RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 HDAC4P56524 1084 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 PDE4BQ07343 736 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 C19orf44Q9H6X5 657 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 HNRNPCP07910 306 aaKnown RBP eCLIP5.13□□□□□ -1.59
SCN1A-220ENST00000641603 SERPINB10P48595 397 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 ASPHQ12797 758 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 RTN1Q16799 776 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 ARHGAP27Q6ZUM4 889 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 EDEM3Q9BZQ6 932 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 TXNDC16Q9P2K2 825 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 MID2Q9UJV3 735 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 MTMR6Q9Y217 621 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 MTX1Q13505 466 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 ASIC2Q16515 512 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.12□□□□□ -1.59
SCN1A-220ENST00000641603 PRR16Q569H4 304 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 MYSM1Q5VVJ2 828 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 Q6ZUG5 572 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 CRACR2BQ8N4Y2 399 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-220ENST00000641603 CNKSR2Q8WXI2 1034 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 ADGRL3Q9HAR2 1447 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 LIN9Q5TKA1 542 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 SULT6B1Q6IMI4 303 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 CCDC124Q96CT7 223 aaKnown RBP5.12□□□□□ -1.59
SCN1A-220ENST00000641603 FAM177BA6PVY3 158 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 GHRP10912 638 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 ASIC1P78348 528 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 LRMPQ12912 555 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 WDR93Q6P2C0 686 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 HELBQ8NG08 1087 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-220ENST00000641603 ZSWIM6Q9HCJ5 1215 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 RIC8AQ9NPQ8 531 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 MBIPQ9NS73 344 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 IPO5O00410 1097 aaKnown RBP5.12□□□□□ -1.59
SCN1A-220ENST00000641603 AREL1O15033 823 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 FSBPO95073 299 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 TMED10P49755 219 aaKnown RBP5.12□□□□□ -1.59
SCN1A-220ENST00000641603 IKQ13123 557 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-220ENST00000641603 BYSLQ13895 437 aaKnown RBP5.12□□□□□ -1.59
SCN1A-220ENST00000641603 CENPUQ71F23 418 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 LZTS2Q9BRK4 669 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 UTP6Q9NYH9 597 aaKnown RBP5.12□□□□□ -1.59
SCN1A-220ENST00000641603 TULP2O00295 520 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 SPAG7O75391 227 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 GNA11P29992 359 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 IL15P40933 162 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-220ENST00000641603 USP14P54578 494 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 HS2ST1Q7LGA3 356 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 PPP1R42Q7Z4L9 355 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 PPP4R1Q8TF05 950 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 CUL5Q93034 780 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 ABCB6Q9NP58 842 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 DYTNA2CJ06 578 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 E9PMD0 336 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 PODXLO00592 558 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 PDE1BQ01064 536 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 LAMB3Q13751 1172 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 WTAPQ15007 396 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 SLF2Q8IX21 1173 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 FAM81BQ96LP2 452 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 SLC12A5Q9H2X9 1139 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 SEPT3Q9UH03 358 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 N4BP1O75113 896 aaKnown RBP5.12□□□□□ -1.59
SCN1A-220ENST00000641603 AP2B1P63010 937 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 NYAP1Q6ZVC0 841 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 DZIP3Q86Y13 1208 aaKnown RBP5.12□□□□□ -1.59
SCN1A-220ENST00000641603 FOXP3Q9BZS1 431 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 CNNM1Q9NRU3 951 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 SOX12O15370 315 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 DAB2IPQ5VWQ8 1189 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 NUGGCQ68CJ6 796 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 G3V3G9 751 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 GTPBP6O43824 516 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-220ENST00000641603 SMARCA5O60264 1052 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-220ENST00000641603 DCAF8Q5TAQ9 597 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 NLRP14Q86W24 1093 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 ELOA2Q8IYF1 753 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-220ENST00000641603 CFAP61Q8NHU2 1237 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 TRIM63Q969Q1 353 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 TRIM11Q96F44 468 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 DSCC1Q9BVC3 393 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 STK38LQ9Y2H1 464 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 LAD1O00515 517 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 MCF2LO15068 1137 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 RNF113AO15541 343 aaKnown RBP5.12□□□□□ -1.59
SCN1A-220ENST00000641603 TTI1O43156 1089 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 DEAF1O75398 565 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-220ENST00000641603 FAM107AO95990 144 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 GSTA5Q7RTV2 222 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 CROCCP3Q8IVE0 287 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 CCDC144CPQ8IYA2 1237 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 CCDC89Q8N998 374 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 TRIM15Q9C019 465 aa5.12□□□□□ -1.59
SCN1A-220ENST00000641603 PAPOLAP51003 745 aaKnown RBP5.11□□□□□ -1.59
SCN1A-220ENST00000641603 SNX16P57768 344 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 ZBED6P86452 979 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 FKBP4Q02790 459 aaKnown RBP eCLIP5.11□□□□□ -1.59
SCN1A-220ENST00000641603 MYO1EQ12965 1108 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 GSDMBQ8TAX9 411 aa5.11□□□□□ -1.59
SCN1A-220ENST00000641603 DDI1Q8WTU0 396 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms