RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 CDK8P49336 464 aa23.39■■□□□ 1.33
CLN3-262ENST00000637699 SNX17Q15036 470 aa23.39■■□□□ 1.33
CLN3-262ENST00000637699 CCDC17Q96LX7 622 aa23.39■■□□□ 1.33
CLN3-262ENST00000637699 FBXO28Q9NVF7 368 aa23.39■■□□□ 1.33
CLN3-262ENST00000637699 ZNFX1Q9P2E3 1918 aaKnown RBP23.38■■□□□ 1.33
CLN3-262ENST00000637699 BAZ2AQ9UIF9 1905 aaKnown RBP23.38■■□□□ 1.33
CLN3-262ENST00000637699 TRIM43BA6NCK2 446 aa23.38■■□□□ 1.33
CLN3-262ENST00000637699 USP17L12C9JPN9 530 aa23.38■■□□□ 1.33
CLN3-262ENST00000637699 USP17L21D6R901 530 aa23.38■■□□□ 1.33
CLN3-262ENST00000637699 SLC25A27O95847 323 aa23.38■■□□□ 1.33
CLN3-262ENST00000637699 PGK2P07205 417 aa23.38■■□□□ 1.33
CLN3-262ENST00000637699 C12orf60Q5U649 245 aa23.38■■□□□ 1.33
CLN3-262ENST00000637699 MIER1Q8N108 512 aa23.38■■□□□ 1.33
CLN3-262ENST00000637699 TRIM43Q96BQ3 446 aaPredicted RBP23.38■■□□□ 1.33
CLN3-262ENST00000637699 MMP19Q99542 508 aa23.38■■□□□ 1.33
CLN3-262ENST00000637699 EYSQ5T1H1 3165 aa23.38■■□□□ 1.33
CLN3-262ENST00000637699 SMCHD1A6NHR9 2005 aa23.37■■□□□ 1.33
CLN3-262ENST00000637699 RAD21O60216 631 aa23.37■■□□□ 1.33
CLN3-262ENST00000637699 CHGBP05060 677 aa23.37■■□□□ 1.33
CLN3-262ENST00000637699 EEF2P13639 858 aaKnown RBP23.37■■□□□ 1.33
CLN3-262ENST00000637699 TLE2Q04725 743 aa23.37■■□□□ 1.33
CLN3-262ENST00000637699 DIEXFQ68CQ4 756 aaKnown RBP23.37■■□□□ 1.33
CLN3-262ENST00000637699 AMOTL1Q8IY63 956 aa23.37■■□□□ 1.33
CLN3-262ENST00000637699 CDX2Q99626 313 aaPredicted RBP23.37■■□□□ 1.33
CLN3-262ENST00000637699 XPNPEP3Q9NQH7 507 aa23.37■■□□□ 1.33
CLN3-262ENST00000637699 HMMRO75330 724 aa23.36■■□□□ 1.33
CLN3-262ENST00000637699 RARBP10826 455 aa23.36■■□□□ 1.33
CLN3-262ENST00000637699 SIRT2Q8IXJ6 389 aa23.36■■□□□ 1.33
CLN3-262ENST00000637699 RPAP2Q8IXW5 612 aaPredicted RBP23.36■■□□□ 1.33
CLN3-262ENST00000637699 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.36■■□□□ 1.332e-6■■■■■ 40.7
CLN3-262ENST00000637699 SEMA6BQ9H3T3 888 aa23.36■■□□□ 1.33
CLN3-262ENST00000637699 ADAMTS5Q9UNA0 930 aa23.36■■□□□ 1.33
CLN3-262ENST00000637699 PGK1P00558 417 aa23.35■■□□□ 1.33
CLN3-262ENST00000637699 KCTD2Q14681 263 aa23.35■■□□□ 1.33
CLN3-262ENST00000637699 C1orf53Q5VUE5 145 aa23.35■■□□□ 1.33
CLN3-262ENST00000637699 C16orf86Q6ZW13 317 aa23.35■■□□□ 1.33
CLN3-262ENST00000637699 RIOX2Q8IUF8 465 aa23.35■■□□□ 1.33
CLN3-262ENST00000637699 DDRGK1Q96HY6 314 aa23.35■■□□□ 1.33
CLN3-262ENST00000637699 TINF2Q9BSI4 451 aa23.35■■□□□ 1.33
CLN3-262ENST00000637699 KANSL2Q9H9L4 492 aa23.35■■□□□ 1.33
CLN3-262ENST00000637699 PHF24Q9UPV7 400 aa23.35■■□□□ 1.33
CLN3-262ENST00000637699 COL11A1P12107 1806 aaPredicted RBP23.34■■□□□ 1.33
CLN3-262ENST00000637699 PARP14Q460N5 1801 aa23.34■■□□□ 1.33
CLN3-262ENST00000637699 RAB11FIP3O75154 756 aa23.34■■□□□ 1.33
CLN3-262ENST00000637699 TAL1P17542 331 aaPredicted RBP23.34■■□□□ 1.33
CLN3-262ENST00000637699 ATP5JP18859 108 aa23.34■■□□□ 1.33
CLN3-262ENST00000637699 STAT3P40763 770 aa23.34■■□□□ 1.33
CLN3-262ENST00000637699 RNF180Q86T96 592 aa23.34■■□□□ 1.33
CLN3-262ENST00000637699 GOPCQ9HD26 462 aa23.34■■□□□ 1.33
CLN3-262ENST00000637699 NRBP1Q9UHY1 535 aa23.34■■□□□ 1.33
CLN3-262ENST00000637699 SLC4A4Q9Y6R1 1079 aa23.34■■□□□ 1.33
CLN3-262ENST00000637699 VWA5AO00534 786 aa23.33■■□□□ 1.33
CLN3-262ENST00000637699 ZNF792Q3KQV3 632 aa23.33■■□□□ 1.33
CLN3-262ENST00000637699 FAM83BQ5T0W9 1011 aa23.33■■□□□ 1.33
CLN3-262ENST00000637699 HAUS7Q99871 368 aa23.33■■□□□ 1.33
CLN3-262ENST00000637699 PPP1R9AQ9ULJ8 1098 aa23.33■■□□□ 1.33
CLN3-262ENST00000637699 TACC3Q9Y6A5 838 aa23.33■■□□□ 1.33
CLN3-262ENST00000637699 MS4A1P11836 297 aa23.32■■□□□ 1.32
CLN3-262ENST00000637699 ITGB8P26012 769 aa23.32■■□□□ 1.32
CLN3-262ENST00000637699 SMAD3P84022 425 aaKnown RBP23.32■■□□□ 1.32
CLN3-262ENST00000637699 CTR9Q6PD62 1173 aa23.32■■□□□ 1.32
CLN3-262ENST00000637699 LENG1Q96BZ8 264 aaPredicted RBP23.32■■□□□ 1.32
CLN3-262ENST00000637699 DIS3Q9Y2L1 958 aaKnown RBP23.32■■□□□ 1.32
CLN3-262ENST00000637699 COG6Q9Y2V7 657 aa23.32■■□□□ 1.32
CLN3-262ENST00000637699 PRUNE2Q8WUY3 3088 aa23.32■■□□□ 1.32
CLN3-262ENST00000637699 PQBP1O60828 265 aaKnown RBP23.31■■□□□ 1.32
CLN3-262ENST00000637699 CLTBP09497 229 aa23.31■■□□□ 1.32
CLN3-262ENST00000637699 UBE3CQ15386 1083 aa23.31■■□□□ 1.32
CLN3-262ENST00000637699 MAFAQ8NHW3 353 aaPredicted RBP23.31■■□□□ 1.32
CLN3-262ENST00000637699 MYLIPQ8WY64 445 aa23.31■■□□□ 1.32
CLN3-262ENST00000637699 TTYH1Q9H313 450 aaPredicted RBP23.31■■□□□ 1.32
CLN3-262ENST00000637699 ZBTB40Q9NUA8 1239 aa23.31■■□□□ 1.32
CLN3-262ENST00000637699 ZNF214Q9UL59 606 aaPredicted RBP23.31■■□□□ 1.32
CLN3-262ENST00000637699 VCANP13611 3396 aa23.31■■□□□ 1.32
CLN3-262ENST00000637699 A0A1W2PQ45 241 aaPredicted RBP23.3■■□□□ 1.32
CLN3-262ENST00000637699 A0A1W2PQY0 241 aa23.3■■□□□ 1.32
CLN3-262ENST00000637699 ZNF865P0CJ78 1059 aaPredicted RBP23.3■■□□□ 1.32
CLN3-262ENST00000637699 EPHB4P54760 987 aa23.3■■□□□ 1.32
CLN3-262ENST00000637699 REPS2Q8NFH8 660 aa23.3■■□□□ 1.32
CLN3-262ENST00000637699 NUP88Q99567 741 aaPredicted RBP23.3■■□□□ 1.32
CLN3-262ENST00000637699 PUS7LQ9H0K6 701 aaKnown RBP23.3■■□□□ 1.32
CLN3-262ENST00000637699 DDX19BQ9UMR2 479 aa23.3■■□□□ 1.32
CLN3-262ENST00000637699 CNPY2Q9Y2B0 182 aa23.3■■□□□ 1.32
CLN3-262ENST00000637699 PLXNA1Q9UIW2 1896 aa23.3■■□□□ 1.32
CLN3-262ENST00000637699 AKR1A1P14550 325 aa23.29■■□□□ 1.32
CLN3-262ENST00000637699 RAG1P15918 1043 aa23.29■■□□□ 1.32
CLN3-262ENST00000637699 STK11IPQ8N1F8 1099 aa23.29■■□□□ 1.32
CLN3-262ENST00000637699 RNPC3Q96LT9 517 aaKnown RBP23.29■■□□□ 1.32
CLN3-262ENST00000637699 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.29■■□□□ 1.32
CLN3-262ENST00000637699 COPB2P35606 906 aa23.28■■□□□ 1.32
CLN3-262ENST00000637699 ZSCAN25Q6NSZ9 544 aa23.28■■□□□ 1.32
CLN3-262ENST00000637699 TMEM39AQ9NV64 488 aa23.28■■□□□ 1.32
CLN3-262ENST00000637699 CDH23Q9H251 3354 aa23.28■■□□□ 1.32
CLN3-262ENST00000637699 ZBED9Q6R2W3 1325 aa23.28■■□□□ 1.32
CLN3-262ENST00000637699 KIAA0355O15063 1070 aa23.27■■□□□ 1.32
CLN3-262ENST00000637699 ADAMTS4O75173 837 aa23.27■■□□□ 1.32
CLN3-262ENST00000637699 SLC4A3P48751 1232 aa23.27■■□□□ 1.32
CLN3-262ENST00000637699 SLF1Q9BQI6 1058 aa23.27■■□□□ 1.32
CLN3-262ENST00000637699 ACLYP53396 1101 aa23.26■■□□□ 1.31
CLN3-262ENST00000637699 SNRNP48Q6IEG0 339 aaKnown RBP23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms