RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 C3orf67Q6ZVT6 689 aa14.21□□□□□ -0.13
LIG1-201ENST00000263274 STAG2Q8N3U4 1231 aa14.21□□□□□ -0.13
LIG1-201ENST00000263274 CELF1Q92879 486 aaKnown RBP14.21□□□□□ -0.13
LIG1-201ENST00000263274 B4DLN1 442 aa14.21□□□□□ -0.13
LIG1-201ENST00000263274 CYP27A1Q02318 531 aa14.21□□□□□ -0.13
LIG1-201ENST00000263274 DDB1Q16531 1140 aa14.21□□□□□ -0.13
LIG1-201ENST00000263274 LETM2Q2VYF4 491 aa14.21□□□□□ -0.13
LIG1-201ENST00000263274 TMED8Q6PL24 325 aaPredicted RBP14.21□□□□□ -0.13
LIG1-201ENST00000263274 RASGRP2Q7LDG7 609 aa14.21□□□□□ -0.13
LIG1-201ENST00000263274 BLIDQ8IZY5 108 aa14.21□□□□□ -0.13
LIG1-201ENST00000263274 ANKZF1Q9H8Y5 726 aa14.21□□□□□ -0.13
LIG1-201ENST00000263274 RMND1Q9NWS8 449 aa14.21□□□□□ -0.13
LIG1-201ENST00000263274 RSPH14Q9UHP6 348 aa14.21□□□□□ -0.13
LIG1-201ENST00000263274 SAP30BPQ9UHR5 308 aaKnown RBP14.21□□□□□ -0.13
LIG1-201ENST00000263274 KIF5BP33176 963 aa14.2□□□□□ -0.14
LIG1-201ENST00000263274 ATP2C1P98194 919 aaPredicted RBP14.2□□□□□ -0.14
LIG1-201ENST00000263274 MECOMQ03112 1051 aa14.2□□□□□ -0.14
LIG1-201ENST00000263274 TBC1D8BQ0IIM8 1120 aa14.2□□□□□ -0.14
LIG1-201ENST00000263274 PPP2R5BQ15173 497 aa14.2□□□□□ -0.14
LIG1-201ENST00000263274 PARP10Q53GL7 1025 aa14.2□□□□□ -0.14
LIG1-201ENST00000263274 CDKAL1Q5VV42 579 aa14.2□□□□□ -0.14
LIG1-201ENST00000263274 APTXQ7Z2E3 356 aaKnown RBP14.2□□□□□ -0.14
LIG1-201ENST00000263274 RIOK1Q9BRS2 568 aaKnown RBP14.2□□□□□ -0.14
LIG1-201ENST00000263274 PLEKHA4Q9H4M7 779 aa14.2□□□□□ -0.14
LIG1-201ENST00000263274 ANKRD65E5RJM6 399 aa14.2□□□□□ -0.14
LIG1-201ENST00000263274 ASIC1P78348 528 aa14.2□□□□□ -0.14
LIG1-201ENST00000263274 CSGALNACT2Q8N6G5 542 aa14.2□□□□□ -0.14
LIG1-201ENST00000263274 OR8K1Q8NGG5 319 aa14.2□□□□□ -0.14
LIG1-201ENST00000263274 RABEP2Q9H5N1 569 aa14.2□□□□□ -0.14
LIG1-201ENST00000263274 PSMA7O14818 248 aa14.2□□□□□ -0.14
LIG1-201ENST00000263274 NDUFA10O95299 355 aa14.2□□□□□ -0.14
LIG1-201ENST00000263274 ENOX2Q16206 610 aaKnown RBP14.2□□□□□ -0.14
LIG1-201ENST00000263274 SPATA20Q8TB22 786 aa14.2□□□□□ -0.14
LIG1-201ENST00000263274 ATRNO75882 1429 aa14.2□□□□□ -0.14
LIG1-201ENST00000263274 USP17L3A6NCW0 530 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 USP17L4A6NCW7 530 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 ATP8B1O43520 1251 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 RAD21O60216 631 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 TJP1Q07157 1748 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 ZNF658Q5TYW1 1059 aaPredicted RBP14.19□□□□□ -0.14
LIG1-201ENST00000263274 USP17L1Q7RTZ2 530 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 ELOA2Q8IYF1 753 aaPredicted RBP14.19□□□□□ -0.14
LIG1-201ENST00000263274 CCDC47Q96A33 483 aaKnown RBP14.19□□□□□ -0.14
LIG1-201ENST00000263274 FAM84BQ96KN1 310 aaPredicted RBP14.19□□□□□ -0.14
LIG1-201ENST00000263274 MTRQ99707 1265 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 RWDD2AQ9UIY3 292 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 IDEP14735 1019 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 RAD51AP2Q09MP3 1159 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 IL17AQ16552 155 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 GSPT2Q8IYD1 628 aaKnown RBP14.19□□□□□ -0.14
LIG1-201ENST00000263274 ZNF444Q8N0Y2 327 aaPredicted RBP14.19□□□□□ -0.14
LIG1-201ENST00000263274 SLC44A5Q8NCS7 719 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 PNMA1Q8ND90 353 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 HPS3Q969F9 1004 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 TSPYL1Q9H0U9 437 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 DEF6Q9H4E7 631 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 DCP1AQ9NPI6 582 aaPredicted RBP14.19□□□□□ -0.14
LIG1-201ENST00000263274 ZNF652Q9Y2D9 606 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 SPEF2Q9C093 1822 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 POTEB2H3BUK9 544 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 TSPY3P0CV98 308 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 TSPY8P0CW00 308 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 HIBADHP31937 336 aaKnown RBP14.19□□□□□ -0.14
LIG1-201ENST00000263274 PMS1P54277 932 aaKnown RBP14.19□□□□□ -0.14
LIG1-201ENST00000263274 PDE4DQ08499 809 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 CASP8Q14790 479 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 FEZ2Q9UHY8 353 aaPredicted RBP14.19□□□□□ -0.14
LIG1-201ENST00000263274 MINPP1Q9UNW1 487 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 ALS2Q96Q42 1657 aa14.19□□□□□ -0.14
LIG1-201ENST00000263274 CNTNAP5Q8WYK1 1306 aa14.18□□□□□ -0.14
LIG1-201ENST00000263274 AKAP11Q9UKA4 1901 aa14.18□□□□□ -0.14
LIG1-201ENST00000263274 KLK7P49862 253 aa14.18□□□□□ -0.14
LIG1-201ENST00000263274 FUT2Q10981 343 aa14.18□□□□□ -0.14
LIG1-201ENST00000263274 INTS5Q6P9B9 1019 aaKnown RBP14.18□□□□□ -0.14
LIG1-201ENST00000263274 SH3RF1Q7Z6J0 888 aa14.18□□□□□ -0.14
LIG1-201ENST00000263274 CCDC51Q96ER9 411 aa14.18□□□□□ -0.14
LIG1-201ENST00000263274 TANGO6Q9C0B7 1094 aa14.18□□□□□ -0.14
LIG1-201ENST00000263274 TMEM60Q9H2L4 133 aa14.18□□□□□ -0.14
LIG1-201ENST00000263274 CWC15Q9P013 229 aaKnown RBP14.18□□□□□ -0.14
LIG1-201ENST00000263274 TNS2Q63HR2 1409 aa14.18□□□□□ -0.14
LIG1-201ENST00000263274 MARCH6O60337 910 aa14.18□□□□□ -0.14
LIG1-201ENST00000263274 CAMTA2O94983 1202 aa14.18□□□□□ -0.14
LIG1-201ENST00000263274 CALML3P27482 149 aa14.18□□□□□ -0.14
LIG1-201ENST00000263274 ITPK1Q13572 414 aa14.18□□□□□ -0.14
LIG1-201ENST00000263274 BEND6Q5SZJ8 279 aaPredicted RBP14.18□□□□□ -0.14
LIG1-201ENST00000263274 GBP3Q9H0R5 595 aa14.18□□□□□ -0.14
LIG1-201ENST00000263274 TCP11L1Q9NUJ3 509 aa14.18□□□□□ -0.14
LIG1-201ENST00000263274 AGPAT5Q9NUQ2 364 aa14.18□□□□□ -0.14
LIG1-201ENST00000263274 ANKIB1Q9P2G1 1089 aa14.18□□□□□ -0.14
LIG1-201ENST00000263274 CCDC96Q2M329 555 aa14.17□□□□□ -0.14
LIG1-201ENST00000263274 AMOTL1Q8IY63 956 aa14.17□□□□□ -0.14
LIG1-201ENST00000263274 ACBD3Q9H3P7 528 aa14.17□□□□□ -0.14
LIG1-201ENST00000263274 FAM205AQ6ZU69 1335 aa14.17□□□□□ -0.14
LIG1-201ENST00000263274 SRCAPQ6ZRS2 3230 aa14.17□□□□□ -0.14
LIG1-201ENST00000263274 KCNQ2O43526 872 aa14.17□□□□□ -0.14
LIG1-201ENST00000263274 CCNT1O60563 726 aaKnown RBP14.17□□□□□ -0.14
LIG1-201ENST00000263274 DDAH1O94760 285 aa14.17□□□□□ -0.14
LIG1-201ENST00000263274 NTSR2O95665 410 aa14.17□□□□□ -0.14
LIG1-201ENST00000263274 ATP1A1P05023 1023 aaKnown RBP14.17□□□□□ -0.14
LIG1-201ENST00000263274 SSBP05455 408 aaKnown RBP eCLIP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms