RNA–Protein interactions for RNA: ENST00000285116.7

SKA1-201, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SKA1, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-201ENST00000285116 TEX2Q8IWB9 1127 aa11.68□□□□□ -0.54
SKA1-201ENST00000285116 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.68□□□□□ -0.54
SKA1-201ENST00000285116 COL16A1Q07092 1604 aaPredicted RBP11.68□□□□□ -0.54
SKA1-201ENST00000285116 CTAGE15A4D2H0 777 aa11.67□□□□□ -0.54
SKA1-201ENST00000285116 CTAGE8P0CG41 777 aa11.67□□□□□ -0.54
SKA1-201ENST00000285116 VSNL1P62760 191 aa11.67□□□□□ -0.54
SKA1-201ENST00000285116 ZNF658Q5TYW1 1059 aaPredicted RBP11.67□□□□□ -0.54
SKA1-201ENST00000285116 SUSD4Q5VX71 490 aa11.67□□□□□ -0.54
SKA1-201ENST00000285116 CTAGE6Q86UF2 777 aa11.67□□□□□ -0.54
SKA1-201ENST00000285116 AMIGO3Q86WK7 504 aa11.67□□□□□ -0.54
SKA1-201ENST00000285116 CTAGE4Q8IX94 777 aa11.67□□□□□ -0.54
SKA1-201ENST00000285116 ZKSCAN3Q9BRR0 538 aa11.67□□□□□ -0.54
SKA1-201ENST00000285116 FAM204AQ9H8W3 233 aa11.67□□□□□ -0.54
SKA1-201ENST00000285116 VIPAS39Q9H9C1 493 aa11.67□□□□□ -0.54
SKA1-201ENST00000285116 SUGCTQ9HAC7 445 aa11.67□□□□□ -0.54
SKA1-201ENST00000285116 SH3GLB2Q9NR46 395 aa11.67□□□□□ -0.54
SKA1-201ENST00000285116 ABHD10Q9NUJ1 306 aa11.67□□□□□ -0.54
SKA1-201ENST00000285116 A0A1W2PQC6 194 aa11.67□□□□□ -0.54
SKA1-201ENST00000285116 IGHMBP2P38935 993 aaKnown RBP11.67□□□□□ -0.54
SKA1-201ENST00000285116 ARHGAP25P42331 645 aa11.67□□□□□ -0.54
SKA1-201ENST00000285116 AMPD2Q01433 879 aa11.67□□□□□ -0.54
SKA1-201ENST00000285116 KRT31Q15323 416 aa11.67□□□□□ -0.54
SKA1-201ENST00000285116 DNAJC21Q5F1R6 531 aaKnown RBP11.67□□□□□ -0.54
SKA1-201ENST00000285116 EARS2Q5JPH6 523 aaKnown RBP11.67□□□□□ -0.54
SKA1-201ENST00000285116 RRP12Q5JTH9 1297 aaKnown RBP11.67□□□□□ -0.54
SKA1-201ENST00000285116 ZNF569Q5MCW4 686 aa11.67□□□□□ -0.54
SKA1-201ENST00000285116 CTCFLQ8NI51 663 aaPredicted RBP11.67□□□□□ -0.54
SKA1-201ENST00000285116 A0A087WUV0 522 aaPredicted RBP11.66□□□□□ -0.54
SKA1-201ENST00000285116 NTSR2O95665 410 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 CYP7A1P22680 504 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 LONP1P36776 959 aaKnown RBP11.66□□□□□ -0.54
SKA1-201ENST00000285116 HSP90AA4PQ58FG1 418 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 WWC2Q6AWC2 1192 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 WDR93Q6P2C0 686 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 HELBQ8NG08 1087 aaPredicted RBP11.66□□□□□ -0.54
SKA1-201ENST00000285116 DRC1Q96MC2 740 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 NAPGQ99747 312 aaPredicted RBP11.66□□□□□ -0.54
SKA1-201ENST00000285116 VPS54Q9P1Q0 977 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 COL4A1P02462 1669 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 RHOXF2BP0C7M4 288 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 CASP14P31944 242 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 AARSP49588 968 aaKnown RBP eCLIP11.66□□□□□ -0.54
SKA1-201ENST00000285116 BCAMP50895 628 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 FXR1P51114 621 aaKnown RBP eCLIP11.66□□□□□ -0.54
SKA1-201ENST00000285116 COPB1P53618 953 aaKnown RBP11.66□□□□□ -0.54
SKA1-201ENST00000285116 PAK1Q13153 545 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 UBE4AQ14139 1066 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 KCNB1Q14721 858 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 TCP11X2Q5H9J9 407 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 IFIT1BQ5T764 474 aaKnown RBP11.66□□□□□ -0.54
SKA1-201ENST00000285116 IQCA1Q86XH1 822 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 SEPT12Q8IYM1 358 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 ANKRD20A12PQ8NF67 263 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 NUP133Q8WUM0 1156 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 RHOXF2Q9BQY4 288 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 GNL3LQ9NVN8 582 aaKnown RBP11.66□□□□□ -0.54
SKA1-201ENST00000285116 LRP2BPQ9P2M1 347 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 FAM205CA6NFA0 338 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 H7C1D1 291 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 CHRM1P11229 460 aaPredicted RBP11.66□□□□□ -0.54
SKA1-201ENST00000285116 SWT1Q5T5J6 900 aaKnown RBP11.66□□□□□ -0.54
SKA1-201ENST00000285116 INTS5Q6P9B9 1019 aaKnown RBP11.66□□□□□ -0.54
SKA1-201ENST00000285116 MMS22LQ6ZRQ5 1243 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 ADGRA1Q86SQ6 560 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 TADA2BQ86TJ2 420 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 AFAP1L1Q8TED9 768 aa11.66□□□□□ -0.54
SKA1-201ENST00000285116 COL24A1Q17RW2 1714 aa11.65□□□□□ -0.54
SKA1-201ENST00000285116 MYH14Q7Z406 1995 aaKnown RBP11.65□□□□□ -0.54
SKA1-201ENST00000285116 PHACTR2O75167 634 aa11.65□□□□□ -0.54
SKA1-201ENST00000285116 CAMTA2O94983 1202 aa11.65□□□□□ -0.54
SKA1-201ENST00000285116 ATP6V1AP38606 617 aa11.65□□□□□ -0.54
SKA1-201ENST00000285116 ERVK-24P63145 666 aa11.65□□□□□ -0.54
SKA1-201ENST00000285116 CHRNDQ07001 517 aa11.65□□□□□ -0.54
SKA1-201ENST00000285116 C4orf32Q8N8J7 132 aa11.65□□□□□ -0.54
SKA1-201ENST00000285116 DNAJC7Q99615 494 aa11.65□□□□□ -0.54
SKA1-201ENST00000285116 CTNND2Q9UQB3 1225 aa11.65□□□□□ -0.54
SKA1-201ENST00000285116 LRRIQ3A6PVS8 624 aaPredicted RBP11.65□□□□□ -0.54
SKA1-201ENST00000285116 PSMD14O00487 310 aa11.65□□□□□ -0.54
SKA1-201ENST00000285116 RNF40O75150 1001 aa11.65□□□□□ -0.54
SKA1-201ENST00000285116 AFMP43652 599 aa11.65□□□□□ -0.54
SKA1-201ENST00000285116 PTGDRQ13258 359 aa11.65□□□□□ -0.54
SKA1-201ENST00000285116 PFKFB3Q16875 520 aaPredicted RBP11.65□□□□□ -0.54
SKA1-201ENST00000285116 SBK1Q52WX2 424 aa11.65□□□□□ -0.54
SKA1-201ENST00000285116 NOC3LQ8WTT2 800 aaKnown RBP11.65□□□□□ -0.54
SKA1-201ENST00000285116 TOMM22Q9NS69 142 aa11.65□□□□□ -0.54
SKA1-201ENST00000285116 CCDC87Q9NVE4 849 aa11.65□□□□□ -0.54
SKA1-201ENST00000285116 NRAPQ86VF7 1730 aa11.65□□□□□ -0.54
SKA1-201ENST00000285116 SPATA31A1Q5TZJ5 1347 aa11.64□□□□□ -0.55
SKA1-201ENST00000285116 PLEKHA8P1O95397 391 aa11.64□□□□□ -0.55
SKA1-201ENST00000285116 MCM3P25205 808 aa11.64□□□□□ -0.55
SKA1-201ENST00000285116 EEF1GP26641 437 aaKnown RBP11.64□□□□□ -0.55
SKA1-201ENST00000285116 CALML3P27482 149 aa11.64□□□□□ -0.55
SKA1-201ENST00000285116 MCTP2Q6DN12 878 aa11.64□□□□□ -0.55
SKA1-201ENST00000285116 CMTR1Q8N1G2 835 aaKnown RBP11.64□□□□□ -0.55
SKA1-201ENST00000285116 SLC35F6Q8N357 371 aa11.64□□□□□ -0.55
SKA1-201ENST00000285116 ANKS1AQ92625 1134 aa11.64□□□□□ -0.55
SKA1-201ENST00000285116 MTRQ99707 1265 aa11.64□□□□□ -0.55
SKA1-201ENST00000285116 THAP9Q9H5L6 903 aa11.64□□□□□ -0.55
SKA1-201ENST00000285116 MAGEF1Q9HAY2 307 aa11.64□□□□□ -0.55
SKA1-201ENST00000285116 V9GY48 417 aaPredicted RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms