RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 CCDC160A6NGH7 325 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 EXOC3O60645 756 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 RXRAP19793 462 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 RBM6P78332 1123 aaKnown RBP14.09□□□□□ -0.15
USP40-201ENST00000251722 ANKRD35Q8N283 1001 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 AMNQ9BXJ7 453 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 CTNND2Q9UQB3 1225 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 A0A087WUV0 522 aaPredicted RBP14.09□□□□□ -0.15
USP40-201ENST00000251722 AGTPBP1Q9UPW5 1226 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 PALLDQ8WX93 1383 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 VAV2P52735 878 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 INF2Q27J81 1249 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 RMDN2Q96LZ7 410 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 GOLGA6CA6NDK9 693 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 GOLGA6BA6NDN3 693 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 FLOT1O75955 427 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 TNNC2P02585 160 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 GOLGA6DP0CG33 693 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 ATP11AP98196 1134 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 PPP2R3AQ06190 1150 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 TAOK1Q7L7X3 1001 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 TRIML1Q8N9V2 468 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 PNMA1Q8ND90 353 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 GOLGA6AQ9NYA3 693 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 STIM2Q9P246 746 aa14.09□□□□□ -0.15
USP40-201ENST00000251722 NLRP12P59046 1061 aa14.08□□□□□ -0.15
USP40-201ENST00000251722 PPP1R7Q15435 360 aa14.08□□□□□ -0.15
USP40-201ENST00000251722 USH1GQ495M9 461 aa14.08□□□□□ -0.15
USP40-201ENST00000251722 TTLL6Q8N841 843 aa14.08□□□□□ -0.15
USP40-201ENST00000251722 CCDC51Q96ER9 411 aa14.08□□□□□ -0.15
USP40-201ENST00000251722 FAM227BQ96M60 508 aa14.08□□□□□ -0.15
USP40-201ENST00000251722 METTL14Q9HCE5 456 aaKnown RBP14.08□□□□□ -0.15
USP40-201ENST00000251722 ADGRB3O60242 1522 aa14.08□□□□□ -0.15
USP40-201ENST00000251722 PRDM1O75626 825 aa14.08□□□□□ -0.16
USP40-201ENST00000251722 AOC3Q16853 763 aa14.08□□□□□ -0.16
USP40-201ENST00000251722 NEK8Q86SG6 692 aa14.08□□□□□ -0.16
USP40-201ENST00000251722 ATP6V0A1Q93050 837 aa14.08□□□□□ -0.16
USP40-201ENST00000251722 AP5M1Q9H0R1 490 aa14.08□□□□□ -0.16
USP40-201ENST00000251722 MRPL44Q9H9J2 332 aaKnown RBP14.08□□□□□ -0.16
USP40-201ENST00000251722 SPATA31A6Q5VVP1 1343 aa14.08□□□□□ -0.16
USP40-201ENST00000251722 KDM2BQ8NHM5 1336 aa14.08□□□□□ -0.16
USP40-201ENST00000251722 CACNA2D3Q8IZS8 1091 aa14.08□□□□□ -0.16
USP40-201ENST00000251722 ODF2LQ9ULJ1 636 aa14.08□□□□□ -0.16
USP40-201ENST00000251722 KAT6BQ8WYB5 2073 aa14.08□□□□□ -0.16
USP40-201ENST00000251722 ACTN4O43707 911 aaKnown RBP14.08□□□□□ -0.16
USP40-201ENST00000251722 MAGEA9P43362 315 aa14.08□□□□□ -0.16
USP40-201ENST00000251722 CIAPIN1Q6FI81 312 aa14.08□□□□□ -0.16
USP40-201ENST00000251722 ARMC2Q8NEN0 867 aa14.08□□□□□ -0.16
USP40-201ENST00000251722 JCADQ9P266 1359 aa14.08□□□□□ -0.16
USP40-201ENST00000251722 TTLL1O95922 423 aa14.08□□□□□ -0.16
USP40-201ENST00000251722 BRINP3Q76B58 766 aa14.08□□□□□ -0.16
USP40-201ENST00000251722 ARMCX6Q7L4S7 300 aa14.08□□□□□ -0.16
USP40-201ENST00000251722 FOXP4Q8IVH2 680 aaPredicted RBP14.08□□□□□ -0.16
USP40-201ENST00000251722 VCX3BQ9H321 246 aa14.08□□□□□ -0.16
USP40-201ENST00000251722 VCX3AQ9NNX9 186 aa14.08□□□□□ -0.16
USP40-201ENST00000251722 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.08□□□□□ -0.16
USP40-201ENST00000251722 PRDM15P57071 1507 aaPredicted RBP14.07□□□□□ -0.16
USP40-201ENST00000251722 PTCH1Q13635 1447 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 DAPK3O43293 454 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 SPOPO43791 374 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 SCG2P13521 617 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 AFAP1L2Q8N4X5 818 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 FANCBQ8NB91 859 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.07□□□□□ -0.16
USP40-201ENST00000251722 KLHDC4Q8TBB5 520 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 STAP2Q9UGK3 403 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 PFKFB2O60825 505 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 GBP1P32455 592 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 PDZD4Q76G19 769 aaPredicted RBP14.07□□□□□ -0.16
USP40-201ENST00000251722 TMTC1Q8IUR5 882 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 RIOK1Q9BRS2 568 aaKnown RBP14.07□□□□□ -0.16
USP40-201ENST00000251722 NACA2Q9H009 215 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 COL4A3BPQ9Y5P4 624 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 CPSF1Q10570 1443 aaKnown RBP14.07□□□□□ -0.16
USP40-201ENST00000251722 TCP10L2B9ZVM9 353 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 HARSP12081 509 aaKnown RBP14.07□□□□□ -0.16
USP40-201ENST00000251722 ALAS1P13196 640 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 SAAL1Q96ER3 474 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 FAM193BQ96PV7 902 aaPredicted RBP14.07□□□□□ -0.16
USP40-201ENST00000251722 LARSQ9P2J5 1176 aaKnown RBP14.07□□□□□ -0.16
USP40-201ENST00000251722 GYG1P46976 350 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 SRGAP1Q7Z6B7 1085 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 RETREG2Q8NC44 543 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 FAM210AQ96ND0 272 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 PAGR1Q9BTK6 254 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 WDR11Q9BZH6 1224 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 CXorf56Q9H5V9 222 aa14.07□□□□□ -0.16
USP40-201ENST00000251722 TMEM110-MUSTN1A8MSY1 372 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 COPB2P35606 906 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 PPP2R5EQ16537 467 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 CCDC186Q7Z3E2 898 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 KIAA0825Q8IV33 1275 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 BSDC1Q9NW68 430 aaPredicted RBP14.06□□□□□ -0.16
USP40-201ENST00000251722 PIM2Q9P1W9 311 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 ANAPC4Q9UJX5 808 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 USP17L3A6NCW0 530 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 USP17L4A6NCW7 530 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 GCNT3O95395 438 aa14.06□□□□□ -0.16
USP40-201ENST00000251722 OAS2P29728 719 aaKnown RBP14.06□□□□□ -0.16
USP40-201ENST00000251722 LONP1P36776 959 aaKnown RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms