RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 CERS3Q8IU89 383 aa13.05□□□□□ -0.32
CUX1-202ENST00000292538 CCDC148Q8NFR7 591 aa13.05□□□□□ -0.32
CUX1-202ENST00000292538 FERMT2Q96AC1 680 aa13.05□□□□□ -0.32
CUX1-202ENST00000292538 CCDC34Q96HJ3 373 aa13.05□□□□□ -0.32
CUX1-202ENST00000292538 DDTLA6NHG4 134 aaPredicted RBP13.04□□□□□ -0.32
CUX1-202ENST00000292538 PDHBP11177 359 aa13.04□□□□□ -0.32
CUX1-202ENST00000292538 ATP2C1P98194 919 aaPredicted RBP13.04□□□□□ -0.32
CUX1-202ENST00000292538 SARM1Q6SZW1 724 aa13.04□□□□□ -0.32
CUX1-202ENST00000292538 DTHD1Q6ZMT9 781 aa13.04□□□□□ -0.32
CUX1-202ENST00000292538 PODNQ7Z5L7 613 aa13.04□□□□□ -0.32
CUX1-202ENST00000292538 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.04□□□□□ -0.32
CUX1-202ENST00000292538 MRFAP1L1Q96HT8 127 aa13.04□□□□□ -0.32
CUX1-202ENST00000292538 TCP11L1Q9NUJ3 509 aa13.04□□□□□ -0.32
CUX1-202ENST00000292538 TMEM232C9JQI7 657 aa13.04□□□□□ -0.32
CUX1-202ENST00000292538 ZNF579Q8NAF0 562 aaKnown RBP13.04□□□□□ -0.32
CUX1-202ENST00000292538 EEF2KMTQ96G04 330 aa13.04□□□□□ -0.32
CUX1-202ENST00000292538 SAMSN1Q9NSI8 373 aaKnown RBP13.04□□□□□ -0.32
CUX1-202ENST00000292538 UBR3Q6ZT12 1888 aa13.04□□□□□ -0.32
CUX1-202ENST00000292538 TCP10L2B9ZVM9 353 aa13.03□□□□□ -0.32
CUX1-202ENST00000292538 TTLL1O95922 423 aa13.03□□□□□ -0.32
CUX1-202ENST00000292538 RGS22Q8NE09 1264 aa13.03□□□□□ -0.32
CUX1-202ENST00000292538 ZBTB12Q9Y330 459 aaPredicted RBP13.03□□□□□ -0.32
CUX1-202ENST00000292538 CASZ1Q86V15 1759 aa13.03□□□□□ -0.32
CUX1-202ENST00000292538 BRWD3Q6RI45 1802 aa13.03□□□□□ -0.32
CUX1-202ENST00000292538 SLFN14P0C7P3 912 aa13.03□□□□□ -0.32
CUX1-202ENST00000292538 TXLNAP40222 546 aa13.03□□□□□ -0.32
CUX1-202ENST00000292538 UBA7P41226 1012 aa13.03□□□□□ -0.32
CUX1-202ENST00000292538 STAT6P42226 847 aa13.03□□□□□ -0.32
CUX1-202ENST00000292538 TECP42680 631 aa13.03□□□□□ -0.32
CUX1-202ENST00000292538 TNNI2P48788 182 aa13.03□□□□□ -0.32
CUX1-202ENST00000292538 UBE2SQ16763 222 aa13.03□□□□□ -0.32
CUX1-202ENST00000292538 ANKS1AQ92625 1134 aa13.03□□□□□ -0.32
CUX1-202ENST00000292538 C6orf50Q9HD87 102 aa13.03□□□□□ -0.32
CUX1-202ENST00000292538 ZNF277Q9NRM2 450 aaPredicted RBP13.03□□□□□ -0.32
CUX1-202ENST00000292538 BMP15O95972 392 aa13.02□□□□□ -0.32
CUX1-202ENST00000292538 SHMT1P34896 483 aa13.02□□□□□ -0.32
CUX1-202ENST00000292538 CUL4BQ13620 913 aa13.02□□□□□ -0.32
CUX1-202ENST00000292538 KANK3Q6NY19 840 aa13.02□□□□□ -0.32
CUX1-202ENST00000292538 SPICE1Q8N0Z3 855 aa13.02□□□□□ -0.32
CUX1-202ENST00000292538 IQUBQ8NA54 791 aa13.02□□□□□ -0.32
CUX1-202ENST00000292538 TBCKQ8TEA7 893 aa13.02□□□□□ -0.32
CUX1-202ENST00000292538 GJA10Q969M2 543 aa13.02□□□□□ -0.32
CUX1-202ENST00000292538 NUP88Q99567 741 aaPredicted RBP13.02□□□□□ -0.32
CUX1-202ENST00000292538 A0A1B0GUL6 1792 aa13.02□□□□□ -0.32
CUX1-202ENST00000292538 FAM237AA0A1B0GTK4 181 aa13.02□□□□□ -0.33
CUX1-202ENST00000292538 USP27XA6NNY8 438 aa13.02□□□□□ -0.33
CUX1-202ENST00000292538 MARCH6O60337 910 aa13.02□□□□□ -0.33
CUX1-202ENST00000292538 TXKP42681 527 aa13.02□□□□□ -0.33
CUX1-202ENST00000292538 SF3B2Q13435 895 aaKnown RBP13.02□□□□□ -0.33
CUX1-202ENST00000292538 CERKLQ49MI3 558 aaPredicted RBP13.02□□□□□ -0.33
CUX1-202ENST00000292538 CNKSR1Q969H4 720 aa13.02□□□□□ -0.33
CUX1-202ENST00000292538 ROBO3Q96MS0 1386 aa13.02□□□□□ -0.33
CUX1-202ENST00000292538 SNED1Q8TER0 1413 aa13.02□□□□□ -0.33
CUX1-202ENST00000292538 PES1O00541 588 aaKnown RBP13.02□□□□□ -0.33
CUX1-202ENST00000292538 RRAGBQ5VZM2 374 aa13.02□□□□□ -0.33
CUX1-202ENST00000292538 HSD3B7Q9H2F3 369 aa13.02□□□□□ -0.33
CUX1-202ENST00000292538 USP17L10C9JJH3 530 aa13.01□□□□□ -0.33
CUX1-202ENST00000292538 TAL1P17542 331 aaPredicted RBP13.01□□□□□ -0.33
CUX1-202ENST00000292538 SFPQP23246 707 aaKnown RBP eCLIP13.01□□□□□ -0.331e-6■■■■□ 20.4
CUX1-202ENST00000292538 GNA11P29992 359 aa13.01□□□□□ -0.33
CUX1-202ENST00000292538 SEPT2Q15019 361 aa13.01□□□□□ -0.33
CUX1-202ENST00000292538 NONOQ15233 471 aaKnown RBP eCLIP13.01□□□□□ -0.331e-6■■■□□ 18.5
CUX1-202ENST00000292538 ADGRF4Q8IZF3 695 aa13.01□□□□□ -0.33
CUX1-202ENST00000292538 REXO1Q8N1G1 1221 aaKnown RBP13.01□□□□□ -0.33
CUX1-202ENST00000292538 CPLX3Q8WVH0 158 aa13.01□□□□□ -0.33
CUX1-202ENST00000292538 VEZTQ9HBM0 779 aa13.01□□□□□ -0.33
CUX1-202ENST00000292538 CD44P16070 742 aaKnown RBP13.01□□□□□ -0.33
CUX1-202ENST00000292538 HMGB2P26583 209 aaKnown RBP13.01□□□□□ -0.33
CUX1-202ENST00000292538 SLC1A4P43007 532 aa13.01□□□□□ -0.33
CUX1-202ENST00000292538 GABPAQ06546 454 aa13.01□□□□□ -0.33
CUX1-202ENST00000292538 DACT2Q5SW24 774 aa13.01□□□□□ -0.33
CUX1-202ENST00000292538 STRIP1Q5VSL9 837 aa13.01□□□□□ -0.33
CUX1-202ENST00000292538 LARGE2Q8N3Y3 721 aa13.01□□□□□ -0.33
CUX1-202ENST00000292538 CCDC12Q8WUD4 166 aaPredicted RBP13.01□□□□□ -0.33
CUX1-202ENST00000292538 PRMT6Q96LA8 375 aaPredicted RBP13.01□□□□□ -0.33
CUX1-202ENST00000292538 BPIFA3Q9BQP9 254 aa13.01□□□□□ -0.33
CUX1-202ENST00000292538 LZTS2Q9BRK4 669 aa13.01□□□□□ -0.33
CUX1-202ENST00000292538 CTNND2Q9UQB3 1225 aa13.01□□□□□ -0.33
CUX1-202ENST00000292538 EEF2P13639 858 aaKnown RBP13□□□□□ -0.33
CUX1-202ENST00000292538 MORC3Q14149 939 aa13□□□□□ -0.33
CUX1-202ENST00000292538 HHIPL2Q6UWX4 724 aa13□□□□□ -0.33
CUX1-202ENST00000292538 SPZ1Q9BXG8 430 aa13□□□□□ -0.33
CUX1-202ENST00000292538 SH3GLB2Q9NR46 395 aa13□□□□□ -0.33
CUX1-202ENST00000292538 RGS17Q9UGC6 210 aaPredicted RBP13□□□□□ -0.33
CUX1-202ENST00000292538 IKBKBO14920 756 aa13□□□□□ -0.33
CUX1-202ENST00000292538 TNNT1P13805 278 aa13□□□□□ -0.33
CUX1-202ENST00000292538 CDC25BP30305 580 aa13□□□□□ -0.33
CUX1-202ENST00000292538 TRAPPC10P48553 1259 aa13□□□□□ -0.33
CUX1-202ENST00000292538 ZYXQ15942 572 aaKnown RBP13□□□□□ -0.33
CUX1-202ENST00000292538 MLKLQ8NB16 471 aa13□□□□□ -0.33
CUX1-202ENST00000292538 DNAJC18Q9H819 358 aa13□□□□□ -0.33
CUX1-202ENST00000292538 FAM198AQ9UFP1 575 aa13□□□□□ -0.33
CUX1-202ENST00000292538 DACH1Q9UI36 760 aa13□□□□□ -0.33
CUX1-202ENST00000292538 SUGT1Q9Y2Z0 365 aa13□□□□□ -0.33
CUX1-202ENST00000292538 CCDC88AQ3V6T2 1871 aa13□□□□□ -0.33
CUX1-202ENST00000292538 NEMFO60524 1076 aa12.99□□□□□ -0.33
CUX1-202ENST00000292538 USH1GQ495M9 461 aa12.99□□□□□ -0.33
CUX1-202ENST00000292538 RBM26Q5T8P6 1007 aaKnown RBP12.99□□□□□ -0.33
CUX1-202ENST00000292538 POTEDQ86YR6 584 aa12.99□□□□□ -0.33
CUX1-202ENST00000292538 ZDHHC15Q96MV8 337 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms