307 aaKnown RBP5.29□□□□□ -1.56
CSMD3-203ENST00000343508 TBC1D31Q96DN5 1066 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 L2HGDHQ9H9P8 463 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 SAMSN1Q9NSI8 373 aaKnown RBP5.29□□□□□ -1.56
CSMD3-203ENST00000343508 KIF3CO14782 793 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 CIAO1O76071 339 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 ADD1P35611 737 aaKnown RBP5.29□□□□□ -1.56
CSMD3-203ENST00000343508 ZNF827Q17R98 1081 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 PHLDB2Q86SQ0 1253 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 CLIC6Q96NY7 704 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 RABEP2Q9H5N1 569 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 TSPOAP1O95153 1857 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 KCNK3O14649 394 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 PPP1R14CQ8TAE6 165 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 CNOT6LQ96LI5 555 aaKnown RBP5.29□□□□□ -1.56
CSMD3-203ENST00000343508 SPZ1Q9BXG8 430 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 GLT8D2Q9H1C3 349 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 KDM3AQ9Y4C1 1321 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 ZPR1O75312 459 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 KIF23Q02241 960 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-203ENST00000343508 DRP2Q13474 957 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 DCAF17Q5H9S7 520 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-203ENST00000343508 PPP4R3AQ6IN85 833 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 CCHCR1Q8TD31 782 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 FAM207AQ9NSI2 230 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-203ENST00000343508 LRRD1A4D1F6 860 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 CCDC160A6NGH7 325 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 PTGDRQ13258 359 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 MUM1Q2TAK8 710 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.29□□□□□ -1.56
CSMD3-203ENST00000343508 UBE3CQ15386 1083 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 ARMCX5Q6P1M9 558 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 ZNF654Q8IZM8 581 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 ARHGEF2Q92974 986 aaKnown RBP5.29□□□□□ -1.56
CSMD3-203ENST00000343508 SLC20A2Q08357 652 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 TTC19Q6DKK2 380 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-203ENST00000343508 VSIG1Q86XK7 387 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 IFNL3Q8IZI9 196 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 GRK7Q8WTQ7 553 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.28□□□□□ -1.56
CSMD3-203ENST00000343508 DHTKD1Q96HY7 919 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-203ENST00000343508 ARMT1Q9H993 441 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 MCM9Q9NXL9 1143 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 STK36Q9NRP7 1315 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 KRIT1O00522 736 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 IRS4O14654 1257 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-203ENST00000343508 CETN3O15182 167 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 CEP104O60308 925 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 RBBP5Q15291 538 aaKnown RBP5.28□□□□□ -1.56
CSMD3-203ENST00000343508 CALCRLQ16602 461 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 THAP9Q9H5L6 903 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 BUB1O43683 1085 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 HLA-DOAP06340 250 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 GGCXP38435 758 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 APOA5Q6Q788 366 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 ZSCAN10Q96SZ4 725 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-203ENST00000343508 MYL10Q9BUA6 226 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 RIPOR2Q9Y4F9 1068 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 ABCC12Q96J65 1359 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 NRXN1Q9ULB1 1477 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 MFAP3LO75121 409 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 CLTAP09496 248 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 XRCC5P13010 732 aaKnown RBP5.28□□□□□ -1.56
CSMD3-203ENST00000343508 GUCY2FP51841 1108 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 SEPT2Q15019 361 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 CRACR2BQ8N4Y2 399 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-203ENST00000343508 SPATA5Q8NB90 893 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 COG1Q8WTW3 980 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.28□□□□□ -1.56
CSMD3-203ENST00000343508 RBM5P52756 815 aaKnown RBP eCLIP5.28□□□□□ -1.56
CSMD3-203ENST00000343508 PBKQ96KB5 322 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 VCX3BQ9H321 246 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 EPB41L5Q9HCM4 733 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 ATP1A3P13637 1013 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 C2orf54Q08AI8 447 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 KRT25Q7Z3Z0 450 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 P3H4Q92791 437 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 TRIM6Q9C030 488 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-203ENST00000343508 AATFQ9NY61 560 aaKnown RBP eCLIP5.28□□□□□ -1.56
CSMD3-203ENST00000343508 CABP7Q86V35 215 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 FANCBQ8NB91 859 aa5.28□□□□□ -1.56
CSMD3-203ENST00000343508 FAM89AQ96GI7 184 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms