RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 HSPA1LP34931 641 aa12.7□□□□□ -0.38
VPS39-201ENST00000318006 BCAMP50895 628 aa12.7□□□□□ -0.38
VPS39-201ENST00000318006 PUS3Q9BZE2 481 aaKnown RBP12.7□□□□□ -0.38
VPS39-201ENST00000318006 PTCH1Q13635 1447 aa12.7□□□□□ -0.38
VPS39-201ENST00000318006 LOC102724428A0A0B4J2F2 783 aa12.7□□□□□ -0.38
VPS39-201ENST00000318006 SMIM24O75264 130 aa12.7□□□□□ -0.38
VPS39-201ENST00000318006 FLOT1O75955 427 aa12.7□□□□□ -0.38
VPS39-201ENST00000318006 EPB41P11171 864 aaKnown RBP12.7□□□□□ -0.38
VPS39-201ENST00000318006 GYG1P46976 350 aa12.7□□□□□ -0.38
VPS39-201ENST00000318006 SIK1P57059 783 aa12.7□□□□□ -0.38
VPS39-201ENST00000318006 KLHL30Q0D2K2 578 aa12.7□□□□□ -0.38
VPS39-201ENST00000318006 TGFBRAP1Q8WUH2 860 aa12.7□□□□□ -0.38
VPS39-201ENST00000318006 FANCLQ9NW38 375 aa12.7□□□□□ -0.38
VPS39-201ENST00000318006 TPX2Q9ULW0 747 aaKnown RBP12.7□□□□□ -0.38
VPS39-201ENST00000318006 A2ML1A8K2U0 1454 aa12.7□□□□□ -0.38
VPS39-201ENST00000318006 UBE3CQ15386 1083 aa12.7□□□□□ -0.38
VPS39-201ENST00000318006 NBPF14Q5TI25 921 aa12.7□□□□□ -0.38
VPS39-201ENST00000318006 RASIP1Q5U651 963 aa12.7□□□□□ -0.38
VPS39-201ENST00000318006 TRIML1Q8N9V2 468 aa12.7□□□□□ -0.38
VPS39-201ENST00000318006 VPS54Q9P1Q0 977 aa12.7□□□□□ -0.38
VPS39-201ENST00000318006 LARSQ9P2J5 1176 aaKnown RBP12.7□□□□□ -0.38
VPS39-201ENST00000318006 MYO1AQ9UBC5 1043 aa12.7□□□□□ -0.38
VPS39-201ENST00000318006 SERTAD1Q9UHV2 236 aa12.7□□□□□ -0.38
VPS39-201ENST00000318006 CMA1P23946 247 aa12.69□□□□□ -0.38
VPS39-201ENST00000318006 IL6STP40189 918 aaPredicted RBP12.69□□□□□ -0.38
VPS39-201ENST00000318006 TXKP42681 527 aa12.69□□□□□ -0.38
VPS39-201ENST00000318006 TYW1BQ6NUM6 668 aa12.69□□□□□ -0.38
VPS39-201ENST00000318006 PARD6BQ9BYG5 372 aa12.69□□□□□ -0.38
VPS39-201ENST00000318006 IMPG2Q9BZV3 1241 aa12.69□□□□□ -0.38
VPS39-201ENST00000318006 RABGAP1Q9Y3P9 1069 aa12.69□□□□□ -0.38
VPS39-201ENST00000318006 E2F5Q15329 346 aa12.69□□□□□ -0.38
VPS39-201ENST00000318006 ADCK5Q3MIX3 580 aa12.69□□□□□ -0.38
VPS39-201ENST00000318006 SFMBT2Q5VUG0 894 aa12.69□□□□□ -0.38
VPS39-201ENST00000318006 ADCY9O60503 1353 aa12.69□□□□□ -0.38
VPS39-201ENST00000318006 hCG_1642624A0A1W2PR95 340 aa12.69□□□□□ -0.38
VPS39-201ENST00000318006 KRT15P19012 456 aa12.69□□□□□ -0.38
VPS39-201ENST00000318006 FAM47AQ5JRC9 791 aa12.69□□□□□ -0.38
VPS39-201ENST00000318006 ZMYM1Q5SVZ6 1142 aa12.69□□□□□ -0.38
VPS39-201ENST00000318006 ANKRD42Q8N9B4 389 aa12.69□□□□□ -0.38
VPS39-201ENST00000318006 MGARPQ8TDB4 240 aa12.69□□□□□ -0.38
VPS39-201ENST00000318006 B4DLN1 442 aa12.69□□□□□ -0.38
VPS39-201ENST00000318006 CD2BP2O95400 341 aaKnown RBP12.69□□□□□ -0.38
VPS39-201ENST00000318006 TROVE2P10155 538 aaKnown RBP eCLIP12.69□□□□□ -0.38
VPS39-201ENST00000318006 ADD1P35611 737 aaKnown RBP12.69□□□□□ -0.38
VPS39-201ENST00000318006 PPP2R5EQ16537 467 aa12.69□□□□□ -0.38
VPS39-201ENST00000318006 NUF2Q9BZD4 464 aa12.69□□□□□ -0.38
VPS39-201ENST00000318006 ARHGEF10LQ9HCE6 1279 aa12.69□□□□□ -0.38
VPS39-201ENST00000318006 FAM169AQ9Y6X4 670 aa12.69□□□□□ -0.38
VPS39-201ENST00000318006 SLC1A4P43007 532 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 IRX4P78413 519 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 PLS1Q14651 629 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 SLFNL1Q499Z3 407 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 HAUS3Q68CZ6 603 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 TTC19Q6DKK2 380 aaPredicted RBP12.68□□□□□ -0.38
VPS39-201ENST00000318006 C2CD5Q86YS7 1000 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 N4BP2L2Q92802 583 aaPredicted RBP12.68□□□□□ -0.38
VPS39-201ENST00000318006 TCHPQ9BT92 498 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 STK32BQ9NY57 414 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 ZBTB1Q9Y2K1 713 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 ADORA1P30542 326 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 PHKA1P46020 1223 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 ADCY7P51828 1080 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 CHRNDQ07001 517 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 CCDC105Q8IYK2 499 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 CCDC197Q8NCU1 140 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 MRRFQ96E11 262 aaKnown RBP12.68□□□□□ -0.38
VPS39-201ENST00000318006 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.68□□□□□ -0.38
VPS39-201ENST00000318006 INO80Q9ULG1 1556 aaPredicted RBP12.68□□□□□ -0.38
VPS39-201ENST00000318006 PLEKHA4Q9H4M7 779 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 ACTR5Q9H9F9 607 aaPredicted RBP12.68□□□□□ -0.38
VPS39-201ENST00000318006 LRWD1Q9UFC0 647 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 H0YIN7 160 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 KCTD16Q68DU8 428 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 RRAGAQ7L523 313 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 SLC35F6Q8N357 371 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 FANCBQ8NB91 859 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 EPN1Q9Y6I3 576 aaPredicted RBP12.68□□□□□ -0.38
VPS39-201ENST00000318006 ZMYM6O95789 1325 aa12.68□□□□□ -0.38
VPS39-201ENST00000318006 KCNJ18B7U540 433 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 I3L4J1 428 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 CUL4AQ13619 759 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 KCNJ12Q14500 433 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 NOSTRINQ8IVI9 506 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 SDR42E1Q8WUS8 393 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 ZSCAN10Q96SZ4 725 aaPredicted RBP12.67□□□□□ -0.38
VPS39-201ENST00000318006 PCDHA7Q9UN72 937 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 FRMD4BQ9Y2L6 1034 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 PPRC1Q5VV67 1664 aaKnown RBP12.67□□□□□ -0.38
VPS39-201ENST00000318006 CRKLP46109 303 aaKnown RBP12.67□□□□□ -0.38
VPS39-201ENST00000318006 PDE1CQ14123 709 aaPredicted RBP12.67□□□□□ -0.38
VPS39-201ENST00000318006 MFSD14BQ5SR56 506 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 TADA2BQ86TJ2 420 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 ZBTB21Q9ULJ3 1066 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 A0A1W2PQ27 194 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 A0A1W2PQ64 194 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 A0A1W2PQD8 194 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 PDIA3P30101 505 aaKnown RBP12.67□□□□□ -0.38
VPS39-201ENST00000318006 EPHB4P54760 987 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 POLA2Q14181 598 aa12.67□□□□□ -0.38
VPS39-201ENST00000318006 CCDC14Q49A88 953 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms