RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 CAMTA2O94983 1202 aa11.81□□□□□ -0.52
COL3A1-202ENST00000317840 IRX5P78411 483 aaPredicted RBP11.81□□□□□ -0.52
COL3A1-202ENST00000317840 DPYDQ12882 1025 aa11.81□□□□□ -0.52
COL3A1-202ENST00000317840 RSRC2Q7L4I2 434 aaKnown RBP11.81□□□□□ -0.52
COL3A1-202ENST00000317840 CSGALNACT2Q8N6G5 542 aa11.81□□□□□ -0.52
COL3A1-202ENST00000317840 TCP11L1Q9NUJ3 509 aa11.81□□□□□ -0.52
COL3A1-202ENST00000317840 RGPD5Q99666 1765 aa11.81□□□□□ -0.52
COL3A1-202ENST00000317840 LDHBP07195 334 aaKnown RBP11.8□□□□□ -0.52
COL3A1-202ENST00000317840 CALML3P27482 149 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 VSNL1P62760 191 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 ASIC1P78348 528 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 SF3B2Q13435 895 aaKnown RBP11.8□□□□□ -0.52
COL3A1-202ENST00000317840 CCDC96Q2M329 555 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 NT5DC1Q5TFE4 455 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 CTR9Q6PD62 1173 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 TRIM10Q9UDY6 481 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 TRPC5Q9UL62 973 aaPredicted RBP11.8□□□□□ -0.52
COL3A1-202ENST00000317840 CYLC1P35663 651 aaPredicted RBP11.8□□□□□ -0.52
COL3A1-202ENST00000317840 TRIM14Q14142 442 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 WHAMMP3Q1A5X7 153 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 CCDC181Q5TID7 509 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 ZNF34Q8IZ26 560 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 GJD4Q96KN9 370 aaPredicted RBP11.8□□□□□ -0.52
COL3A1-202ENST00000317840 RUFY1Q96T51 708 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 PNKPQ96T60 521 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 PSMB7Q99436 277 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 PPP1R3GB7ZBB8 358 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 SRGAP2O75044 1071 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 PARP1P09874 1014 aaKnown RBP11.8□□□□□ -0.52
COL3A1-202ENST00000317840 RAD51AP2Q09MP3 1159 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 CASP8Q14790 479 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 TCP11X2Q5H9J9 407 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 RASGRP2Q7LDG7 609 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 ADGRA1Q86SQ6 560 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 CDK5RAP3Q96JB5 506 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 ZC3H12CQ9C0D7 883 aaKnown RBP11.8□□□□□ -0.52
COL3A1-202ENST00000317840 HDAC6Q9UBN7 1215 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 TFR2Q9UP52 801 aa11.8□□□□□ -0.52
COL3A1-202ENST00000317840 NDUFA10O95299 355 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 IDEP14735 1019 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 FGFR2P21802 821 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 KRT83P78385 493 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 TUBB2AQ13885 445 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 FKBP15Q5T1M5 1219 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 ELOA2Q8IYF1 753 aaPredicted RBP11.79□□□□□ -0.52
COL3A1-202ENST00000317840 TUBB2BQ9BVA1 445 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 PHF20Q9BVI0 1012 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 EXOC1Q9NV70 894 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 SAR1BQ9Y6B6 198 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 PNPLA7Q6ZV29 1317 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 WNT7AO00755 349 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 N4BP1O75113 896 aaKnown RBP11.79□□□□□ -0.52
COL3A1-202ENST00000317840 ABL1P00519 1130 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 PRCPP42785 496 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 KIF5AQ12840 1032 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 INF2Q27J81 1249 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 TMTC3Q6ZXV5 915 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 MAPKAPK5Q8IW41 473 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 CCDC42Q96M95 316 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 RWDD2AQ9UIY3 292 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 PP2D1A8MPX8 630 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 H3BQF6 201 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 EIF6P56537 245 aaKnown RBP11.79□□□□□ -0.52
COL3A1-202ENST00000317840 TUBB4BP68371 445 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 ENOX2Q16206 610 aaKnown RBP11.79□□□□□ -0.52
COL3A1-202ENST00000317840 LETM2Q2VYF4 491 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 NOA1Q8NC60 698 aaKnown RBP11.79□□□□□ -0.52
COL3A1-202ENST00000317840 EXOC4Q96A65 974 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 JAKMIP2Q96AA8 810 aa11.79□□□□□ -0.52
COL3A1-202ENST00000317840 TTC26A0AVF1 554 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 B4DLN1 442 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 AKR1B10O60218 316 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 RPS6KA4O75676 772 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 SSBP05455 408 aaKnown RBP eCLIP11.78□□□□□ -0.52
COL3A1-202ENST00000317840 ERVK-24P63145 666 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 TFAP4Q01664 338 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 PDE4DQ08499 809 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 DIXDC1Q155Q3 683 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 DOK7Q18PE1 504 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 SOGA3Q5TF21 947 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 ZNF658Q5TYW1 1059 aaPredicted RBP11.78□□□□□ -0.52
COL3A1-202ENST00000317840 C3orf67Q6ZVT6 689 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 BLIDQ8IZY5 108 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 MINPP1Q9UNW1 487 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 H7C1D1 291 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 PKN1Q16512 942 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 SRBD1Q8N5C6 995 aaKnown RBP11.78□□□□□ -0.52
COL3A1-202ENST00000317840 ANKRD2Q9GZV1 360 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 FAM53CQ9NYF3 392 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 ABCC6O95255 1503 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 BAG3O95817 575 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 TSPY3P0CV98 308 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 TSPY8P0CW00 308 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 CYP2D6P10635 497 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 ATP2C1P98194 919 aaPredicted RBP11.78□□□□□ -0.52
COL3A1-202ENST00000317840 CYP27A1Q02318 531 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 CT47A1Q5JQC4 288 aaPredicted RBP11.78□□□□□ -0.52
COL3A1-202ENST00000317840 EHBP1Q8NDI1 1231 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 TSPYL1Q9H0U9 437 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 RABEP2Q9H5N1 569 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms