RNA–Protein interactions for RNA: ENST00000339037.3

LINC01116-202, Transcript of long intergenic non-protein coding RNA 1116, humanhuman

TSL 3 BASIC

Gene LINC01116, Length 838 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01116-202ENST00000339037 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.72■□□□□ 0.59
LINC01116-202ENST00000339037 TEX13BQ9BXU2 312 aa18.72■□□□□ 0.59
LINC01116-202ENST00000339037 ECHDC1Q9NTX5 307 aa18.72■□□□□ 0.59
LINC01116-202ENST00000339037 CNPY2Q9Y2B0 182 aa18.72■□□□□ 0.59
LINC01116-202ENST00000339037 SMARCA5O60264 1052 aaPredicted RBP18.71■□□□□ 0.59
LINC01116-202ENST00000339037 PGK1P00558 417 aa18.71■□□□□ 0.59
LINC01116-202ENST00000339037 AKR1A1P14550 325 aa18.71■□□□□ 0.59
LINC01116-202ENST00000339037 TAL1P17542 331 aaPredicted RBP18.71■□□□□ 0.59
LINC01116-202ENST00000339037 STRBPQ96SI9 672 aaKnown RBP18.71■□□□□ 0.59
LINC01116-202ENST00000339037 NUP88Q99567 741 aaPredicted RBP18.71■□□□□ 0.59
LINC01116-202ENST00000339037 SLF1Q9BQI6 1058 aa18.71■□□□□ 0.59
LINC01116-202ENST00000339037 MKNK2Q9HBH9 465 aa18.71■□□□□ 0.59
LINC01116-202ENST00000339037 COL11A1P12107 1806 aaPredicted RBP18.71■□□□□ 0.59
LINC01116-202ENST00000339037 ZNF865P0CJ78 1059 aaPredicted RBP18.7■□□□□ 0.58
LINC01116-202ENST00000339037 RASA1P20936 1047 aa18.7■□□□□ 0.58
LINC01116-202ENST00000339037 SBK1Q52WX2 424 aa18.7■□□□□ 0.58
LINC01116-202ENST00000339037 C20orf194Q5TEA3 1177 aa18.7■□□□□ 0.58
LINC01116-202ENST00000339037 SNRNP48Q6IEG0 339 aaKnown RBP18.7■□□□□ 0.58
LINC01116-202ENST00000339037 GIMAP6Q6P9H5 292 aa18.7■□□□□ 0.58
LINC01116-202ENST00000339037 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.7■□□□□ 0.58
LINC01116-202ENST00000339037 TACC3Q9Y6A5 838 aa18.7■□□□□ 0.58
LINC01116-202ENST00000339037 A0A1W2PQ45 241 aaPredicted RBP18.69■□□□□ 0.58
LINC01116-202ENST00000339037 A0A1W2PQY0 241 aa18.69■□□□□ 0.58
LINC01116-202ENST00000339037 GSG1L2A8MUP6 293 aa18.69■□□□□ 0.58
LINC01116-202ENST00000339037 F5H6K3 240 aa18.69■□□□□ 0.58
LINC01116-202ENST00000339037 PQBP1O60828 265 aaKnown RBP18.69■□□□□ 0.58
LINC01116-202ENST00000339037 CLTBP09497 229 aa18.69■□□□□ 0.58
LINC01116-202ENST00000339037 KLRC3Q07444 240 aa18.69■□□□□ 0.58
LINC01116-202ENST00000339037 STK11IPQ8N1F8 1099 aa18.69■□□□□ 0.58
LINC01116-202ENST00000339037 KBTBD3Q8NAB2 608 aa18.69■□□□□ 0.58
LINC01116-202ENST00000339037 LENG1Q96BZ8 264 aaPredicted RBP18.69■□□□□ 0.58
LINC01116-202ENST00000339037 GPATCH3Q96I76 525 aa18.69■□□□□ 0.58
LINC01116-202ENST00000339037 NYAP2Q9P242 653 aa18.69■□□□□ 0.58
LINC01116-202ENST00000339037 SMCHD1A6NHR9 2005 aa18.69■□□□□ 0.58
LINC01116-202ENST00000339037 ZNFX1Q9P2E3 1918 aaKnown RBP18.68■□□□□ 0.58
LINC01116-202ENST00000339037 MINDY4BA8MYZ0 360 aa18.68■□□□□ 0.58
LINC01116-202ENST00000339037 NDUFB10O96000 172 aa18.68■□□□□ 0.58
LINC01116-202ENST00000339037 SMAD3P84022 425 aaKnown RBP18.68■□□□□ 0.58
LINC01116-202ENST00000339037 MSL3Q8N5Y2 521 aaKnown RBP18.68■□□□□ 0.58
LINC01116-202ENST00000339037 PRPF38AQ8NAV1 312 aaKnown RBP18.68■□□□□ 0.58
LINC01116-202ENST00000339037 APPBP2Q92624 585 aa18.68■□□□□ 0.58
LINC01116-202ENST00000339037 DDX11Q96FC9 970 aa18.68■□□□□ 0.58
LINC01116-202ENST00000339037 GREB1LQ9C091 1923 aaPredicted RBP18.68■□□□□ 0.58
LINC01116-202ENST00000339037 SYNGAP1Q96PV0 1343 aa18.68■□□□□ 0.58
LINC01116-202ENST00000339037 ADAMTS4O75173 837 aa18.67■□□□□ 0.58
LINC01116-202ENST00000339037 RASEFQ8IZ41 740 aa18.67■□□□□ 0.58
LINC01116-202ENST00000339037 OSBP2Q969R2 916 aa18.67■□□□□ 0.58
LINC01116-202ENST00000339037 CDX2Q99626 313 aaPredicted RBP18.67■□□□□ 0.58
LINC01116-202ENST00000339037 ZNF287Q9HBT7 754 aa18.67■□□□□ 0.58
LINC01116-202ENST00000339037 TTC28Q96AY4 2481 aa18.67■□□□□ 0.58
LINC01116-202ENST00000339037 SYNRGQ9UMZ2 1314 aa18.67■□□□□ 0.58
LINC01116-202ENST00000339037 PLXNA1Q9UIW2 1896 aa18.67■□□□□ 0.58
LINC01116-202ENST00000339037 KIAA0355O15063 1070 aa18.66■□□□□ 0.58
LINC01116-202ENST00000339037 RAG1P15918 1043 aa18.66■□□□□ 0.58
LINC01116-202ENST00000339037 ITGB8P26012 769 aa18.66■□□□□ 0.58
LINC01116-202ENST00000339037 SLC4A3P48751 1232 aa18.66■□□□□ 0.58
LINC01116-202ENST00000339037 TDO2P48775 406 aa18.66■□□□□ 0.58
LINC01116-202ENST00000339037 CPXCR1Q8N123 301 aa18.66■□□□□ 0.58
LINC01116-202ENST00000339037 NUP133Q8WUM0 1156 aa18.66■□□□□ 0.58
LINC01116-202ENST00000339037 RNPC3Q96LT9 517 aaKnown RBP18.66■□□□□ 0.58
LINC01116-202ENST00000339037 TSEN34Q9BSV6 310 aaKnown RBP18.66■□□□□ 0.58
LINC01116-202ENST00000339037 SEMA6BQ9H3T3 888 aa18.66■□□□□ 0.58
LINC01116-202ENST00000339037 EPB41L4AQ9HCS5 686 aaPredicted RBP18.66■□□□□ 0.58
LINC01116-202ENST00000339037 STARD7Q9NQZ5 370 aa18.66■□□□□ 0.58
LINC01116-202ENST00000339037 CLIP2Q9UDT6 1046 aa18.66■□□□□ 0.58
LINC01116-202ENST00000339037 ZHX1Q9UKY1 873 aaPredicted RBP18.66■□□□□ 0.58
LINC01116-202ENST00000339037 FAM184BQ9ULE4 1060 aa18.66■□□□□ 0.58
LINC01116-202ENST00000339037 RIPK3Q9Y572 518 aa18.66■□□□□ 0.58
LINC01116-202ENST00000339037 CTDP1Q9Y5B0 961 aaPredicted RBP18.66■□□□□ 0.58
LINC01116-202ENST00000339037 MUC3AQ02505 3323 aa18.65■□□□□ 0.58
LINC01116-202ENST00000339037 DNAJC25-GNG10A0A024R161 153 aa18.65■□□□□ 0.58
LINC01116-202ENST00000339037 ATP2A1O14983 1001 aa18.65■□□□□ 0.58
LINC01116-202ENST00000339037 GPAA1O43292 621 aa18.65■□□□□ 0.58
LINC01116-202ENST00000339037 ZBED4O75132 1171 aa18.65■□□□□ 0.58
LINC01116-202ENST00000339037 SNAI1O95863 264 aaPredicted RBP18.65■□□□□ 0.58
LINC01116-202ENST00000339037 ZFYP08048 801 aaPredicted RBP18.65■□□□□ 0.58
LINC01116-202ENST00000339037 GNAT2P19087 354 aa18.65■□□□□ 0.58
LINC01116-202ENST00000339037 ACLYP53396 1101 aa18.65■□□□□ 0.58
LINC01116-202ENST00000339037 TSHZ3Q63HK5 1081 aa18.65■□□□□ 0.58
LINC01116-202ENST00000339037 MAMDC4Q6UXC1 1216 aa18.65■□□□□ 0.58
LINC01116-202ENST00000339037 KIFC2Q96AC6 838 aa18.65■□□□□ 0.58
LINC01116-202ENST00000339037 FAM212AQ96EL1 285 aa18.65■□□□□ 0.58
LINC01116-202ENST00000339037 COL25A1Q9BXS0 654 aaPredicted RBP18.65■□□□□ 0.58
LINC01116-202ENST00000339037 TMEM39AQ9NV64 488 aa18.65■□□□□ 0.58
LINC01116-202ENST00000339037 CHD9Q3L8U1 2897 aa18.64■□□□□ 0.58
LINC01116-202ENST00000339037 IGKV6D-41A0A0C4DH26 115 aa18.64■□□□□ 0.57
LINC01116-202ENST00000339037 MOXD2PA6NHM9 499 aa18.64■□□□□ 0.57
LINC01116-202ENST00000339037 RNF113AO15541 343 aaKnown RBP18.64■□□□□ 0.57
LINC01116-202ENST00000339037 PRDM1O75626 825 aa18.64■□□□□ 0.57
LINC01116-202ENST00000339037 APPP05067 770 aa18.64■□□□□ 0.57
LINC01116-202ENST00000339037 EPHB4P54760 987 aa18.64■□□□□ 0.57
LINC01116-202ENST00000339037 FPGSQ05932 587 aa18.64■□□□□ 0.57
LINC01116-202ENST00000339037 ANKRD33Q7Z3H0 272 aa18.64■□□□□ 0.57
LINC01116-202ENST00000339037 ZNF467Q7Z7K2 595 aaPredicted RBP18.64■□□□□ 0.57
LINC01116-202ENST00000339037 ZNF444Q8N0Y2 327 aaPredicted RBP18.64■□□□□ 0.57
LINC01116-202ENST00000339037 CEP95Q96GE4 821 aa18.64■□□□□ 0.57
LINC01116-202ENST00000339037 TOX2Q96NM4 488 aa18.64■□□□□ 0.57
LINC01116-202ENST00000339037 TTYH1Q9H313 450 aaPredicted RBP18.64■□□□□ 0.57
LINC01116-202ENST00000339037 SLC38A10Q9HBR0 1119 aa18.64■□□□□ 0.57
LINC01116-202ENST00000339037 SYNPO2Q9UMS6 1093 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms