RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 PIK3AP1Q6ZUJ8 805 aa17.04■□□□□ 0.32
CCDC47-201ENST00000225726 RNF214Q8ND24 703 aa17.04■□□□□ 0.32
CCDC47-201ENST00000225726 NAPAP54920 295 aa17.04■□□□□ 0.32
CCDC47-201ENST00000225726 CCDC96Q2M329 555 aa17.04■□□□□ 0.32
CCDC47-201ENST00000225726 NOM1Q5C9Z4 860 aaKnown RBP17.04■□□□□ 0.32
CCDC47-201ENST00000225726 HOMER1Q86YM7 354 aa17.04■□□□□ 0.32
CCDC47-201ENST00000225726 CLIC6Q96NY7 704 aa17.04■□□□□ 0.32
CCDC47-201ENST00000225726 ZMYND12Q9H0C1 365 aa17.04■□□□□ 0.32
CCDC47-201ENST00000225726 VAT1LQ9HCJ6 419 aa17.04■□□□□ 0.32
CCDC47-201ENST00000225726 SRPRBQ9Y5M8 271 aaKnown RBP17.04■□□□□ 0.32
CCDC47-201ENST00000225726 FZD9O00144 591 aa17.04■□□□□ 0.32
CCDC47-201ENST00000225726 WNT10BO00744 389 aa17.04■□□□□ 0.32
CCDC47-201ENST00000225726 UVSSAQ2YD98 709 aa17.04■□□□□ 0.32
CCDC47-201ENST00000225726 ZNF579Q8NAF0 562 aaKnown RBP17.04■□□□□ 0.32
CCDC47-201ENST00000225726 SASS6Q6UVJ0 657 aa17.03■□□□□ 0.32
CCDC47-201ENST00000225726 ADAMTS3O15072 1205 aa17.03■□□□□ 0.32
CCDC47-201ENST00000225726 TBC1D12O60347 775 aa17.03■□□□□ 0.32
CCDC47-201ENST00000225726 ZNF202O95125 648 aa17.03■□□□□ 0.32
CCDC47-201ENST00000225726 PDE4CQ08493 712 aa17.03■□□□□ 0.32
CCDC47-201ENST00000225726 SIAH1Q8IUQ4 282 aa17.03■□□□□ 0.32
CCDC47-201ENST00000225726 TIGD1Q96MW7 591 aa17.03■□□□□ 0.32
CCDC47-201ENST00000225726 SYNPO2Q9UMS6 1093 aa17.03■□□□□ 0.32
CCDC47-201ENST00000225726 GH2P01242 217 aa17.02■□□□□ 0.32
CCDC47-201ENST00000225726 PRELPP51888 382 aa17.02■□□□□ 0.32
CCDC47-201ENST00000225726 NBPF9Q3BBW0 867 aa17.02■□□□□ 0.32
CCDC47-201ENST00000225726 GMCL1P1Q8NEA9 526 aa17.02■□□□□ 0.32
CCDC47-201ENST00000225726 DPF2Q92785 391 aa17.02■□□□□ 0.32
CCDC47-201ENST00000225726 C6orf50Q9HD87 102 aa17.02■□□□□ 0.32
CCDC47-201ENST00000225726 PCDHA6Q9UN73 950 aa17.02■□□□□ 0.32
CCDC47-201ENST00000225726 PCDHA8Q9Y5H6 950 aa17.02■□□□□ 0.32
CCDC47-201ENST00000225726 MRVI1Q9Y6F6 885 aa17.02■□□□□ 0.32
CCDC47-201ENST00000225726 ESYT2A0FGR8 921 aa17.02■□□□□ 0.32
CCDC47-201ENST00000225726 RRP1BQ14684 758 aaKnown RBP17.02■□□□□ 0.32
CCDC47-201ENST00000225726 SPON1Q9HCB6 807 aa17.02■□□□□ 0.32
CCDC47-201ENST00000225726 SHTN1A0MZ66 631 aa17.02■□□□□ 0.31
CCDC47-201ENST00000225726 GNA11P29992 359 aa17.02■□□□□ 0.31
CCDC47-201ENST00000225726 SYKP43405 635 aa17.02■□□□□ 0.31
CCDC47-201ENST00000225726 TNNI2P48788 182 aa17.02■□□□□ 0.31
CCDC47-201ENST00000225726 SLFN13Q68D06 897 aa17.02■□□□□ 0.31
CCDC47-201ENST00000225726 ADGRF4Q8IZF3 695 aa17.02■□□□□ 0.31
CCDC47-201ENST00000225726 TMEM39BQ9GZU3 492 aa17.02■□□□□ 0.31
CCDC47-201ENST00000225726 CCDC173Q0VFZ6 552 aa17.01■□□□□ 0.31
CCDC47-201ENST00000225726 JMJD4Q9H9V9 463 aa17.01■□□□□ 0.31
CCDC47-201ENST00000225726 PNMA6FA0A0J9YX94 578 aa17.01■□□□□ 0.31
CCDC47-201ENST00000225726 CCDC194A0A1B0GVG4 234 aa17.01■□□□□ 0.31
CCDC47-201ENST00000225726 GMPSP49915 693 aaPredicted RBP17.01■□□□□ 0.31
CCDC47-201ENST00000225726 JAG1P78504 1218 aa17.01■□□□□ 0.31
CCDC47-201ENST00000225726 PPP1R18Q6NYC8 613 aa17.01■□□□□ 0.31
CCDC47-201ENST00000225726 SDF4Q9BRK5 362 aa17.01■□□□□ 0.31
CCDC47-201ENST00000225726 FAM13BQ9NYF5 915 aa17.01■□□□□ 0.31
CCDC47-201ENST00000225726 PGAP2Q9UHJ9 254 aa17.01■□□□□ 0.31
CCDC47-201ENST00000225726 SMCO2A6NFE2 343 aa17.01■□□□□ 0.31
CCDC47-201ENST00000225726 WNT7AO00755 349 aa17.01■□□□□ 0.31
CCDC47-201ENST00000225726 ZNF174Q15697 407 aa17.01■□□□□ 0.31
CCDC47-201ENST00000225726 TTBK2Q6IQ55 1244 aa17.01■□□□□ 0.31
CCDC47-201ENST00000225726 KCTD1Q719H9 257 aa17.01■□□□□ 0.31
CCDC47-201ENST00000225726 FERMT2Q96AC1 680 aa17.01■□□□□ 0.31
CCDC47-201ENST00000225726 MTMR8Q96EF0 704 aa17.01■□□□□ 0.31
CCDC47-201ENST00000225726 SLC1A4P43007 532 aa17■□□□□ 0.31
CCDC47-201ENST00000225726 GMCL1Q96IK5 515 aa17■□□□□ 0.31
CCDC47-201ENST00000225726 ATP2C1P98194 919 aaPredicted RBP17■□□□□ 0.31
CCDC47-201ENST00000225726 KRT25Q7Z3Z0 450 aa17■□□□□ 0.31
CCDC47-201ENST00000225726 RASGRP4Q8TDF6 673 aa17■□□□□ 0.31
CCDC47-201ENST00000225726 MICALL2Q8IY33 904 aa17■□□□□ 0.31
CCDC47-201ENST00000225726 PPP1R9BQ96SB3 815 aa17■□□□□ 0.31
CCDC47-201ENST00000225726 KCNH3Q9ULD8 1083 aa17■□□□□ 0.31
CCDC47-201ENST00000225726 GRIN1Q05586 938 aa16.99■□□□□ 0.31
CCDC47-201ENST00000225726 TNFAIP1Q13829 316 aa16.99■□□□□ 0.31
CCDC47-201ENST00000225726 GJA3Q9Y6H8 435 aa16.99■□□□□ 0.31
CCDC47-201ENST00000225726 MAP3K10Q02779 954 aa16.99■□□□□ 0.31
CCDC47-201ENST00000225726 FAM200AQ8TCP9 573 aa16.99■□□□□ 0.31
CCDC47-201ENST00000225726 DICER1Q9UPY3 1922 aaKnown RBP16.98■□□□□ 0.31
CCDC47-201ENST00000225726 F5H6K3 240 aa16.98■□□□□ 0.31
CCDC47-201ENST00000225726 ZBTB5O15062 677 aa16.98■□□□□ 0.31
CCDC47-201ENST00000225726 CAVIN2O95810 425 aa16.98■□□□□ 0.31
CCDC47-201ENST00000225726 KLRC3Q07444 240 aa16.98■□□□□ 0.31
CCDC47-201ENST00000225726 STX1AQ16623 288 aa16.98■□□□□ 0.31
CCDC47-201ENST00000225726 ANO6Q4KMQ2 910 aa16.98■□□□□ 0.31
CCDC47-201ENST00000225726 ARHGEF10LQ9HCE6 1279 aa16.98■□□□□ 0.31
CCDC47-201ENST00000225726 ZBTB21Q9ULJ3 1066 aa16.98■□□□□ 0.31
CCDC47-201ENST00000225726 SLC16A2P36021 539 aa16.98■□□□□ 0.31
CCDC47-201ENST00000225726 PTGDRQ13258 359 aa16.98■□□□□ 0.31
CCDC47-201ENST00000225726 CSRNP2Q9H175 543 aa16.98■□□□□ 0.31
CCDC47-201ENST00000225726 CNOT7Q9UIV1 285 aaKnown RBP16.98■□□□□ 0.31
CCDC47-201ENST00000225726 RAD21O60216 631 aa16.98■□□□□ 0.31
CCDC47-201ENST00000225726 ZNF541Q9H0D2 1346 aa16.98■□□□□ 0.31
CCDC47-201ENST00000225726 USP17L10C9JJH3 530 aa16.97■□□□□ 0.31
CCDC47-201ENST00000225726 NDUFB10O96000 172 aa16.97■□□□□ 0.31
CCDC47-201ENST00000225726 ADCY7P51828 1080 aa16.97■□□□□ 0.31
CCDC47-201ENST00000225726 CDAN1Q8IWY9 1227 aa16.97■□□□□ 0.31
CCDC47-201ENST00000225726 ELOA2Q8IYF1 753 aaPredicted RBP16.97■□□□□ 0.31
CCDC47-201ENST00000225726 COA7Q96BR5 231 aa16.97■□□□□ 0.31
CCDC47-201ENST00000225726 MCM7P33993 719 aa16.97■□□□□ 0.31
CCDC47-201ENST00000225726 NONOQ15233 471 aaKnown RBP eCLIP16.97■□□□□ 0.31
CCDC47-201ENST00000225726 SPECC1Q5M775 1068 aa16.97■□□□□ 0.31
CCDC47-201ENST00000225726 KIAA1468Q9P260 1216 aa16.97■□□□□ 0.31
CCDC47-201ENST00000225726 RASA3Q14644 834 aa16.97■□□□□ 0.31
CCDC47-201ENST00000225726 PPP1R11O60927 126 aaPredicted RBP16.96■□□□□ 0.31
CCDC47-201ENST00000225726 EGFRP00533 1210 aa16.96■□□□□ 0.31
CCDC47-201ENST00000225726 INF2Q27J81 1249 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms