RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 SAMSN1Q9NSI8 373 aaKnown RBP27.17■■□□□ 1.94
TRIM54-201ENST00000296098 F8W031 263 aaPredicted RBP27.17■■□□□ 1.94
TRIM54-201ENST00000296098 SMARCA1P28370 1054 aa27.17■■□□□ 1.94
TRIM54-201ENST00000296098 SPATA1Q5VX52 437 aa27.17■■□□□ 1.94
TRIM54-201ENST00000296098 MTERF4Q7Z6M4 381 aaKnown RBP27.17■■□□□ 1.94
TRIM54-201ENST00000296098 CERS5Q8N5B7 392 aa27.17■■□□□ 1.94
TRIM54-201ENST00000296098 ZMYND12Q9H0C1 365 aa27.17■■□□□ 1.94
TRIM54-201ENST00000296098 CPVLQ9H3G5 476 aa27.17■■□□□ 1.94
TRIM54-201ENST00000296098 KIF2AO00139 706 aaPredicted RBP27.16■■□□□ 1.94
TRIM54-201ENST00000296098 GTPBP6O43824 516 aaPredicted RBP27.16■■□□□ 1.94
TRIM54-201ENST00000296098 KLHL10Q6JEL2 608 aa27.16■■□□□ 1.94
TRIM54-201ENST00000296098 COL23A1Q86Y22 540 aaPredicted RBP27.16■■□□□ 1.94
TRIM54-201ENST00000296098 ZNF592Q92610 1267 aa27.16■■□□□ 1.94
TRIM54-201ENST00000296098 STAMQ92783 540 aa27.16■■□□□ 1.94
TRIM54-201ENST00000296098 PDCL3Q9H2J4 239 aa27.16■■□□□ 1.94
TRIM54-201ENST00000296098 SEC63Q9UGP8 760 aaKnown RBP27.16■■□□□ 1.94
TRIM54-201ENST00000296098 CTIFO43310 598 aaKnown RBP27.16■■□□□ 1.94
TRIM54-201ENST00000296098 DPP8Q6V1X1 898 aaPredicted RBP27.16■■□□□ 1.94
TRIM54-201ENST00000296098 DTHD1Q6ZMT9 781 aa27.16■■□□□ 1.94
TRIM54-201ENST00000296098 AKT1S1Q96B36 256 aa27.16■■□□□ 1.94
TRIM54-201ENST00000296098 PPP1R13BQ96KQ4 1090 aa27.16■■□□□ 1.94
TRIM54-201ENST00000296098 TTF2Q9UNY4 1162 aaKnown RBP27.16■■□□□ 1.94
TRIM54-201ENST00000296098 ADAMTSL1Q8N6G6 1762 aa27.15■■□□□ 1.94
TRIM54-201ENST00000296098 GABPAQ06546 454 aa27.15■■□□□ 1.94
TRIM54-201ENST00000296098 KRT25Q7Z3Z0 450 aa27.15■■□□□ 1.94
TRIM54-201ENST00000296098 HOMER1Q86YM7 354 aa27.15■■□□□ 1.94
TRIM54-201ENST00000296098 BLZF1Q9H2G9 400 aa27.15■■□□□ 1.94
TRIM54-201ENST00000296098 LAD1O00515 517 aa27.14■■□□□ 1.94
TRIM54-201ENST00000296098 ALDH1B1P30837 517 aa27.14■■□□□ 1.94
TRIM54-201ENST00000296098 PTPN21Q16825 1174 aa27.14■■□□□ 1.94
TRIM54-201ENST00000296098 TMX1Q9H3N1 280 aa27.14■■□□□ 1.94
TRIM54-201ENST00000296098 C6orf50Q9HD87 102 aa27.14■■□□□ 1.94
TRIM54-201ENST00000296098 PPP1R3GB7ZBB8 358 aa27.14■■□□□ 1.93
TRIM54-201ENST00000296098 PDE6BP35913 854 aa27.14■■□□□ 1.93
TRIM54-201ENST00000296098 STAT6P42226 847 aa27.14■■□□□ 1.93
TRIM54-201ENST00000296098 TBX2Q13207 712 aaPredicted RBP27.14■■□□□ 1.93
TRIM54-201ENST00000296098 SPECC1LQ69YQ0 1117 aa27.14■■□□□ 1.93
TRIM54-201ENST00000296098 SMYD4Q8IYR2 804 aaPredicted RBP27.14■■□□□ 1.93
TRIM54-201ENST00000296098 MTRQ99707 1265 aa27.13■■□□□ 1.93
TRIM54-201ENST00000296098 TMEM60Q9H2L4 133 aa27.13■■□□□ 1.93
TRIM54-201ENST00000296098 DISC1Q9NRI5 854 aa27.13■■□□□ 1.93
TRIM54-201ENST00000296098 MTMR4Q9NYA4 1195 aa27.13■■□□□ 1.93
TRIM54-201ENST00000296098 USP17L5A8MUK1 530 aa27.12■■□□□ 1.93
TRIM54-201ENST00000296098 CCP110O43303 1012 aa27.12■■□□□ 1.93
TRIM54-201ENST00000296098 GNA11P29992 359 aa27.12■■□□□ 1.93
TRIM54-201ENST00000296098 PRPHP41219 470 aa27.12■■□□□ 1.93
TRIM54-201ENST00000296098 STX17P56962 302 aa27.12■■□□□ 1.93
TRIM54-201ENST00000296098 KARSQ15046 597 aaKnown RBP27.12■■□□□ 1.93
TRIM54-201ENST00000296098 DOK7Q18PE1 504 aa27.12■■□□□ 1.93
TRIM54-201ENST00000296098 ZNF710Q8N1W2 664 aa27.12■■□□□ 1.93
TRIM54-201ENST00000296098 DDX4Q9NQI0 724 aaKnown RBP27.12■■□□□ 1.93
TRIM54-201ENST00000296098 A0A1B0GTH6 734 aa27.12■■□□□ 1.93
TRIM54-201ENST00000296098 NONOQ15233 471 aaKnown RBP eCLIP27.12■■□□□ 1.93
TRIM54-201ENST00000296098 SOGA3Q5TF21 947 aa27.12■■□□□ 1.93
TRIM54-201ENST00000296098 PIGSQ96S52 555 aa27.12■■□□□ 1.93
TRIM54-201ENST00000296098 TMX4Q9H1E5 349 aaPredicted RBP27.12■■□□□ 1.93
TRIM54-201ENST00000296098 RMND1Q9NWS8 449 aa27.12■■□□□ 1.93
TRIM54-201ENST00000296098 CTNND2Q9UQB3 1225 aa27.12■■□□□ 1.93
TRIM54-201ENST00000296098 C10orf71Q711Q0 1435 aa27.11■■□□□ 1.93
TRIM54-201ENST00000296098 SMCO2A6NFE2 343 aa27.11■■□□□ 1.93
TRIM54-201ENST00000296098 PDHBP11177 359 aa27.11■■□□□ 1.93
TRIM54-201ENST00000296098 CDC25AP30304 524 aa27.11■■□□□ 1.93
TRIM54-201ENST00000296098 CDKAL1Q5VV42 579 aa27.11■■□□□ 1.93
TRIM54-201ENST00000296098 MYO3BQ8WXR4 1341 aa27.11■■□□□ 1.93
TRIM54-201ENST00000296098 PLSCR1O15162 318 aa27.11■■□□□ 1.93
TRIM54-201ENST00000296098 AKR1B1P15121 316 aa27.11■■□□□ 1.93
TRIM54-201ENST00000296098 GOLGA8FQ08AF8 430 aa27.11■■□□□ 1.93
TRIM54-201ENST00000296098 GOLGA8DPQ0D2H9 430 aa27.11■■□□□ 1.93
TRIM54-201ENST00000296098 MASTLQ96GX5 879 aa27.11■■□□□ 1.93
TRIM54-201ENST00000296098 MXD3Q9BW11 206 aa27.11■■□□□ 1.93
TRIM54-201ENST00000296098 USP40Q9NVE5 1235 aa27.11■■□□□ 1.93
TRIM54-201ENST00000296098 SWAP70Q9UH65 585 aa27.11■■□□□ 1.93
TRIM54-201ENST00000296098 PARP3Q9Y6F1 533 aa27.11■■□□□ 1.93
TRIM54-201ENST00000296098 IGKV6D-41A0A0C4DH26 115 aa27.1■■□□□ 1.93
TRIM54-201ENST00000296098 hCG_1984214I3L0E3 225 aa27.1■■□□□ 1.93
TRIM54-201ENST00000296098 MMP10P09238 476 aa27.1■■□□□ 1.93
TRIM54-201ENST00000296098 NR1I3Q14994 352 aa27.1■■□□□ 1.93
TRIM54-201ENST00000296098 ASPRV1Q53RT3 343 aa27.1■■□□□ 1.93
TRIM54-201ENST00000296098 ZNF713Q8N859 430 aaPredicted RBP27.1■■□□□ 1.93
TRIM54-201ENST00000296098 RASSF8Q8NHQ8 419 aa27.1■■□□□ 1.93
TRIM54-201ENST00000296098 KIF18AQ8NI77 898 aa27.1■■□□□ 1.93
TRIM54-201ENST00000296098 RIOX1Q9H6W3 641 aa27.1■■□□□ 1.93
TRIM54-201ENST00000296098 VAT1LQ9HCJ6 419 aa27.1■■□□□ 1.93
TRIM54-201ENST00000296098 ESYT2A0FGR8 921 aa27.09■■□□□ 1.93
TRIM54-201ENST00000296098 G3V3G9 751 aa27.09■■□□□ 1.93
TRIM54-201ENST00000296098 RPN1P04843 607 aaKnown RBP27.09■■□□□ 1.93
TRIM54-201ENST00000296098 SCNN1DP51172 638 aa27.09■■□□□ 1.93
TRIM54-201ENST00000296098 DCAF8Q5TAQ9 597 aa27.09■■□□□ 1.93
TRIM54-201ENST00000296098 RRAGBQ5VZM2 374 aa27.09■■□□□ 1.93
TRIM54-201ENST00000296098 FLAD1Q8NFF5 587 aa27.09■■□□□ 1.93
TRIM54-201ENST00000296098 SERPINB13Q9UIV8 391 aa27.09■■□□□ 1.93
TRIM54-201ENST00000296098 FRMPD2Q68DX3 1309 aaPredicted RBP27.09■■□□□ 1.93
TRIM54-201ENST00000296098 HHIPL2Q6UWX4 724 aa27.09■■□□□ 1.93
TRIM54-201ENST00000296098 APTXQ7Z2E3 356 aaKnown RBP27.09■■□□□ 1.93
TRIM54-201ENST00000296098 FCHSD1Q86WN1 690 aa27.09■■□□□ 1.93
TRIM54-201ENST00000296098 LRRC47Q8N1G4 583 aaKnown RBP27.09■■□□□ 1.93
TRIM54-201ENST00000296098 PP2D1A8MPX8 630 aa27.08■■□□□ 1.93
TRIM54-201ENST00000296098 UBA7P41226 1012 aa27.08■■□□□ 1.93
TRIM54-201ENST00000296098 ZNF658Q5TYW1 1059 aaPredicted RBP27.08■■□□□ 1.93
TRIM54-201ENST00000296098 TMEM139Q8IV31 216 aa27.08■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms