RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 STAG2Q8N3U4 1231 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 CCDC155Q8N6L0 562 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 LRRC45Q96CN5 670 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 JAKMIP1Q96N16 626 aaKnown RBP3.95□□□□□ -1.78
SCN1A-221ENST00000641996 CCDC151A5D8V7 595 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 TRPA1O75762 1119 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 SNCBQ16143 134 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 CCDC26Q8TAB7 109 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 GBP5Q96PP8 586 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 C9orf78Q9NZ63 289 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-221ENST00000641996 GTF3C4Q9UKN8 822 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 STAMBPO95630 424 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 LRPAP1P30533 357 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 ALDH3A1P30838 453 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 MAGEA9P43362 315 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 FERMT2Q96AC1 680 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 RPGRIP1Q96KN7 1286 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 MKNK1Q9BUB5 465 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 GPCPD1Q9NPB8 672 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 SGK1O00141 431 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 VIL1P09327 827 aaKnown RBP3.95□□□□□ -1.78
SCN1A-221ENST00000641996 NLRP5P59047 1200 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 ANGPT1Q15389 498 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 LVRNQ6Q4G3 990 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 KRT27Q7Z3Y8 459 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 CEP112Q8N8E3 955 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 INPP5DQ92835 1189 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 PLSCR2Q9NRY7 297 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 SCINQ9Y6U3 715 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 SMARCA2P51531 1590 aa3.95□□□□□ -1.78
SCN1A-221ENST00000641996 SGTAO43765 313 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 HAND2P61296 217 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 FKBP5Q13451 457 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 MYOCDQ8IZQ8 938 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 ZBTB8BQ8NAP8 495 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 UTP15Q8TED0 518 aaKnown RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 EXT2Q93063 718 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 CCDC102AQ96A19 550 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 TUBA1CQ9BQE3 449 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 GBP3Q9H0R5 595 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 MTRF1O75570 445 aaKnown RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 CD151P48509 253 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 TMED10P49755 219 aaKnown RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 POLE2P56282 527 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 TCIRG1Q13488 830 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 SKOR2Q2VWA4 1001 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 RBM12BQ8IXT5 1001 aaKnown RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 COLGALT2Q8IYK4 626 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 TPRP12270 2363 aaKnown RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 CCDC192P0DO97 292 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 CLUP10909 449 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 KRT2P35908 639 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 PICALMQ13492 652 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 SLC5A4Q9NY91 659 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 RANBP6O60518 1105 aaKnown RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 EIF5P55010 431 aaKnown RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 DGLUCYQ7Z3D6 616 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 PPHLN1Q8NEY8 458 aaKnown RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 SMARCC1Q92922 1105 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 TNIP3Q96KP6 325 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 TEX13BQ9BXU2 312 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 ATP5HO75947 161 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 PRLP01236 227 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 ZFYP08048 801 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 CCDC14Q49A88 953 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 ODF2Q5BJF6 829 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 MPHOSPH8Q99549 860 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 ATP6V1DQ9Y5K8 247 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 CACNA1BQ00975 2339 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 WDR46O15213 610 aaKnown RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 EVI5O60447 810 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 SLC12A2P55011 1212 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 MAP3K12Q12852 859 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 BCL2L12Q9HB09 334 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 BMP2KQ9NSY1 1161 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 TRIM35Q9UPQ4 493 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 CAPN7Q9Y6W3 813 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 FAM170AA1A519 330 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 SMTNP53814 917 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 ATF7IPQ6VMQ6 1270 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 MAP3K14Q99558 947 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 PANK3Q9H999 370 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 ASAP1Q9ULH1 1129 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 ZSCAN12O43309 604 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 MTSS1O43312 755 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 PARP1P09874 1014 aaKnown RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 DYNC1I2Q13409 638 aaKnown RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 EIF4A2Q14240 407 aaKnown RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 TIFAQ96CG3 184 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 ZW10O43264 779 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 HMOX1P09601 288 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 MYBL1P10243 752 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 CLK1P49759 484 aaKnown RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 COPAP53621 1224 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 PTPN5P54829 565 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 CHMP7Q8WUX9 453 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-221ENST00000641996 SMARCE1Q969G3 411 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 PBXIP1Q96AQ6 731 aa3.94□□□□□ -1.78
SCN1A-221ENST00000641996 PLEKHG4BQ96PX9 1271 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms