RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 PDE6AP16499 860 aa14.15□□□□□ -0.14
COL3A1-201ENST00000304636 KCNA6P17658 529 aa14.15□□□□□ -0.14
COL3A1-201ENST00000304636 SH3BGRP55822 239 aaPredicted RBP14.15□□□□□ -0.14
COL3A1-201ENST00000304636 DBNLQ9UJU6 430 aaKnown RBP14.15□□□□□ -0.14
COL3A1-201ENST00000304636 TPD52P55327 224 aaPredicted RBP14.15□□□□□ -0.14
COL3A1-201ENST00000304636 ITIH3Q06033 890 aa14.15□□□□□ -0.14
COL3A1-201ENST00000304636 IFT88Q13099 833 aa14.15□□□□□ -0.14
COL3A1-201ENST00000304636 PHLDB3Q6NSJ2 640 aa14.15□□□□□ -0.14
COL3A1-201ENST00000304636 SDCCAG8Q86SQ7 713 aaPredicted RBP14.15□□□□□ -0.14
COL3A1-201ENST00000304636 GRK7Q8WTQ7 553 aa14.15□□□□□ -0.14
COL3A1-201ENST00000304636 FTOQ9C0B1 505 aaKnown RBP eCLIP14.15□□□□□ -0.14
COL3A1-201ENST00000304636 JRKLQ9Y4A0 524 aa14.15□□□□□ -0.14
COL3A1-201ENST00000304636 TNKSO95271 1327 aa14.15□□□□□ -0.14
COL3A1-201ENST00000304636 DDAH1O94760 285 aa14.15□□□□□ -0.14
COL3A1-201ENST00000304636 TBC1D8O95759 1140 aa14.15□□□□□ -0.14
COL3A1-201ENST00000304636 NECTIN1Q15223 517 aa14.15□□□□□ -0.14
COL3A1-201ENST00000304636 DPH5Q9H2P9 285 aa14.15□□□□□ -0.14
COL3A1-201ENST00000304636 RNF14Q9UBS8 474 aa14.15□□□□□ -0.14
COL3A1-201ENST00000304636 MBD5Q9P267 1494 aa14.15□□□□□ -0.15
COL3A1-201ENST00000304636 KCNQ3O43525 872 aa14.14□□□□□ -0.15
COL3A1-201ENST00000304636 FMNL1O95466 1100 aaPredicted RBP14.14□□□□□ -0.15
COL3A1-201ENST00000304636 CLTAP09496 248 aa14.14□□□□□ -0.15
COL3A1-201ENST00000304636 OR52Z1P0C646 297 aa14.14□□□□□ -0.15
COL3A1-201ENST00000304636 DDB1Q16531 1140 aa14.14□□□□□ -0.15
COL3A1-201ENST00000304636 GBP5Q96PP8 586 aa14.14□□□□□ -0.15
COL3A1-201ENST00000304636 A0A087WWV3 80 aa14.14□□□□□ -0.15
COL3A1-201ENST00000304636 SOWAHDA6NJG2 315 aa14.14□□□□□ -0.15
COL3A1-201ENST00000304636 POLR2FP61218 127 aaKnown RBP14.14□□□□□ -0.15
COL3A1-201ENST00000304636 ARMC9Q7Z3E5 817 aa14.14□□□□□ -0.15
COL3A1-201ENST00000304636 PLA2G4DQ86XP0 818 aa14.14□□□□□ -0.15
COL3A1-201ENST00000304636 CCDC197Q8NCU1 140 aa14.14□□□□□ -0.15
COL3A1-201ENST00000304636 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.14□□□□□ -0.15
COL3A1-201ENST00000304636 CUEDC2Q9H467 287 aa14.14□□□□□ -0.15
COL3A1-201ENST00000304636 VEZTQ9HBM0 779 aa14.14□□□□□ -0.15
COL3A1-201ENST00000304636 TCIRG1Q13488 830 aa14.14□□□□□ -0.15
COL3A1-201ENST00000304636 UBE3CQ15386 1083 aa14.14□□□□□ -0.15
COL3A1-201ENST00000304636 CNOT6LQ96LI5 555 aaKnown RBP14.14□□□□□ -0.15
COL3A1-201ENST00000304636 KRT12Q99456 494 aa14.14□□□□□ -0.15
COL3A1-201ENST00000304636 VPS37BQ9H9H4 285 aa14.14□□□□□ -0.15
COL3A1-201ENST00000304636 H2AFZP0C0S5 128 aa14.14□□□□□ -0.15
COL3A1-201ENST00000304636 TRAPPC10P48553 1259 aa14.14□□□□□ -0.15
COL3A1-201ENST00000304636 H2AFVQ71UI9 128 aa14.14□□□□□ -0.15
COL3A1-201ENST00000304636 TLR7Q9NYK1 1049 aaKnown RBP14.14□□□□□ -0.15
COL3A1-201ENST00000304636 ATP10AO60312 1499 aa14.14□□□□□ -0.15
COL3A1-201ENST00000304636 TRIM37O94972 964 aa14.13□□□□□ -0.15
COL3A1-201ENST00000304636 RAD51AP2Q09MP3 1159 aa14.13□□□□□ -0.15
COL3A1-201ENST00000304636 FAM47AQ5JRC9 791 aa14.13□□□□□ -0.15
COL3A1-201ENST00000304636 DHTKD1Q96HY7 919 aaPredicted RBP14.13□□□□□ -0.15
COL3A1-201ENST00000304636 ARMCX3Q9UH62 379 aaPredicted RBP14.13□□□□□ -0.15
COL3A1-201ENST00000304636 B4DLN1 442 aa14.13□□□□□ -0.15
COL3A1-201ENST00000304636 ARL1P40616 181 aaPredicted RBP14.13□□□□□ -0.15
COL3A1-201ENST00000304636 TECP42680 631 aa14.13□□□□□ -0.15
COL3A1-201ENST00000304636 ARHGAP44Q17R89 818 aa14.13□□□□□ -0.15
COL3A1-201ENST00000304636 ALS2CLQ60I27 953 aa14.13□□□□□ -0.15
COL3A1-201ENST00000304636 APOA5Q6Q788 366 aa14.13□□□□□ -0.15
COL3A1-201ENST00000304636 PPP1R21Q6ZMI0 780 aa14.13□□□□□ -0.15
COL3A1-201ENST00000304636 ABCB6Q9NP58 842 aa14.13□□□□□ -0.15
COL3A1-201ENST00000304636 SLFN14P0C7P3 912 aa14.13□□□□□ -0.15
COL3A1-201ENST00000304636 FNBP4Q8N3X1 1017 aaPredicted RBP14.13□□□□□ -0.15
COL3A1-201ENST00000304636 FAM114A2Q9NRY5 505 aa14.13□□□□□ -0.15
COL3A1-201ENST00000304636 CASQ2O14958 399 aaPredicted RBP14.13□□□□□ -0.15
COL3A1-201ENST00000304636 RASSF7Q02833 373 aa14.13□□□□□ -0.15
COL3A1-201ENST00000304636 EHHADHQ08426 723 aa14.13□□□□□ -0.15
COL3A1-201ENST00000304636 CCDC13Q8IYE1 715 aa14.13□□□□□ -0.15
COL3A1-201ENST00000304636 OGFOD1Q8N543 542 aa14.13□□□□□ -0.15
COL3A1-201ENST00000304636 NGLY1Q96IV0 654 aa14.13□□□□□ -0.15
COL3A1-201ENST00000304636 BZW2Q9Y6E2 419 aaKnown RBP14.13□□□□□ -0.15
COL3A1-201ENST00000304636 ABCB4P21439 1286 aa14.13□□□□□ -0.15
COL3A1-201ENST00000304636 BANK1Q8NDB2 785 aa14.13□□□□□ -0.15
COL3A1-201ENST00000304636 TBC1D31Q96DN5 1066 aa14.13□□□□□ -0.15
COL3A1-201ENST00000304636 TYW1Q9NV66 732 aaKnown RBP14.13□□□□□ -0.15
COL3A1-201ENST00000304636 RPAINQ86UA6 219 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 ACRBPQ8NEB7 543 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 PI4K2BQ8TCG2 481 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 DDX23Q9BUQ8 820 aaKnown RBP14.12□□□□□ -0.15
COL3A1-201ENST00000304636 BIN2Q9UBW5 565 aaPredicted RBP14.12□□□□□ -0.15
COL3A1-201ENST00000304636 SUN1O94901 812 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 HEXIM1O94992 359 aaKnown RBP14.12□□□□□ -0.15
COL3A1-201ENST00000304636 EIF6P56537 245 aaKnown RBP14.12□□□□□ -0.15
COL3A1-201ENST00000304636 ZNF658Q5TYW1 1059 aaPredicted RBP14.12□□□□□ -0.15
COL3A1-201ENST00000304636 GPBP1Q86WP2 473 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 RNF26Q9BY78 433 aaPredicted RBP14.12□□□□□ -0.15
COL3A1-201ENST00000304636 ATP8A2Q9NTI2 1148 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 RWDD2AQ9UIY3 292 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 MORC2Q9Y6X9 1032 aaPredicted RBP14.12□□□□□ -0.15
COL3A1-201ENST00000304636 LAD1O00515 517 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 PCP11498 1178 aaKnown RBP14.12□□□□□ -0.15
COL3A1-201ENST00000304636 MAGEA9P43362 315 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 TRIM68Q6AZZ1 485 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 NEK8Q86SG6 692 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 SMC1BQ8NDV3 1235 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 SH2D4AQ9H788 454 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 EPB41L5Q9HCM4 733 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 USTQ9Y2C2 406 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 PCDHB13Q9Y5F0 798 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 BACH1O14867 736 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 ZMYND10O75800 440 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 CIAO1O76071 339 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 CTSWP56202 376 aa14.12□□□□□ -0.15
COL3A1-201ENST00000304636 RUNDC3BQ96NL0 473 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms