RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 PKN1Q16512 942 aa11.57□□□□□ -0.56
HMGB3-201ENST00000325307 GPKOWQ92917 476 aaPredicted RBP eCLIP11.57□□□□□ -0.56
HMGB3-201ENST00000325307 GMCL1Q96IK5 515 aa11.57□□□□□ -0.56
HMGB3-201ENST00000325307 PIGSQ96S52 555 aa11.57□□□□□ -0.56
HMGB3-201ENST00000325307 SYNPO2Q9UMS6 1093 aa11.57□□□□□ -0.56
HMGB3-201ENST00000325307 MTMR2Q13614 643 aa11.56□□□□□ -0.56
HMGB3-201ENST00000325307 VGLL4Q14135 290 aa11.56□□□□□ -0.56
HMGB3-201ENST00000325307 SLC35G1Q2M3R5 365 aa11.56□□□□□ -0.56
HMGB3-201ENST00000325307 FAM83BQ5T0W9 1011 aa11.56□□□□□ -0.56
HMGB3-201ENST00000325307 MOB2Q70IA6 237 aa11.56□□□□□ -0.56
HMGB3-201ENST00000325307 LDHDQ86WU2 507 aa11.56□□□□□ -0.56
HMGB3-201ENST00000325307 USP17L10C9JJH3 530 aa11.56□□□□□ -0.56
HMGB3-201ENST00000325307 PFKFB3Q16875 520 aaPredicted RBP11.56□□□□□ -0.56
HMGB3-201ENST00000325307 ARMC9Q7Z3E5 817 aa11.56□□□□□ -0.56
HMGB3-201ENST00000325307 ADGRF4Q8IZF3 695 aa11.56□□□□□ -0.56
HMGB3-201ENST00000325307 ZFP91Q96JP5 570 aaPredicted RBP11.56□□□□□ -0.56
HMGB3-201ENST00000325307 LMBRD1Q9NUN5 540 aa11.56□□□□□ -0.56
HMGB3-201ENST00000325307 ZNF280CQ8ND82 737 aa11.56□□□□□ -0.56
HMGB3-201ENST00000325307 GOLGA6L22H0YM25 854 aa11.55□□□□□ -0.56
HMGB3-201ENST00000325307 CLCN1P35523 988 aa11.55□□□□□ -0.56
HMGB3-201ENST00000325307 FMR1Q06787 632 aaKnown RBP eCLIP11.55□□□□□ -0.568e-19■■■■■ 65.9
HMGB3-201ENST00000325307 KIAA1755Q5JYT7 1200 aa11.55□□□□□ -0.56
HMGB3-201ENST00000325307 FAM173BQ6P4H8 233 aa11.55□□□□□ -0.56
HMGB3-201ENST00000325307 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.55□□□□□ -0.56
HMGB3-201ENST00000325307 ZSCAN16Q9H4T2 348 aaPredicted RBP11.55□□□□□ -0.56
HMGB3-201ENST00000325307 SMARCA1P28370 1054 aa11.55□□□□□ -0.56
HMGB3-201ENST00000325307 NLRP5P59047 1200 aa11.55□□□□□ -0.56
HMGB3-201ENST00000325307 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.55□□□□□ -0.56
HMGB3-201ENST00000325307 KIAA1683Q9H0B3 1180 aa11.55□□□□□ -0.56
HMGB3-201ENST00000325307 ELP3Q9H9T3 547 aa11.55□□□□□ -0.56
HMGB3-201ENST00000325307 MYH15Q9Y2K3 1946 aa11.55□□□□□ -0.56
HMGB3-201ENST00000325307 STAT2P52630 851 aa11.54□□□□□ -0.56
HMGB3-201ENST00000325307 USP14P54578 494 aa11.54□□□□□ -0.56
HMGB3-201ENST00000325307 NOL9Q5SY16 702 aaKnown RBP11.54□□□□□ -0.56
HMGB3-201ENST00000325307 ANKRD13AQ8IZ07 590 aa11.54□□□□□ -0.56
HMGB3-201ENST00000325307 RIOX1Q9H6W3 641 aa11.54□□□□□ -0.56
HMGB3-201ENST00000325307 JMJD4Q9H9V9 463 aa11.54□□□□□ -0.56
HMGB3-201ENST00000325307 BRMS1Q9HCU9 246 aa11.54□□□□□ -0.56
HMGB3-201ENST00000325307 DGKZQ13574 1117 aa11.54□□□□□ -0.56
HMGB3-201ENST00000325307 SYDE2Q5VT97 1194 aa11.54□□□□□ -0.56
HMGB3-201ENST00000325307 TANGO6Q9C0B7 1094 aa11.54□□□□□ -0.56
HMGB3-201ENST00000325307 SNCAIPQ9Y6H5 919 aa11.54□□□□□ -0.56
HMGB3-201ENST00000325307 MMP1P03956 469 aa11.54□□□□□ -0.56
HMGB3-201ENST00000325307 NAPAP54920 295 aa11.54□□□□□ -0.56
HMGB3-201ENST00000325307 DNM1Q05193 864 aaKnown RBP11.54□□□□□ -0.56
HMGB3-201ENST00000325307 RESTQ13127 1097 aa11.54□□□□□ -0.56
HMGB3-201ENST00000325307 GAS2L3Q86XJ1 694 aa11.54□□□□□ -0.56
HMGB3-201ENST00000325307 DIS3L2Q8IYB7 885 aaKnown RBP11.54□□□□□ -0.56
HMGB3-201ENST00000325307 KIFC2Q96AC6 838 aa11.54□□□□□ -0.56
HMGB3-201ENST00000325307 WDR18Q9BV38 432 aa11.54□□□□□ -0.56
HMGB3-201ENST00000325307 HMGCS2P54868 508 aa11.53□□□□□ -0.56
HMGB3-201ENST00000325307 BACE1P56817 501 aa11.53□□□□□ -0.56
HMGB3-201ENST00000325307 SNAP25P60880 206 aa11.53□□□□□ -0.56
HMGB3-201ENST00000325307 KIF23Q02241 960 aaPredicted RBP11.53□□□□□ -0.56
HMGB3-201ENST00000325307 WWC2Q6AWC2 1192 aa11.53□□□□□ -0.56
HMGB3-201ENST00000325307 TEX2Q8IWB9 1127 aa11.53□□□□□ -0.56
HMGB3-201ENST00000325307 CHURC1Q8WUH1 139 aa11.53□□□□□ -0.56
HMGB3-201ENST00000325307 LPAR1Q92633 364 aa11.53□□□□□ -0.56
HMGB3-201ENST00000325307 CLMNQ96JQ2 1002 aa11.53□□□□□ -0.56
HMGB3-201ENST00000325307 ATAD5Q96QE3 1844 aa11.53□□□□□ -0.56
HMGB3-201ENST00000325307 CCDC148Q8NFR7 591 aa11.53□□□□□ -0.56
HMGB3-201ENST00000325307 OTUD5Q96G74 571 aa11.53□□□□□ -0.56
HMGB3-201ENST00000325307 TMOD4Q9NZQ9 345 aa11.53□□□□□ -0.56
HMGB3-201ENST00000325307 PNMA6FA0A0J9YX94 578 aa11.53□□□□□ -0.56
HMGB3-201ENST00000325307 BTBD18B2RXH4 712 aa11.53□□□□□ -0.56
HMGB3-201ENST00000325307 ZBTB5O15062 677 aa11.53□□□□□ -0.56
HMGB3-201ENST00000325307 CDC37Q16543 378 aaPredicted RBP11.53□□□□□ -0.56
HMGB3-201ENST00000325307 GPT2Q8TD30 523 aa11.53□□□□□ -0.56
HMGB3-201ENST00000325307 CCDC12Q8WUD4 166 aaPredicted RBP11.53□□□□□ -0.56
HMGB3-201ENST00000325307 GPBP1L1Q9HC44 474 aaPredicted RBP11.53□□□□□ -0.56
HMGB3-201ENST00000325307 BARHL2Q9NY43 387 aa11.53□□□□□ -0.56
HMGB3-201ENST00000325307 MYH6P13533 1939 aa11.53□□□□□ -0.56
HMGB3-201ENST00000325307 KIF28PB7ZC32 967 aa11.52□□□□□ -0.56
HMGB3-201ENST00000325307 WDR46O15213 610 aaKnown RBP11.52□□□□□ -0.56
HMGB3-201ENST00000325307 FIBPO43427 364 aa11.52□□□□□ -0.56
HMGB3-201ENST00000325307 KRT2P35908 639 aa11.52□□□□□ -0.56
HMGB3-201ENST00000325307 KLHL40Q2TBA0 621 aa11.52□□□□□ -0.56
HMGB3-201ENST00000325307 TPRNQ4KMQ1 711 aa11.52□□□□□ -0.56
HMGB3-201ENST00000325307 COA7Q96BR5 231 aa11.52□□□□□ -0.56
HMGB3-201ENST00000325307 GDPD2Q9HCC8 539 aa11.52□□□□□ -0.56
HMGB3-201ENST00000325307 TFIP11Q9UBB9 837 aaKnown RBP11.52□□□□□ -0.56
HMGB3-201ENST00000325307 CNPY2Q9Y2B0 182 aa11.52□□□□□ -0.56
HMGB3-201ENST00000325307 DOCK1Q14185 1865 aa11.52□□□□□ -0.56
HMGB3-201ENST00000325307 CELF2O95319 508 aaKnown RBP11.52□□□□□ -0.57
HMGB3-201ENST00000325307 XRCC6P12956 609 aaKnown RBP eCLIP11.52□□□□□ -0.57
HMGB3-201ENST00000325307 VCAM1P19320 739 aa11.52□□□□□ -0.57
HMGB3-201ENST00000325307 CEBPZQ03701 1054 aaKnown RBP11.52□□□□□ -0.57
HMGB3-201ENST00000325307 HSP90AA2PQ14568 343 aaPredicted RBP11.52□□□□□ -0.57
HMGB3-201ENST00000325307 BRAPQ7Z569 592 aa11.52□□□□□ -0.57
HMGB3-201ENST00000325307 PHF20Q9BVI0 1012 aa11.52□□□□□ -0.57
HMGB3-201ENST00000325307 EMILIN3Q9NT22 766 aa11.52□□□□□ -0.57
HMGB3-201ENST00000325307 FBXO28Q9NVF7 368 aa11.52□□□□□ -0.57
HMGB3-201ENST00000325307 FEM1BQ9UK73 627 aa11.52□□□□□ -0.57
HMGB3-201ENST00000325307 C19orf81C9J6K1 198 aa11.52□□□□□ -0.57
HMGB3-201ENST00000325307 STXBP3O00186 592 aa11.52□□□□□ -0.57
HMGB3-201ENST00000325307 CALML3P27482 149 aa11.52□□□□□ -0.57
HMGB3-201ENST00000325307 KRT85P78386 507 aa11.52□□□□□ -0.57
HMGB3-201ENST00000325307 NR5A1Q13285 461 aa11.52□□□□□ -0.57
HMGB3-201ENST00000325307 QRICH1Q2TAL8 776 aa11.52□□□□□ -0.57
HMGB3-201ENST00000325307 FAM160B2Q86V87 743 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms