RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 IVLP07476 585 aa11.71□□□□□ -0.53
UPF3B-201ENST00000276201 CACNB3P54284 484 aa11.71□□□□□ -0.53
UPF3B-201ENST00000276201 GUCY1B3Q02153 619 aa11.71□□□□□ -0.53
UPF3B-201ENST00000276201 ZSCAN26Q16670 478 aa11.71□□□□□ -0.53
UPF3B-201ENST00000276201 CEP112Q8N8E3 955 aa11.71□□□□□ -0.53
UPF3B-201ENST00000276201 TC2NQ8N9U0 490 aa11.71□□□□□ -0.53
UPF3B-201ENST00000276201 PARD6BQ9BYG5 372 aa11.71□□□□□ -0.53
UPF3B-201ENST00000276201 GBA2Q9HCG7 927 aaPredicted RBP11.71□□□□□ -0.53
UPF3B-201ENST00000276201 PIH1D3Q9NQM4 214 aaKnown RBP11.71□□□□□ -0.53
UPF3B-201ENST00000276201 INTS13Q9NVM9 706 aa11.71□□□□□ -0.53
UPF3B-201ENST00000276201 MAST2Q6P0Q8 1798 aa11.71□□□□□ -0.53
UPF3B-201ENST00000276201 RASSF10A6NK89 507 aa11.71□□□□□ -0.54
UPF3B-201ENST00000276201 KIF28PB7ZC32 967 aa11.71□□□□□ -0.54
UPF3B-201ENST00000276201 CDKL5O76039 1030 aa11.71□□□□□ -0.54
UPF3B-201ENST00000276201 SEC31AO94979 1220 aaKnown RBP11.71□□□□□ -0.54
UPF3B-201ENST00000276201 FECHP22830 423 aa11.71□□□□□ -0.54
UPF3B-201ENST00000276201 IMMTQ16891 758 aaKnown RBP11.71□□□□□ -0.54
UPF3B-201ENST00000276201 SRGAP1Q7Z6B7 1085 aa11.71□□□□□ -0.54
UPF3B-201ENST00000276201 SAPCD2Q86UD0 394 aa11.71□□□□□ -0.54
UPF3B-201ENST00000276201 MLKLQ8NB16 471 aa11.71□□□□□ -0.54
UPF3B-201ENST00000276201 NSUN4Q96CB9 384 aaKnown RBP11.71□□□□□ -0.54
UPF3B-201ENST00000276201 MAP3K14Q99558 947 aa11.71□□□□□ -0.54
UPF3B-201ENST00000276201 PPP2R3BQ9Y5P8 575 aa11.71□□□□□ -0.54
UPF3B-201ENST00000276201 SSC5DA1L4H1 1573 aa11.71□□□□□ -0.54
UPF3B-201ENST00000276201 MYO5AQ9Y4I1 1855 aaKnown RBP11.71□□□□□ -0.54
UPF3B-201ENST00000276201 ZMYM6O95789 1325 aa11.71□□□□□ -0.54
UPF3B-201ENST00000276201 PAPPA2Q9BXP8 1791 aa11.7□□□□□ -0.54
UPF3B-201ENST00000276201 NID2Q14112 1375 aa11.7□□□□□ -0.54
UPF3B-201ENST00000276201 TCP10L2B9ZVM9 353 aa11.7□□□□□ -0.54
UPF3B-201ENST00000276201 ACTN2P35609 894 aa11.7□□□□□ -0.54
UPF3B-201ENST00000276201 FOSBP53539 338 aa11.7□□□□□ -0.54
UPF3B-201ENST00000276201 MDM2Q00987 491 aaPredicted RBP11.7□□□□□ -0.54
UPF3B-201ENST00000276201 RASA3Q14644 834 aa11.7□□□□□ -0.54
UPF3B-201ENST00000276201 LONRF2Q1L5Z9 754 aa11.7□□□□□ -0.54
UPF3B-201ENST00000276201 SPECC1LQ69YQ0 1117 aa11.7□□□□□ -0.54
UPF3B-201ENST00000276201 CDC42EP5Q6NZY7 148 aa11.7□□□□□ -0.54
UPF3B-201ENST00000276201 SHC4Q6S5L8 630 aa11.7□□□□□ -0.54
UPF3B-201ENST00000276201 KRBA2Q6ZNG9 492 aa11.7□□□□□ -0.54
UPF3B-201ENST00000276201 FAM163AQ96GL9 167 aaPredicted RBP11.7□□□□□ -0.54
UPF3B-201ENST00000276201 RASSF4Q9H2L5 321 aa11.7□□□□□ -0.54
UPF3B-201ENST00000276201 RAI14Q9P0K7 980 aa11.7□□□□□ -0.54
UPF3B-201ENST00000276201 LRP2BPQ9P2M1 347 aa11.7□□□□□ -0.54
UPF3B-201ENST00000276201 STK36Q9NRP7 1315 aa11.7□□□□□ -0.54
UPF3B-201ENST00000276201 BIN1O00499 593 aa11.7□□□□□ -0.54
UPF3B-201ENST00000276201 POLR3GO15318 223 aaPredicted RBP11.7□□□□□ -0.54
UPF3B-201ENST00000276201 GNG11P61952 73 aa11.7□□□□□ -0.54
UPF3B-201ENST00000276201 NEK11Q8NG66 645 aa11.7□□□□□ -0.54
UPF3B-201ENST00000276201 WDR24Q96S15 920 aa11.7□□□□□ -0.54
UPF3B-201ENST00000276201 KLF18A0A0U1RQI7 1052 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 GOLIM4O00461 696 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 PRC1O43663 620 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 ERLIN1O75477 346 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 SARSP49591 514 aaKnown RBP11.69□□□□□ -0.54
UPF3B-201ENST00000276201 TNFAIP1Q13829 316 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 DEFB115Q30KQ5 88 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 MOB2Q70IA6 237 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 HDXQ7Z353 690 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 METTL16Q86W50 562 aaKnown RBP11.69□□□□□ -0.54
UPF3B-201ENST00000276201 CDAN1Q8IWY9 1227 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 SLF2Q8IX21 1173 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 C2orf69Q8N8R5 385 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 NCOA7Q8NI08 942 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 GBP3Q9H0R5 595 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 ADAM21Q9UKJ8 722 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 NAP1L2Q9ULW6 460 aaPredicted RBP11.69□□□□□ -0.54
UPF3B-201ENST00000276201 DOCK2Q92608 1830 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 GOLGA8BA8MQT2 603 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 EIF3JO75822 258 aaKnown RBP11.69□□□□□ -0.54
UPF3B-201ENST00000276201 POLR3DP05423 398 aaPredicted RBP11.69□□□□□ -0.54
UPF3B-201ENST00000276201 BTDP43251 543 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 GSTO1P78417 241 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 FKBP1CQ5VVH2 108 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 TEPSINQ96N21 525 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 TMEM39BQ9GZU3 492 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 USP40Q9NVE5 1235 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 FANCLQ9NW38 375 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 TMOD2Q9NZR1 351 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 CDC23Q9UJX2 597 aa11.69□□□□□ -0.54
UPF3B-201ENST00000276201 TMEM232C9JQI7 657 aa11.68□□□□□ -0.54
UPF3B-201ENST00000276201 M0R2C6 588 aa11.68□□□□□ -0.54
UPF3B-201ENST00000276201 FOXP2O15409 715 aa11.68□□□□□ -0.54
UPF3B-201ENST00000276201 CHGBP05060 677 aa11.68□□□□□ -0.54
UPF3B-201ENST00000276201 ERCC5P28715 1186 aaPredicted RBP11.68□□□□□ -0.54
UPF3B-201ENST00000276201 VEGFBP49765 207 aa11.68□□□□□ -0.54
UPF3B-201ENST00000276201 HUNKP57058 714 aa11.68□□□□□ -0.54
UPF3B-201ENST00000276201 ANTXR2P58335 489 aa11.68□□□□□ -0.54
UPF3B-201ENST00000276201 NR1I3Q14994 352 aa11.68□□□□□ -0.54
UPF3B-201ENST00000276201 BEND6Q5SZJ8 279 aaPredicted RBP11.68□□□□□ -0.54
UPF3B-201ENST00000276201 NBPF12Q5TAG4 269 aaPredicted RBP11.68□□□□□ -0.54
UPF3B-201ENST00000276201 SRLQ86TD4 932 aa11.68□□□□□ -0.54
UPF3B-201ENST00000276201 ZNF579Q8NAF0 562 aaKnown RBP11.68□□□□□ -0.54
UPF3B-201ENST00000276201 CCDC51Q96ER9 411 aa11.68□□□□□ -0.54
UPF3B-201ENST00000276201 GPR75-ASB3A0A0A6YYF3 556 aa11.68□□□□□ -0.54
UPF3B-201ENST00000276201 A0A1B0GTH6 734 aa11.68□□□□□ -0.54
UPF3B-201ENST00000276201 CPLX1O14810 134 aa11.68□□□□□ -0.54
UPF3B-201ENST00000276201 CCDC175P0C221 793 aa11.68□□□□□ -0.54
UPF3B-201ENST00000276201 NF2P35240 595 aa11.68□□□□□ -0.54
UPF3B-201ENST00000276201 FKBP1BP68106 108 aa11.68□□□□□ -0.54
UPF3B-201ENST00000276201 NFIAQ12857 509 aa11.68□□□□□ -0.54
UPF3B-201ENST00000276201 MORC3Q14149 939 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms