RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 RGS22Q8NE09 1264 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 ACER1Q8TDN7 264 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 MKL1Q969V6 931 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 GLIS2Q9BZE0 524 aaPredicted RBP4.77□□□□□ -1.65
MCF2-201ENST00000338585 DEFB129Q9H1M3 183 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 FOXP1Q9H334 677 aaPredicted RBP4.77□□□□□ -1.65
MCF2-201ENST00000338585 GGA3Q9NZ52 723 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 ZBTB21Q9ULJ3 1066 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 PHF20L1A8MW92 1017 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 F5H6K3 240 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 STXBP3O00186 592 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 TBC1D12O60347 775 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 NDUFB10O96000 172 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 XBP1P17861 261 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 KRT2P35908 639 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 SLC1A4P43007 532 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 NASPP49321 788 aaPredicted RBP4.77□□□□□ -1.65
MCF2-201ENST00000338585 NLRP5P59047 1200 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 KLRC3Q07444 240 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 SF3A1Q15459 793 aaKnown RBP4.77□□□□□ -1.65
MCF2-201ENST00000338585 ZYXQ15942 572 aaKnown RBP4.77□□□□□ -1.65
MCF2-201ENST00000338585 CSPP1Q1MSJ5 1256 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 ASPRV1Q53RT3 343 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 KIAA1755Q5JYT7 1200 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 ANO1Q5XXA6 986 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 SLFN13Q68D06 897 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 ADGRF4Q8IZF3 695 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 RASGRP4Q8TDF6 673 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 TNFRSF25Q93038 417 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 LZTS2Q9BRK4 669 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 TMEM121BQ9BXQ6 578 aaPredicted RBP4.77□□□□□ -1.65
MCF2-201ENST00000338585 RIOX1Q9H6W3 641 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 CABP5Q9NP86 173 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 POLR3EQ9NVU0 708 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 MRVI1Q9Y6F6 885 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 SYCE3A1L190 88 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 GOLGA6L4A6NEF3 574 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 USP17L10C9JJH3 530 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 PPP1R11O60927 126 aaPredicted RBP4.76□□□□□ -1.65
MCF2-201ENST00000338585 MARCKSP29966 332 aaPredicted RBP4.76□□□□□ -1.65
MCF2-201ENST00000338585 CAP2P40123 477 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 ME1P48163 572 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 MMP14P50281 582 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 SNAP25P60880 206 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 MAP3K10Q02779 954 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 TNFAIP1Q13829 316 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 STK38Q15208 465 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 PTPAQ15257 358 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 ATL3Q6DD88 541 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 BICD2Q8TD16 824 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 COA7Q96BR5 231 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 RRP36Q96EU6 259 aaKnown RBP4.76□□□□□ -1.65
MCF2-201ENST00000338585 GOLPH3LQ9H4A5 285 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 JMJD4Q9H9V9 463 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 BARHL2Q9NY43 387 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 PCDHA7Q9UN72 937 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 PCDHB6Q9Y5E3 794 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 SPTLC2O15270 562 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 NR1I2O75469 434 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 YEATS4O95619 227 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 TAL1P17542 331 aaPredicted RBP4.76□□□□□ -1.65
MCF2-201ENST00000338585 INPP5BP32019 993 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 DEKP35659 375 aaKnown RBP4.76□□□□□ -1.65
MCF2-201ENST00000338585 NAPAP54920 295 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 DGKZQ13574 1117 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 SLC39A14Q15043 492 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 GPR162Q16538 588 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 GPATCH4Q5T3I0 446 aaKnown RBP4.76□□□□□ -1.65
MCF2-201ENST00000338585 PIK3AP1Q6ZUJ8 805 aa4.76□□□□□ -1.65
MCF2-201ENST00000338585 SEC63Q9UGP8 760 aaKnown RBP4.76□□□□□ -1.65
MCF2-201ENST00000338585 ATXN8OSP0DMR3 200 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 SMARCA1P28370 1054 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 GRIN1Q05586 938 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 PPP4R3BQ5MIZ7 849 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 AXDND1Q5T1B0 1012 aaPredicted RBP4.75□□□□□ -1.65
MCF2-201ENST00000338585 CCAR1Q8IX12 1150 aaKnown RBP4.75□□□□□ -1.65
MCF2-201ENST00000338585 BLIDQ8IZY5 108 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 GMCL1P1Q8NEA9 526 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 DCAF4Q8WV16 495 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 GMCL1Q96IK5 515 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 CLIC6Q96NY7 704 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 ARHGEF10LQ9HCE6 1279 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 SH3GLB2Q9NR46 395 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 DACT1Q9NYF0 836 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 PCDHA4Q9UN74 947 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 SSC5DA1L4H1 1573 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 POLR2AP24928 1970 aaKnown RBP4.75□□□□□ -1.65
MCF2-201ENST00000338585 SMCO2A6NFE2 343 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 TMEM232C9JQI7 657 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 M0R2N6 131 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 BMP3P12645 472 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 ZNF445P59923 1031 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 CAMK4Q16566 473 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 QRICH1Q2TAL8 776 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 RILPL1Q5EBL4 403 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 FAM83BQ5T0W9 1011 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 CCDC183Q5T5S1 534 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 APOBEC3FQ8IUX4 373 aaKnown RBP4.75□□□□□ -1.65
MCF2-201ENST00000338585 FSIP1Q8NA03 581 aa4.75□□□□□ -1.65
MCF2-201ENST00000338585 KCNG4Q8TDN1 519 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms