RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 ABCA3Q99758 1704 aa24.04■■□□□ 1.44
TRIM28-201ENST00000253024 F8W031 263 aaPredicted RBP24.03■■□□□ 1.44
TRIM28-201ENST00000253024 SKIDA1Q1XH10 827 aa24.03■■□□□ 1.44
TRIM28-201ENST00000253024 ZMYND10O75800 440 aa24.03■■□□□ 1.44
TRIM28-201ENST00000253024 TPM1P09493 284 aa24.03■■□□□ 1.44
TRIM28-201ENST00000253024 PNKPQ96T60 521 aa24.03■■□□□ 1.44
TRIM28-201ENST00000253024 DOT1LQ8TEK3 1739 aa24.03■■□□□ 1.44
TRIM28-201ENST00000253024 DDAH1O94760 285 aa24.03■■□□□ 1.44
TRIM28-201ENST00000253024 CALM1P0DP23 149 aa24.03■■□□□ 1.44
TRIM28-201ENST00000253024 CALM2P0DP24 149 aa24.03■■□□□ 1.44
TRIM28-201ENST00000253024 CALM3P0DP25 149 aa24.03■■□□□ 1.44
TRIM28-201ENST00000253024 MAPK8IP2Q13387 824 aaPredicted RBP24.03■■□□□ 1.44
TRIM28-201ENST00000253024 JAKMIP3Q5VZ66 844 aa24.03■■□□□ 1.44
TRIM28-201ENST00000253024 ABHD10Q9NUJ1 306 aa24.03■■□□□ 1.44
TRIM28-201ENST00000253024 B4DLN1 442 aa24.02■■□□□ 1.44
TRIM28-201ENST00000253024 TCP11X2Q5H9J9 407 aa24.02■■□□□ 1.44
TRIM28-201ENST00000253024 DTHD1Q6ZMT9 781 aa24.02■■□□□ 1.44
TRIM28-201ENST00000253024 ANKRD36CQ5JPF3 1778 aa24.02■■□□□ 1.44
TRIM28-201ENST00000253024 ZRANB2O95218 330 aaKnown RBP eCLIP24.02■■□□□ 1.444e-7■■□□□ 13.4
TRIM28-201ENST00000253024 ZNF444Q8N0Y2 327 aaPredicted RBP24.02■■□□□ 1.44
TRIM28-201ENST00000253024 GOLGA1Q92805 767 aa24.02■■□□□ 1.44
TRIM28-201ENST00000253024 TTC26A0AVF1 554 aa24.01■■□□□ 1.43
TRIM28-201ENST00000253024 ATP2B2Q01814 1243 aa24.01■■□□□ 1.43
TRIM28-201ENST00000253024 SF3B3Q15393 1217 aaKnown RBP24.01■■□□□ 1.43
TRIM28-201ENST00000253024 FCHSD1Q86WN1 690 aa24.01■■□□□ 1.43
TRIM28-201ENST00000253024 DRC1Q96MC2 740 aa24.01■■□□□ 1.43
TRIM28-201ENST00000253024 ARFGAP3Q9NP61 516 aa24.01■■□□□ 1.43
TRIM28-201ENST00000253024 CCNT1O60563 726 aaKnown RBP24.01■■□□□ 1.43
TRIM28-201ENST00000253024 KIF20AO95235 890 aa24.01■■□□□ 1.43
TRIM28-201ENST00000253024 FCER1AP12319 257 aa24.01■■□□□ 1.43
TRIM28-201ENST00000253024 MYH8P13535 1937 aa24.01■■□□□ 1.43
TRIM28-201ENST00000253024 FRMPD2Q68DX3 1309 aaPredicted RBP24.01■■□□□ 1.43
TRIM28-201ENST00000253024 FAM170AA1A519 330 aa24■■□□□ 1.43
TRIM28-201ENST00000253024 LDHBP07195 334 aaKnown RBP24■■□□□ 1.43
TRIM28-201ENST00000253024 PARP1P09874 1014 aaKnown RBP24■■□□□ 1.43
TRIM28-201ENST00000253024 TXLNAP40222 546 aa24■■□□□ 1.43
TRIM28-201ENST00000253024 TECP42680 631 aa24■■□□□ 1.43
TRIM28-201ENST00000253024 PANX2Q96RD6 677 aa24■■□□□ 1.43
TRIM28-201ENST00000253024 BIN2Q9UBW5 565 aaPredicted RBP24■■□□□ 1.43
TRIM28-201ENST00000253024 CYP27A1Q02318 531 aa24■■□□□ 1.43
TRIM28-201ENST00000253024 SMC1AQ14683 1233 aaKnown RBP24■■□□□ 1.43
TRIM28-201ENST00000253024 NAALADL2Q58DX5 795 aa24■■□□□ 1.43
TRIM28-201ENST00000253024 FKBP15Q5T1M5 1219 aa24■■□□□ 1.43
TRIM28-201ENST00000253024 RGS22Q8NE09 1264 aa24■■□□□ 1.43
TRIM28-201ENST00000253024 BCL9LQ86UU0 1499 aa24■■□□□ 1.43
TRIM28-201ENST00000253024 N4BP1O75113 896 aaKnown RBP24■■□□□ 1.43
TRIM28-201ENST00000253024 NOA1Q8NC60 698 aaKnown RBP24■■□□□ 1.43
TRIM28-201ENST00000253024 PSMB7Q99436 277 aa24■■□□□ 1.43
TRIM28-201ENST00000253024 AGPAT5Q9NUQ2 364 aa24■■□□□ 1.43
TRIM28-201ENST00000253024 TMEM260Q9NX78 707 aa24■■□□□ 1.43
TRIM28-201ENST00000253024 NID2Q14112 1375 aa24■■□□□ 1.43
TRIM28-201ENST00000253024 GTPBP6O43824 516 aaPredicted RBP23.99■■□□□ 1.43
TRIM28-201ENST00000253024 PBX1P40424 430 aa23.99■■□□□ 1.43
TRIM28-201ENST00000253024 NAPAP54920 295 aa23.99■■□□□ 1.43
TRIM28-201ENST00000253024 PICALMQ13492 652 aa23.99■■□□□ 1.43
TRIM28-201ENST00000253024 A0A0U1RQG5 324 aaPredicted RBP23.99■■□□□ 1.43
TRIM28-201ENST00000253024 KIF5BP33176 963 aa23.99■■□□□ 1.43
TRIM28-201ENST00000253024 DISC1Q9NRI5 854 aa23.99■■□□□ 1.43
TRIM28-201ENST00000253024 PCDHA6Q9UN73 950 aa23.99■■□□□ 1.43
TRIM28-201ENST00000253024 PCDHA8Q9Y5H6 950 aa23.99■■□□□ 1.43
TRIM28-201ENST00000253024 DUSP10Q9Y6W6 482 aa23.99■■□□□ 1.43
TRIM28-201ENST00000253024 CTAGE9A4FU28 777 aa23.98■■□□□ 1.43
TRIM28-201ENST00000253024 LONRF2Q1L5Z9 754 aa23.98■■□□□ 1.43
TRIM28-201ENST00000253024 DYMQ7RTS9 669 aa23.98■■□□□ 1.43
TRIM28-201ENST00000253024 IRF2BP1Q8IU81 584 aa23.98■■□□□ 1.43
TRIM28-201ENST00000253024 CNGA4Q8IV77 575 aa23.98■■□□□ 1.43
TRIM28-201ENST00000253024 CTAGE1Q96RT6 745 aa23.98■■□□□ 1.43
TRIM28-201ENST00000253024 PODXL2Q9NZ53 605 aa23.98■■□□□ 1.43
TRIM28-201ENST00000253024 GOLGA6L9A6NEM1 432 aa23.98■■□□□ 1.43
TRIM28-201ENST00000253024 KCTD19Q17RG1 926 aaPredicted RBP23.98■■□□□ 1.43
TRIM28-201ENST00000253024 ANKRD20A12PQ8NF67 263 aa23.98■■□□□ 1.43
TRIM28-201ENST00000253024 TMEM47Q9BQJ4 181 aa23.98■■□□□ 1.43
TRIM28-201ENST00000253024 MAD2L2Q9UI95 211 aa23.98■■□□□ 1.43
TRIM28-201ENST00000253024 PCDHA4Q9UN74 947 aa23.98■■□□□ 1.43
TRIM28-201ENST00000253024 DUOX1Q9NRD9 1551 aa23.98■■□□□ 1.43
TRIM28-201ENST00000253024 ZNF658Q5TYW1 1059 aaPredicted RBP23.97■■□□□ 1.43
TRIM28-201ENST00000253024 KLRF2D3W0D1 207 aa23.97■■□□□ 1.43
TRIM28-201ENST00000253024 PLCG1P19174 1290 aa23.97■■□□□ 1.43
TRIM28-201ENST00000253024 TXKP42681 527 aa23.97■■□□□ 1.43
TRIM28-201ENST00000253024 TXNRD1Q16881 649 aa23.97■■□□□ 1.43
TRIM28-201ENST00000253024 RSRC2Q7L4I2 434 aaKnown RBP23.97■■□□□ 1.43
TRIM28-201ENST00000253024 GPR161Q8N6U8 529 aaKnown RBP23.97■■□□□ 1.43
TRIM28-201ENST00000253024 ARPP21Q9UBL0 812 aaPredicted RBP23.97■■□□□ 1.43
TRIM28-201ENST00000253024 MACROD2A1Z1Q3 448 aa23.97■■□□□ 1.43
TRIM28-201ENST00000253024 MYO1BO43795 1136 aa23.97■■□□□ 1.43
TRIM28-201ENST00000253024 ASIC1P78348 528 aa23.97■■□□□ 1.43
TRIM28-201ENST00000253024 SLC39A2Q9NP94 309 aa23.97■■□□□ 1.43
TRIM28-201ENST00000253024 ATP8A2Q9NTI2 1148 aa23.97■■□□□ 1.43
TRIM28-201ENST00000253024 FAM53CQ9NYF3 392 aa23.97■■□□□ 1.43
TRIM28-201ENST00000253024 H3BQF6 201 aa23.96■■□□□ 1.43
TRIM28-201ENST00000253024 PPP2R5BQ15173 497 aa23.96■■□□□ 1.43
TRIM28-201ENST00000253024 C4orf32Q8N8J7 132 aa23.96■■□□□ 1.43
TRIM28-201ENST00000253024 PLEKHA4Q9H4M7 779 aa23.96■■□□□ 1.43
TRIM28-201ENST00000253024 PDE11AQ9HCR9 933 aa23.96■■□□□ 1.43
TRIM28-201ENST00000253024 RWDD2AQ9UIY3 292 aa23.96■■□□□ 1.43
TRIM28-201ENST00000253024 CACNA1SQ13698 1873 aa23.96■■□□□ 1.43
TRIM28-201ENST00000253024 DNA2P51530 1060 aa23.96■■□□□ 1.43
TRIM28-201ENST00000253024 C12orf60Q5U649 245 aa23.96■■□□□ 1.43
TRIM28-201ENST00000253024 TPTE2Q6XPS3 522 aa23.96■■□□□ 1.43
TRIM28-201ENST00000253024 GSPT2Q8IYD1 628 aaKnown RBP23.96■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms