RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 NYAP2Q9P242 653 aa16.32■□□□□ 0.2
C9orf3-202ENST00000297979 FBXO2Q9UK22 296 aaPredicted RBP16.32■□□□□ 0.2
C9orf3-202ENST00000297979 HPSEQ9Y251 543 aa16.32■□□□□ 0.2
C9orf3-202ENST00000297979 GOLGB1Q14789 3259 aaKnown RBP16.32■□□□□ 0.2
C9orf3-202ENST00000297979 LTBP3Q9NS15 1303 aa16.32■□□□□ 0.2
C9orf3-202ENST00000297979 FAM237AA0A1B0GTK4 181 aa16.32■□□□□ 0.2
C9orf3-202ENST00000297979 TRAPPC10P48553 1259 aa16.32■□□□□ 0.2
C9orf3-202ENST00000297979 FAM151AQ8WW52 585 aa16.32■□□□□ 0.2
C9orf3-202ENST00000297979 UBA5Q9GZZ9 404 aa16.32■□□□□ 0.2
C9orf3-202ENST00000297979 ZNF202O95125 648 aa16.32■□□□□ 0.2
C9orf3-202ENST00000297979 TNIP1Q15025 636 aa16.32■□□□□ 0.2
C9orf3-202ENST00000297979 ABCB5Q2M3G0 1257 aa16.32■□□□□ 0.2
C9orf3-202ENST00000297979 TTC38Q5R3I4 469 aa16.32■□□□□ 0.2
C9orf3-202ENST00000297979 HERC5Q9UII4 1024 aaKnown RBP16.32■□□□□ 0.2
C9orf3-202ENST00000297979 EEF2P13639 858 aaKnown RBP16.31■□□□□ 0.2
C9orf3-202ENST00000297979 SYKP43405 635 aa16.31■□□□□ 0.2
C9orf3-202ENST00000297979 SHROOM1Q2M3G4 852 aaPredicted RBP16.31■□□□□ 0.2
C9orf3-202ENST00000297979 GPATCH4Q5T3I0 446 aaKnown RBP16.31■□□□□ 0.2
C9orf3-202ENST00000297979 FKBP1CQ5VVH2 108 aa16.31■□□□□ 0.2
C9orf3-202ENST00000297979 MKL1Q969V6 931 aa16.31■□□□□ 0.2
C9orf3-202ENST00000297979 PIGSQ96S52 555 aa16.31■□□□□ 0.2
C9orf3-202ENST00000297979 PPP1R9BQ96SB3 815 aa16.31■□□□□ 0.2
C9orf3-202ENST00000297979 PLCD4Q9BRC7 762 aa16.31■□□□□ 0.2
C9orf3-202ENST00000297979 SDF4Q9BRK5 362 aa16.31■□□□□ 0.2
C9orf3-202ENST00000297979 VAT1LQ9HCJ6 419 aa16.31■□□□□ 0.2
C9orf3-202ENST00000297979 CNTNAP1P78357 1384 aa16.31■□□□□ 0.2
C9orf3-202ENST00000297979 ADAMTS3O15072 1205 aa16.31■□□□□ 0.2
C9orf3-202ENST00000297979 MYO1BO43795 1136 aa16.31■□□□□ 0.2
C9orf3-202ENST00000297979 GDF11O95390 407 aa16.31■□□□□ 0.2
C9orf3-202ENST00000297979 NAPAP54920 295 aa16.31■□□□□ 0.2
C9orf3-202ENST00000297979 SEPT2Q15019 361 aa16.31■□□□□ 0.2
C9orf3-202ENST00000297979 PRDM16Q9HAZ2 1276 aa16.31■□□□□ 0.2
C9orf3-202ENST00000297979 GPCPD1Q9NPB8 672 aa16.31■□□□□ 0.2
C9orf3-202ENST00000297979 SRPRBQ9Y5M8 271 aaKnown RBP16.31■□□□□ 0.2
C9orf3-202ENST00000297979 hCG_1984214I3L0E3 225 aa16.3■□□□□ 0.2
C9orf3-202ENST00000297979 M0R2N6 131 aa16.3■□□□□ 0.2
C9orf3-202ENST00000297979 ICA1Q05084 483 aa16.3■□□□□ 0.2
C9orf3-202ENST00000297979 CCDC96Q2M329 555 aa16.3■□□□□ 0.2
C9orf3-202ENST00000297979 ZNF713Q8N859 430 aaPredicted RBP16.3■□□□□ 0.2
C9orf3-202ENST00000297979 ZNF579Q8NAF0 562 aaKnown RBP16.3■□□□□ 0.2
C9orf3-202ENST00000297979 ZBED3Q96IU2 234 aaPredicted RBP16.3■□□□□ 0.2
C9orf3-202ENST00000297979 TIGD1Q96MW7 591 aa16.3■□□□□ 0.2
C9orf3-202ENST00000297979 VEZTQ9HBM0 779 aa16.3■□□□□ 0.2
C9orf3-202ENST00000297979 ARFGEF1Q9Y6D6 1849 aa16.3■□□□□ 0.2
C9orf3-202ENST00000297979 RBM26Q5T8P6 1007 aaKnown RBP16.3■□□□□ 0.2
C9orf3-202ENST00000297979 ZMYND12Q9H0C1 365 aa16.3■□□□□ 0.2
C9orf3-202ENST00000297979 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.3■□□□□ 0.28e-8■■■■■ 32.8
C9orf3-202ENST00000297979 WNT7AO00755 349 aa16.29■□□□□ 0.2
C9orf3-202ENST00000297979 MMP14P50281 582 aa16.29■□□□□ 0.2
C9orf3-202ENST00000297979 ANO6Q4KMQ2 910 aa16.29■□□□□ 0.2
C9orf3-202ENST00000297979 FAM200AQ8TCP9 573 aa16.29■□□□□ 0.2
C9orf3-202ENST00000297979 CCDC194A0A1B0GVG4 234 aa16.29■□□□□ 0.2
C9orf3-202ENST00000297979 MYOZ2Q9NPC6 264 aa16.29■□□□□ 0.2
C9orf3-202ENST00000297979 FAM13BQ9NYF5 915 aa16.29■□□□□ 0.2
C9orf3-202ENST00000297979 PCDHA6Q9UN73 950 aa16.29■□□□□ 0.2
C9orf3-202ENST00000297979 PCDHA8Q9Y5H6 950 aa16.29■□□□□ 0.2
C9orf3-202ENST00000297979 RPS12P25398 132 aaKnown RBP16.28■□□□□ 0.2
C9orf3-202ENST00000297979 RASSF7Q02833 373 aa16.28■□□□□ 0.2
C9orf3-202ENST00000297979 GRIN1Q05586 938 aa16.28■□□□□ 0.2
C9orf3-202ENST00000297979 ZNF174Q15697 407 aa16.28■□□□□ 0.2
C9orf3-202ENST00000297979 FAM83AQ86UY5 434 aa16.28■□□□□ 0.2
C9orf3-202ENST00000297979 RASGRP4Q8TDF6 673 aa16.28■□□□□ 0.2
C9orf3-202ENST00000297979 DCAF4Q8WV16 495 aa16.28■□□□□ 0.2
C9orf3-202ENST00000297979 C6orf50Q9HD87 102 aa16.28■□□□□ 0.2
C9orf3-202ENST00000297979 KCNH3Q9ULD8 1083 aa16.28■□□□□ 0.2
C9orf3-202ENST00000297979 GH2P01242 217 aa16.28■□□□□ 0.2
C9orf3-202ENST00000297979 GNA11P29992 359 aa16.28■□□□□ 0.2
C9orf3-202ENST00000297979 STX1AQ16623 288 aa16.28■□□□□ 0.2
C9orf3-202ENST00000297979 FERMT2Q96AC1 680 aa16.28■□□□□ 0.2
C9orf3-202ENST00000297979 ESYT2A0FGR8 921 aa16.27■□□□□ 0.2
C9orf3-202ENST00000297979 WNT10BO00744 389 aa16.27■□□□□ 0.2
C9orf3-202ENST00000297979 CAVIN2O95810 425 aa16.27■□□□□ 0.2
C9orf3-202ENST00000297979 SIAH1Q8IUQ4 282 aa16.27■□□□□ 0.2
C9orf3-202ENST00000297979 ADGRF4Q8IZF3 695 aa16.27■□□□□ 0.2
C9orf3-202ENST00000297979 NLGN2Q8NFZ4 835 aa16.27■□□□□ 0.2
C9orf3-202ENST00000297979 ZNF526Q8TF50 670 aaPredicted RBP16.27■□□□□ 0.2
C9orf3-202ENST00000297979 SMCO2A6NFE2 343 aa16.27■□□□□ 0.2
C9orf3-202ENST00000297979 ZNF280AP59817 542 aaPredicted RBP16.27■□□□□ 0.2
C9orf3-202ENST00000297979 FAM193AP78312 1265 aa16.27■□□□□ 0.2
C9orf3-202ENST00000297979 ATP2C1P98194 919 aaPredicted RBP16.27■□□□□ 0.2
C9orf3-202ENST00000297979 RRP1BQ14684 758 aaKnown RBP16.27■□□□□ 0.2
C9orf3-202ENST00000297979 SPECC1Q5M775 1068 aa16.27■□□□□ 0.2
C9orf3-202ENST00000297979 SLFN13Q68D06 897 aa16.27■□□□□ 0.2
C9orf3-202ENST00000297979 TTBK2Q6IQ55 1244 aa16.27■□□□□ 0.2
C9orf3-202ENST00000297979 KCTD1Q719H9 257 aa16.27■□□□□ 0.2
C9orf3-202ENST00000297979 PDLIM2Q96JY6 352 aa16.27■□□□□ 0.2
C9orf3-202ENST00000297979 JMJD4Q9H9V9 463 aa16.27■□□□□ 0.2
C9orf3-202ENST00000297979 SLC1A4P43007 532 aa16.27■□□□□ 0.19
C9orf3-202ENST00000297979 NBPF9Q3BBW0 867 aa16.27■□□□□ 0.19
C9orf3-202ENST00000297979 TMEM39BQ9GZU3 492 aa16.27■□□□□ 0.19
C9orf3-202ENST00000297979 CSRNP2Q9H175 543 aa16.27■□□□□ 0.19
C9orf3-202ENST00000297979 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.26■□□□□ 0.19
C9orf3-202ENST00000297979 PNMA6FA0A0J9YX94 578 aa16.26■□□□□ 0.19
C9orf3-202ENST00000297979 SHTN1A0MZ66 631 aa16.26■□□□□ 0.19
C9orf3-202ENST00000297979 RAD21O60216 631 aa16.26■□□□□ 0.19
C9orf3-202ENST00000297979 JAG1P78504 1218 aa16.26■□□□□ 0.19
C9orf3-202ENST00000297979 PTGDRQ13258 359 aa16.26■□□□□ 0.19
C9orf3-202ENST00000297979 GMCL1P1Q8NEA9 526 aa16.26■□□□□ 0.19
C9orf3-202ENST00000297979 DNAJC25Q9H1X3 360 aa16.26■□□□□ 0.19
C9orf3-202ENST00000297979 KIAA1468Q9P260 1216 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms