RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 CCDC51Q96ER9 411 aa13.92□□□□□ -0.18
CHMP3-201ENST00000263856 RNF40O75150 1001 aa13.91□□□□□ -0.18
CHMP3-201ENST00000263856 BMP15O95972 392 aa13.91□□□□□ -0.18
CHMP3-201ENST00000263856 KCNQ4P56696 695 aa13.91□□□□□ -0.18
CHMP3-201ENST00000263856 TROAPQ12815 778 aa13.91□□□□□ -0.18
CHMP3-201ENST00000263856 INF2Q27J81 1249 aa13.91□□□□□ -0.18
CHMP3-201ENST00000263856 ZNF658Q5TYW1 1059 aaPredicted RBP13.91□□□□□ -0.18
CHMP3-201ENST00000263856 OR8K1Q8NGG5 319 aa13.91□□□□□ -0.18
CHMP3-201ENST00000263856 SAR1BQ9Y6B6 198 aa13.91□□□□□ -0.18
CHMP3-201ENST00000263856 CAVIN4Q5BKX8 364 aa13.91□□□□□ -0.18
CHMP3-201ENST00000263856 CTR9Q6PD62 1173 aa13.91□□□□□ -0.18
CHMP3-201ENST00000263856 MSANTD4Q8NCY6 345 aa13.91□□□□□ -0.18
CHMP3-201ENST00000263856 HPS3Q969F9 1004 aa13.91□□□□□ -0.18
CHMP3-201ENST00000263856 CRACR2AQ9BSW2 395 aa13.91□□□□□ -0.18
CHMP3-201ENST00000263856 RBM28Q9NW13 759 aaKnown RBP13.91□□□□□ -0.18
CHMP3-201ENST00000263856 ZNHIT6Q9NWK9 470 aaKnown RBP13.91□□□□□ -0.18
CHMP3-201ENST00000263856 REXO2Q9Y3B8 237 aaKnown RBP13.91□□□□□ -0.18
CHMP3-201ENST00000263856 ADAMTSL3P82987 1691 aa13.91□□□□□ -0.18
CHMP3-201ENST00000263856 CNTNAP5Q8WYK1 1306 aa13.91□□□□□ -0.18
CHMP3-201ENST00000263856 IDEP14735 1019 aa13.91□□□□□ -0.18
CHMP3-201ENST00000263856 TTC19Q6DKK2 380 aaPredicted RBP13.91□□□□□ -0.18
CHMP3-201ENST00000263856 LIMA1Q9UHB6 759 aaKnown RBP13.91□□□□□ -0.18
CHMP3-201ENST00000263856 FAM205AQ6ZU69 1335 aa13.9□□□□□ -0.18
CHMP3-201ENST00000263856 DDX60Q8IY21 1712 aaKnown RBP13.9□□□□□ -0.18
CHMP3-201ENST00000263856 TULP2O00295 520 aa13.9□□□□□ -0.18
CHMP3-201ENST00000263856 GOLGA8HP0CJ92 632 aa13.9□□□□□ -0.18
CHMP3-201ENST00000263856 NAP1L1P55209 391 aaKnown RBP13.9□□□□□ -0.18
CHMP3-201ENST00000263856 TBC1D8BQ0IIM8 1120 aa13.9□□□□□ -0.18
CHMP3-201ENST00000263856 STIM1Q13586 685 aa13.9□□□□□ -0.18
CHMP3-201ENST00000263856 CCDC96Q2M329 555 aa13.9□□□□□ -0.18
CHMP3-201ENST00000263856 PDXDC2PQ6P474 469 aa13.9□□□□□ -0.18
CHMP3-201ENST00000263856 CSGALNACT2Q8N6G5 542 aa13.9□□□□□ -0.18
CHMP3-201ENST00000263856 SMARCC1Q92922 1105 aaPredicted RBP13.9□□□□□ -0.18
CHMP3-201ENST00000263856 RMND1Q9NWS8 449 aa13.9□□□□□ -0.18
CHMP3-201ENST00000263856 CXCR5P32302 372 aa13.9□□□□□ -0.18
CHMP3-201ENST00000263856 DTHD1Q6ZMT9 781 aa13.9□□□□□ -0.18
CHMP3-201ENST00000263856 KRT26Q7Z3Y9 468 aa13.9□□□□□ -0.18
CHMP3-201ENST00000263856 MB21D1Q8N884 522 aa13.9□□□□□ -0.18
CHMP3-201ENST00000263856 VAT1LQ9HCJ6 419 aa13.9□□□□□ -0.18
CHMP3-201ENST00000263856 MCM9Q9NXL9 1143 aa13.9□□□□□ -0.18
CHMP3-201ENST00000263856 RAB21Q9UL25 225 aa13.9□□□□□ -0.18
CHMP3-201ENST00000263856 STX8Q9UNK0 236 aa13.9□□□□□ -0.18
CHMP3-201ENST00000263856 TNS2Q63HR2 1409 aa13.9□□□□□ -0.18
CHMP3-201ENST00000263856 KLRK1P26718 216 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 ATP2B2Q01814 1243 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 FUT2Q10981 343 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 E2F4Q16254 413 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 ZNF34Q8IZ26 560 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 STAG2Q8N3U4 1231 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 LACRTQ9GZZ8 138 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 KAT14Q9H8E8 782 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 SMARCAL1Q9NZC9 954 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 EXOC5O00471 708 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 PSMA7O14818 248 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 ASIC1P78348 528 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 NPY5RQ15761 445 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 ENOX2Q16206 610 aaKnown RBP13.89□□□□□ -0.19
CHMP3-201ENST00000263856 SRLQ86TD4 932 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 ANKRD13CQ8N6S4 541 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 UIMC1Q96RL1 719 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 TMEM60Q9H2L4 133 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 DEF6Q9H4E7 631 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 MYH3P11055 1940 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 SEMA3EO15041 775 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 KRT86O43790 486 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 ZPR1O75312 459 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 HERVK_113P62684 666 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 MUM1L1Q5H9M0 696 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 ANKRD18AQ8IVF6 992 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 BLIDQ8IZY5 108 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 HNRNPLLQ8WVV9 542 aaKnown RBP13.89□□□□□ -0.19
CHMP3-201ENST00000263856 POLD4Q9HCU8 107 aa13.89□□□□□ -0.19
CHMP3-201ENST00000263856 CALM1P0DP23 149 aa13.88□□□□□ -0.19
CHMP3-201ENST00000263856 CALM2P0DP24 149 aa13.88□□□□□ -0.19
CHMP3-201ENST00000263856 CALM3P0DP25 149 aa13.88□□□□□ -0.19
CHMP3-201ENST00000263856 IL6STP40189 918 aaPredicted RBP13.88□□□□□ -0.19
CHMP3-201ENST00000263856 TRIM14Q14142 442 aa13.88□□□□□ -0.19
CHMP3-201ENST00000263856 FAM71BQ8TC56 605 aa13.88□□□□□ -0.19
CHMP3-201ENST00000263856 AFAP1L1Q8TED9 768 aa13.88□□□□□ -0.19
CHMP3-201ENST00000263856 DYNLL2Q96FJ2 89 aa13.88□□□□□ -0.19
CHMP3-201ENST00000263856 RIOK1Q9BRS2 568 aaKnown RBP13.88□□□□□ -0.19
CHMP3-201ENST00000263856 TUBGCP2Q9BSJ2 902 aa13.88□□□□□ -0.19
CHMP3-201ENST00000263856 PARP4Q9UKK3 1724 aaKnown RBP13.88□□□□□ -0.19
CHMP3-201ENST00000263856 ITIH6Q6UXX5 1313 aa13.88□□□□□ -0.19
CHMP3-201ENST00000263856 USP17L8P0C7I0 530 aa13.88□□□□□ -0.19
CHMP3-201ENST00000263856 PRDX5P30044 214 aa13.88□□□□□ -0.19
CHMP3-201ENST00000263856 SLC7A5Q01650 507 aa13.88□□□□□ -0.19
CHMP3-201ENST00000263856 PDE4DQ08499 809 aa13.88□□□□□ -0.19
CHMP3-201ENST00000263856 LETM2Q2VYF4 491 aa13.88□□□□□ -0.19
CHMP3-201ENST00000263856 TYW1BQ6NUM6 668 aa13.88□□□□□ -0.19
CHMP3-201ENST00000263856 CERS3Q8IU89 383 aa13.88□□□□□ -0.19
CHMP3-201ENST00000263856 DISC1Q9NRI5 854 aa13.88□□□□□ -0.19
CHMP3-201ENST00000263856 FAM207AQ9NSI2 230 aaPredicted RBP13.88□□□□□ -0.19
CHMP3-201ENST00000263856 UBR2Q8IWV8 1755 aa13.88□□□□□ -0.19
CHMP3-201ENST00000263856 RCCD1A6NED2 376 aa13.87□□□□□ -0.19
CHMP3-201ENST00000263856 PLEKP08567 350 aaPredicted RBP13.87□□□□□ -0.19
CHMP3-201ENST00000263856 CYLC1P35663 651 aaPredicted RBP13.87□□□□□ -0.19
CHMP3-201ENST00000263856 USP5P45974 858 aa13.87□□□□□ -0.19
CHMP3-201ENST00000263856 CRKLP46109 303 aaKnown RBP13.87□□□□□ -0.19
CHMP3-201ENST00000263856 NOC4LQ9BVI4 516 aaKnown RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms