RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 TRIM56Q9BRZ2 755 aaKnown RBP15.61■□□□□ 0.09
COL7A1-201ENST00000328333 DNM3Q9UQ16 869 aa15.61■□□□□ 0.09
COL7A1-201ENST00000328333 BLMP54132 1417 aaPredicted RBP15.6■□□□□ 0.09
COL7A1-201ENST00000328333 CCDC138Q96M89 665 aa15.6■□□□□ 0.09
COL7A1-201ENST00000328333 SLF1Q9BQI6 1058 aa15.6■□□□□ 0.09
COL7A1-201ENST00000328333 MID2Q9UJV3 735 aa15.6■□□□□ 0.09
COL7A1-201ENST00000328333 TAF11Q15544 211 aa15.6■□□□□ 0.09
COL7A1-201ENST00000328333 NBPF5PQ86XG9 351 aaPredicted RBP15.6■□□□□ 0.09
COL7A1-201ENST00000328333 C6orf229H3BNL8 230 aa15.6■□□□□ 0.09
COL7A1-201ENST00000328333 IRX1P78414 480 aaPredicted RBP15.6■□□□□ 0.09
COL7A1-201ENST00000328333 TYW1BQ6NUM6 668 aa15.6■□□□□ 0.09
COL7A1-201ENST00000328333 LMBRD1Q9NUN5 540 aa15.6■□□□□ 0.09
COL7A1-201ENST00000328333 POLR3CQ9BUI4 534 aaPredicted RBP15.6■□□□□ 0.09
COL7A1-201ENST00000328333 STOML1Q9UBI4 398 aa15.6■□□□□ 0.09
COL7A1-201ENST00000328333 HDAC4P56524 1084 aa15.6■□□□□ 0.09
COL7A1-201ENST00000328333 STX1BP61266 288 aa15.6■□□□□ 0.09
COL7A1-201ENST00000328333 MAP3K10Q02779 954 aa15.6■□□□□ 0.09
COL7A1-201ENST00000328333 NXNQ6DKJ4 435 aa15.6■□□□□ 0.09
COL7A1-201ENST00000328333 PIP4K2CQ8TBX8 421 aa15.6■□□□□ 0.09
COL7A1-201ENST00000328333 CHPF2Q9P2E5 772 aa15.6■□□□□ 0.09
COL7A1-201ENST00000328333 RIMS2Q9UQ26 1411 aa15.6■□□□□ 0.09
COL7A1-201ENST00000328333 KCNK3O14649 394 aa15.6■□□□□ 0.09
COL7A1-201ENST00000328333 INHBAP08476 426 aa15.6■□□□□ 0.09
COL7A1-201ENST00000328333 RAB44Q7Z6P3 723 aaPredicted RBP15.6■□□□□ 0.09
COL7A1-201ENST00000328333 REXO1Q8N1G1 1221 aaKnown RBP15.6■□□□□ 0.09
COL7A1-201ENST00000328333 CATSPER1Q8NEC5 780 aa15.6■□□□□ 0.09
COL7A1-201ENST00000328333 MEIS3Q99687 375 aa15.6■□□□□ 0.09
COL7A1-201ENST00000328333 METTL14Q9HCE5 456 aaKnown RBP15.6■□□□□ 0.09
COL7A1-201ENST00000328333 MAP3K5Q99683 1374 aa15.59■□□□□ 0.09
COL7A1-201ENST00000328333 NPC1L1Q9UHC9 1359 aa15.59■□□□□ 0.09
COL7A1-201ENST00000328333 CTNND1O60716 968 aaKnown RBP15.59■□□□□ 0.09
COL7A1-201ENST00000328333 TEDDM1Q5T9Z0 273 aa15.59■□□□□ 0.09
COL7A1-201ENST00000328333 TTC25Q96NG3 672 aa15.59■□□□□ 0.09
COL7A1-201ENST00000328333 PALMDQ9NP74 551 aa15.59■□□□□ 0.09
COL7A1-201ENST00000328333 PNMA2Q9UL42 364 aa15.59■□□□□ 0.09
COL7A1-201ENST00000328333 CLASP1Q7Z460 1538 aa15.59■□□□□ 0.09
COL7A1-201ENST00000328333 PYGLP06737 847 aa15.59■□□□□ 0.09
COL7A1-201ENST00000328333 MYH7P12883 1935 aa15.59■□□□□ 0.09
COL7A1-201ENST00000328333 ARHGEF35A5YM69 484 aa15.59■□□□□ 0.09
COL7A1-201ENST00000328333 MCF2P10911 925 aa15.59■□□□□ 0.09
COL7A1-201ENST00000328333 RNF34Q969K3 372 aa15.59■□□□□ 0.09
COL7A1-201ENST00000328333 KDM5BQ9UGL1 1544 aa15.59■□□□□ 0.09
COL7A1-201ENST00000328333 MAPK13O15264 365 aa15.59■□□□□ 0.09
COL7A1-201ENST00000328333 NSFP46459 744 aaKnown RBP15.59■□□□□ 0.09
COL7A1-201ENST00000328333 BPIFB4P59827 614 aa15.59■□□□□ 0.09
COL7A1-201ENST00000328333 BRDTQ58F21 947 aaPredicted RBP15.59■□□□□ 0.09
COL7A1-201ENST00000328333 MPRIPQ6WCQ1 1025 aa15.59■□□□□ 0.09
COL7A1-201ENST00000328333 LAD1O00515 517 aa15.59■□□□□ 0.09
COL7A1-201ENST00000328333 HNRNPCL1O60812 293 aaKnown RBP15.59■□□□□ 0.09
COL7A1-201ENST00000328333 GUCY2CP25092 1073 aa15.59■□□□□ 0.09
COL7A1-201ENST00000328333 ADCY2Q08462 1091 aa15.59■□□□□ 0.09
COL7A1-201ENST00000328333 GLE1Q53GS7 698 aaKnown RBP15.59■□□□□ 0.09
COL7A1-201ENST00000328333 PYGBP11216 843 aa15.58■□□□□ 0.09
COL7A1-201ENST00000328333 KRT81Q14533 505 aa15.58■□□□□ 0.09
COL7A1-201ENST00000328333 RRAGAQ7L523 313 aa15.58■□□□□ 0.09
COL7A1-201ENST00000328333 MRPL50Q8N5N7 158 aaKnown RBP15.58■□□□□ 0.09
COL7A1-201ENST00000328333 CHMP2AO43633 222 aa15.58■□□□□ 0.09
COL7A1-201ENST00000328333 LRRC8BQ6P9F7 803 aa15.58■□□□□ 0.09
COL7A1-201ENST00000328333 TRIM50Q86XT4 487 aa15.58■□□□□ 0.09
COL7A1-201ENST00000328333 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.58■□□□□ 0.09
COL7A1-201ENST00000328333 KRT4P19013 534 aa15.58■□□□□ 0.08
COL7A1-201ENST00000328333 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.58■□□□□ 0.08
COL7A1-201ENST00000328333 TCP11Q8WWU5 503 aa15.58■□□□□ 0.08
COL7A1-201ENST00000328333 ABTB1Q969K4 478 aaPredicted RBP15.58■□□□□ 0.08
COL7A1-201ENST00000328333 CEP19Q96LK0 163 aa15.58■□□□□ 0.08
COL7A1-201ENST00000328333 TEX12Q9BXU0 123 aa15.58■□□□□ 0.08
COL7A1-201ENST00000328333 FLT4P35916 1363 aa15.58■□□□□ 0.08
COL7A1-201ENST00000328333 SYNMO15061 1565 aa15.58■□□□□ 0.08
COL7A1-201ENST00000328333 ARHGAP31Q2M1Z3 1444 aa15.58■□□□□ 0.08
COL7A1-201ENST00000328333 POLR2BP30876 1174 aaKnown RBP15.58■□□□□ 0.08
COL7A1-201ENST00000328333 MORC3Q14149 939 aa15.58■□□□□ 0.08
COL7A1-201ENST00000328333 BEND3Q5T5X7 828 aa15.58■□□□□ 0.08
COL7A1-201ENST00000328333 IFT122Q9HBG6 1241 aa15.58■□□□□ 0.08
COL7A1-201ENST00000328333 MCM9Q9NXL9 1143 aa15.58■□□□□ 0.08
COL7A1-201ENST00000328333 HADHQ16836 314 aaKnown RBP15.58■□□□□ 0.08
COL7A1-201ENST00000328333 KLHL29Q96CT2 875 aa15.58■□□□□ 0.08
COL7A1-201ENST00000328333 GIMAP4Q9NUV9 329 aa15.58■□□□□ 0.08
COL7A1-201ENST00000328333 TRPM2O94759 1503 aa15.58■□□□□ 0.08
COL7A1-201ENST00000328333 BACH1O14867 736 aa15.58■□□□□ 0.08
COL7A1-201ENST00000328333 ATG16L1Q676U5 607 aa15.58■□□□□ 0.08
COL7A1-201ENST00000328333 SHANK2Q9UPX8 1470 aa15.58■□□□□ 0.08
COL7A1-201ENST00000328333 SHROOM2Q13796 1616 aa15.58■□□□□ 0.08
COL7A1-201ENST00000328333 HARSP12081 509 aaKnown RBP15.58■□□□□ 0.08
COL7A1-201ENST00000328333 PGRMC1O00264 195 aaKnown RBP15.57■□□□□ 0.08
COL7A1-201ENST00000328333 PPP1R12AO14974 1030 aaPredicted RBP15.57■□□□□ 0.08
COL7A1-201ENST00000328333 PDE6CP51160 858 aa15.57■□□□□ 0.08
COL7A1-201ENST00000328333 MAGEB6Q8N7X4 407 aa15.57■□□□□ 0.08
COL7A1-201ENST00000328333 HOXB7P09629 217 aa15.57■□□□□ 0.08
COL7A1-201ENST00000328333 EEF1B2P24534 225 aaKnown RBP15.57■□□□□ 0.08
COL7A1-201ENST00000328333 COL17A1Q9UMD9 1497 aaPredicted RBP15.57■□□□□ 0.08
COL7A1-201ENST00000328333 CHGBP05060 677 aa15.57■□□□□ 0.08
COL7A1-201ENST00000328333 SERPINB2P05120 415 aa15.57■□□□□ 0.08
COL7A1-201ENST00000328333 IRX5P78411 483 aaPredicted RBP15.57■□□□□ 0.08
COL7A1-201ENST00000328333 SNRKQ9NRH2 765 aa15.57■□□□□ 0.08
COL7A1-201ENST00000328333 VPS41P49754 854 aa15.57■□□□□ 0.08
COL7A1-201ENST00000328333 ANKRD42Q8N9B4 389 aa15.57■□□□□ 0.08
COL7A1-201ENST00000328333 MRGBPQ9NV56 204 aa15.57■□□□□ 0.08
COL7A1-201ENST00000328333 RNASE9P60153 205 aaKnown RBP15.57■□□□□ 0.08
COL7A1-201ENST00000328333 CDR2Q01850 454 aa15.57■□□□□ 0.08
COL7A1-201ENST00000328333 UNC13AQ9UPW8 1703 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms