RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 MRFAP1L1Q96HT8 127 aa7.47□□□□□ -1.21
USP47-201ENST00000305481 SERPINA10Q9UK55 444 aa7.47□□□□□ -1.21
USP47-201ENST00000305481 MAN1B1Q9UKM7 699 aa7.47□□□□□ -1.21
USP47-201ENST00000305481 INF2Q27J81 1249 aa7.46□□□□□ -1.21
USP47-201ENST00000305481 CC2D2BQ6DHV5 1058 aa7.46□□□□□ -1.21
USP47-201ENST00000305481 GALNT17Q6IS24 598 aa7.46□□□□□ -1.21
USP47-201ENST00000305481 SH3RF1Q7Z6J0 888 aa7.46□□□□□ -1.21
USP47-201ENST00000305481 CCDC148Q8NFR7 591 aa7.46□□□□□ -1.21
USP47-201ENST00000305481 DHX58Q96C10 678 aa7.46□□□□□ -1.21
USP47-201ENST00000305481 RRP36Q96EU6 259 aaKnown RBP7.46□□□□□ -1.21
USP47-201ENST00000305481 PYCARDQ9ULZ3 195 aa7.46□□□□□ -1.21
USP47-201ENST00000305481 PPIP5K2O43314 1243 aa7.46□□□□□ -1.22
USP47-201ENST00000305481 OFD1O75665 1012 aa7.46□□□□□ -1.22
USP47-201ENST00000305481 SLFN14P0C7P3 912 aa7.46□□□□□ -1.22
USP47-201ENST00000305481 SIAH1Q8IUQ4 282 aa7.46□□□□□ -1.22
USP47-201ENST00000305481 PRMT6Q96LA8 375 aaPredicted RBP7.46□□□□□ -1.22
USP47-201ENST00000305481 TMEM60Q9H2L4 133 aa7.46□□□□□ -1.22
USP47-201ENST00000305481 TDRD3Q9H7E2 651 aaKnown RBP7.46□□□□□ -1.22
USP47-201ENST00000305481 SMCO2A6NFE2 343 aa7.46□□□□□ -1.22
USP47-201ENST00000305481 IKBKBO14920 756 aa7.46□□□□□ -1.22
USP47-201ENST00000305481 HLA-DOAP06340 250 aa7.46□□□□□ -1.22
USP47-201ENST00000305481 DPEP1P16444 411 aa7.46□□□□□ -1.22
USP47-201ENST00000305481 CASP1P29466 404 aa7.46□□□□□ -1.22
USP47-201ENST00000305481 NAPAP54920 295 aa7.46□□□□□ -1.22
USP47-201ENST00000305481 ZNF543Q08ER8 600 aa7.46□□□□□ -1.22
USP47-201ENST00000305481 LRMPQ12912 555 aa7.46□□□□□ -1.22
USP47-201ENST00000305481 MORC3Q14149 939 aa7.46□□□□□ -1.22
USP47-201ENST00000305481 E2F4Q16254 413 aa7.46□□□□□ -1.22
USP47-201ENST00000305481 ASPRV1Q53RT3 343 aa7.46□□□□□ -1.22
USP47-201ENST00000305481 TTBK2Q6IQ55 1244 aa7.46□□□□□ -1.22
USP47-201ENST00000305481 FAM177A1Q8N128 213 aaPredicted RBP7.46□□□□□ -1.22
USP47-201ENST00000305481 PAGE5Q96GU1 130 aa7.46□□□□□ -1.22
USP47-201ENST00000305481 DHX36Q9H2U1 1008 aaKnown RBP7.46□□□□□ -1.22
USP47-201ENST00000305481 PI4KBQ9UBF8 816 aa7.46□□□□□ -1.22
USP47-201ENST00000305481 CCDC194A0A1B0GVG4 234 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 PPP1R11O60927 126 aaPredicted RBP7.45□□□□□ -1.22
USP47-201ENST00000305481 NPM3O75607 178 aaKnown RBP7.45□□□□□ -1.22
USP47-201ENST00000305481 CDC25AP30304 524 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 JAG1P78504 1218 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 ARL6IP4Q66PJ3 421 aaKnown RBP7.45□□□□□ -1.22
USP47-201ENST00000305481 TATDN1Q6P1N9 297 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 DRC7Q8IY82 874 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 TTLL6Q8N841 843 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 KIAA1524Q8TCG1 905 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 MED15Q96RN5 788 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 MTRQ99707 1265 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 JMJD4Q9H9V9 463 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 GPCPD1Q9NPB8 672 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 GOLGA6L6A8MZA4 724 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 MPHOSPH10O00566 681 aaKnown RBP7.45□□□□□ -1.22
USP47-201ENST00000305481 EDIL3O43854 480 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 ATP1A3P13637 1013 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 ARID5BQ14865 1188 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 CFAP100Q494V2 611 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 KANK3Q6NY19 840 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 ADGRF4Q8IZF3 695 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 SUPT20HQ8NEM7 779 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 TPM3P06753 285 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 LMOD1P29536 600 aaPredicted RBP7.45□□□□□ -1.22
USP47-201ENST00000305481 AFMP43652 599 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 BAG6P46379 1132 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 FMR1Q06787 632 aaKnown RBP eCLIP7.45□□□□□ -1.22
USP47-201ENST00000305481 RRP1BQ14684 758 aaKnown RBP7.45□□□□□ -1.22
USP47-201ENST00000305481 PDXDC2PQ6P474 469 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 CACTINQ8WUQ7 758 aaKnown RBP7.45□□□□□ -1.22
USP47-201ENST00000305481 SMARCE1Q969G3 411 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 COA7Q96BR5 231 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 CCDC17Q96LX7 622 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 TMEM260Q9NX78 707 aa7.45□□□□□ -1.22
USP47-201ENST00000305481 SEC63Q9UGP8 760 aaKnown RBP7.45□□□□□ -1.22
USP47-201ENST00000305481 HOOK1Q9UJC3 728 aaKnown RBP7.45□□□□□ -1.22
USP47-201ENST00000305481 SMTNL1A8MU46 457 aa7.44□□□□□ -1.22
USP47-201ENST00000305481 SLC16A2P36021 539 aa7.44□□□□□ -1.22
USP47-201ENST00000305481 DPYDQ12882 1025 aa7.44□□□□□ -1.22
USP47-201ENST00000305481 NOLC1Q14978 699 aaKnown RBP eCLIP7.44□□□□□ -1.22
USP47-201ENST00000305481 KCTD1Q719H9 257 aa7.44□□□□□ -1.22
USP47-201ENST00000305481 ZSCAN29Q8IWY8 852 aaPredicted RBP7.44□□□□□ -1.22
USP47-201ENST00000305481 GMLQ99445 158 aa7.44□□□□□ -1.22
USP47-201ENST00000305481 PSMD1Q99460 953 aa7.44□□□□□ -1.22
USP47-201ENST00000305481 XPO4Q9C0E2 1151 aaKnown RBP7.44□□□□□ -1.22
USP47-201ENST00000305481 C6orf50Q9HD87 102 aa7.44□□□□□ -1.22
USP47-201ENST00000305481 ZNF277Q9NRM2 450 aaPredicted RBP7.44□□□□□ -1.22
USP47-201ENST00000305481 ATRNL1Q5VV63 1379 aa7.44□□□□□ -1.22
USP47-201ENST00000305481 MYH4Q9Y623 1939 aa7.44□□□□□ -1.22
USP47-201ENST00000305481 ESYT2A0FGR8 921 aa7.44□□□□□ -1.22
USP47-201ENST00000305481 EEF2P13639 858 aaKnown RBP7.44□□□□□ -1.22
USP47-201ENST00000305481 LONP1P36776 959 aaKnown RBP7.44□□□□□ -1.22
USP47-201ENST00000305481 ATP2B2Q01814 1243 aa7.44□□□□□ -1.22
USP47-201ENST00000305481 MYL5Q02045 173 aa7.44□□□□□ -1.22
USP47-201ENST00000305481 CERKLQ49MI3 558 aaPredicted RBP7.44□□□□□ -1.22
USP47-201ENST00000305481 CCDC93Q567U6 631 aa7.44□□□□□ -1.22
USP47-201ENST00000305481 RTKN2Q8IZC4 609 aa7.44□□□□□ -1.22
USP47-201ENST00000305481 CCDC12Q8WUD4 166 aaPredicted RBP7.44□□□□□ -1.22
USP47-201ENST00000305481 STAMQ92783 540 aa7.44□□□□□ -1.22
USP47-201ENST00000305481 MKL1Q969V6 931 aa7.44□□□□□ -1.22
USP47-201ENST00000305481 SPTLC3Q9NUV7 552 aa7.44□□□□□ -1.22
USP47-201ENST00000305481 FANCLQ9NW38 375 aa7.44□□□□□ -1.22
USP47-201ENST00000305481 IFNKQ9P0W0 207 aa7.44□□□□□ -1.22
USP47-201ENST00000305481 BIN2Q9UBW5 565 aaPredicted RBP7.44□□□□□ -1.22
USP47-201ENST00000305481 PSME4Q14997 1843 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms