RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 EIF5BO60841 1220 aaKnown RBP21.53■■□□□ 1.04
CLN3-259ENST00000637551 CYP21A2P08686 494 aa21.53■■□□□ 1.04
CLN3-259ENST00000637551 DSG3P32926 999 aa21.53■■□□□ 1.04
CLN3-259ENST00000637551 COPB2P35606 906 aa21.53■■□□□ 1.04
CLN3-259ENST00000637551 KIAA1755Q5JYT7 1200 aa21.53■■□□□ 1.04
CLN3-259ENST00000637551 SHCBP1Q8NEM2 672 aa21.53■■□□□ 1.04
CLN3-259ENST00000637551 TRIM47Q96LD4 638 aa21.53■■□□□ 1.04
CLN3-259ENST00000637551 SRRDQ9UH36 339 aa21.53■■□□□ 1.04
CLN3-259ENST00000637551 DOCK3Q8IZD9 2030 aa21.53■■□□□ 1.04
CLN3-259ENST00000637551 FLOT1O75955 427 aa21.52■■□□□ 1.04
CLN3-259ENST00000637551 IRF5Q13568 498 aa21.52■■□□□ 1.04
CLN3-259ENST00000637551 RRP12Q5JTH9 1297 aaKnown RBP21.52■■□□□ 1.04
CLN3-259ENST00000637551 RNF20Q5VTR2 975 aa21.52■■□□□ 1.04
CLN3-259ENST00000637551 PRPF38AQ8NAV1 312 aaKnown RBP21.52■■□□□ 1.04
CLN3-259ENST00000637551 COA7Q96BR5 231 aa21.52■■□□□ 1.04
CLN3-259ENST00000637551 FEM1BQ9UK73 627 aa21.52■■□□□ 1.04
CLN3-259ENST00000637551 PPP1R9AQ9ULJ8 1098 aa21.52■■□□□ 1.04
CLN3-259ENST00000637551 RBM8AQ9Y5S9 174 aaKnown RBP21.52■■□□□ 1.04
CLN3-259ENST00000637551 CENPFP49454 3210 aa21.52■■□□□ 1.04
CLN3-259ENST00000637551 POTEFA5A3E0 1075 aa21.51■■□□□ 1.03
CLN3-259ENST00000637551 ATP2A1O14983 1001 aa21.51■■□□□ 1.03
CLN3-259ENST00000637551 FAM160B2Q86V87 743 aa21.51■■□□□ 1.03
CLN3-259ENST00000637551 SPICE1Q8N0Z3 855 aa21.51■■□□□ 1.03
CLN3-259ENST00000637551 DCAF4Q8WV16 495 aa21.51■■□□□ 1.03
CLN3-259ENST00000637551 SOCS4Q8WXH5 440 aa21.51■■□□□ 1.03
CLN3-259ENST00000637551 SLF1Q9BQI6 1058 aa21.51■■□□□ 1.03
CLN3-259ENST00000637551 ZSWIM8A7E2V4 1837 aa21.5■■□□□ 1.03
CLN3-259ENST00000637551 TNPO2O14787 897 aaKnown RBP21.5■■□□□ 1.03
CLN3-259ENST00000637551 KDM4AO75164 1064 aa21.5■■□□□ 1.03
CLN3-259ENST00000637551 REC8O95072 547 aa21.5■■□□□ 1.03
CLN3-259ENST00000637551 FMNL1O95466 1100 aaPredicted RBP21.5■■□□□ 1.03
CLN3-259ENST00000637551 OAZ1P54368 228 aa21.5■■□□□ 1.03
CLN3-259ENST00000637551 NECTIN1Q15223 517 aa21.5■■□□□ 1.03
CLN3-259ENST00000637551 SKAP1Q86WV1 359 aa21.5■■□□□ 1.03
CLN3-259ENST00000637551 NCOA7Q8NI08 942 aa21.5■■□□□ 1.03
CLN3-259ENST00000637551 CHURC1Q8WUH1 139 aa21.5■■□□□ 1.03
CLN3-259ENST00000637551 TXNRD2Q9NNW7 524 aa21.5■■□□□ 1.03
CLN3-259ENST00000637551 ANO2Q9NQ90 1003 aa21.5■■□□□ 1.03
CLN3-259ENST00000637551 INCENPQ9NQS7 918 aa21.5■■□□□ 1.03
CLN3-259ENST00000637551 COL11A1P12107 1806 aaPredicted RBP21.5■■□□□ 1.03
CLN3-259ENST00000637551 SNHG28P0DPA3 235 aa21.49■■□□□ 1.03
CLN3-259ENST00000637551 BMP3P12645 472 aa21.49■■□□□ 1.03
CLN3-259ENST00000637551 SLC1A4P43007 532 aa21.49■■□□□ 1.03
CLN3-259ENST00000637551 STAT2P52630 851 aa21.49■■□□□ 1.03
CLN3-259ENST00000637551 TSGA10IPQ3SY00 556 aa21.49■■□□□ 1.03
CLN3-259ENST00000637551 FAM83BQ5T0W9 1011 aa21.49■■□□□ 1.03
CLN3-259ENST00000637551 SLFN13Q68D06 897 aa21.49■■□□□ 1.03
CLN3-259ENST00000637551 RALYLQ86SE5 291 aaKnown RBP21.49■■□□□ 1.03
CLN3-259ENST00000637551 ARMC5Q96C12 935 aa21.49■■□□□ 1.03
CLN3-259ENST00000637551 ZSCAN10Q96SZ4 725 aaPredicted RBP21.49■■□□□ 1.03
CLN3-259ENST00000637551 UBAC1Q9BSL1 405 aa21.49■■□□□ 1.03
CLN3-259ENST00000637551 ZSWIM5Q9P217 1185 aa21.49■■□□□ 1.03
CLN3-259ENST00000637551 PNMA2Q9UL42 364 aa21.49■■□□□ 1.03
CLN3-259ENST00000637551 KIAA0100Q14667 2235 aaKnown RBP21.49■■□□□ 1.03
CLN3-259ENST00000637551 BRCA2P51587 3418 aa21.49■■□□□ 1.03
CLN3-259ENST00000637551 RBBP6Q7Z6E9 1792 aaKnown RBP21.48■■□□□ 1.03
CLN3-259ENST00000637551 B4E1Z4 1266 aa21.48■■□□□ 1.03
CLN3-259ENST00000637551 CNMDO75829 334 aa21.48■■□□□ 1.03
CLN3-259ENST00000637551 SLC25A27O95847 323 aa21.48■■□□□ 1.03
CLN3-259ENST00000637551 SART3Q15020 963 aaKnown RBP21.48■■□□□ 1.03
CLN3-259ENST00000637551 POTEEQ6S8J3 1075 aa21.48■■□□□ 1.03
CLN3-259ENST00000637551 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.48■■□□□ 1.03
CLN3-259ENST00000637551 LRRC47Q8N1G4 583 aaKnown RBP21.48■■□□□ 1.03
CLN3-259ENST00000637551 PXYLP1Q8TE99 480 aa21.48■■□□□ 1.03
CLN3-259ENST00000637551 TMEM47Q9BQJ4 181 aa21.48■■□□□ 1.03
CLN3-259ENST00000637551 ARHGAP39Q9C0H5 1083 aa21.48■■□□□ 1.03
CLN3-259ENST00000637551 E7EWF7 191 aa21.47■■□□□ 1.03
CLN3-259ENST00000637551 VWA5AO00534 786 aa21.47■■□□□ 1.03
CLN3-259ENST00000637551 STRNO43815 780 aa21.47■■□□□ 1.03
CLN3-259ENST00000637551 NMT2O60551 498 aa21.47■■□□□ 1.03
CLN3-259ENST00000637551 XRCC5P13010 732 aaKnown RBP21.47■■□□□ 1.03
CLN3-259ENST00000637551 CAPN2P17655 700 aa21.47■■□□□ 1.03
CLN3-259ENST00000637551 CTGFP29279 349 aa21.47■■□□□ 1.03
CLN3-259ENST00000637551 CAP1Q01518 475 aa21.47■■□□□ 1.03
CLN3-259ENST00000637551 GPATCH4Q5T3I0 446 aaKnown RBP21.47■■□□□ 1.03
CLN3-259ENST00000637551 BTNL9Q6UXG8 535 aa21.47■■□□□ 1.03
CLN3-259ENST00000637551 NBPF11Q86T75 865 aa21.47■■□□□ 1.03
CLN3-259ENST00000637551 TRMT44Q8IYL2 757 aaKnown RBP21.47■■□□□ 1.03
CLN3-259ENST00000637551 ABRAQ8N0Z2 381 aa21.47■■□□□ 1.03
CLN3-259ENST00000637551 SPATC1LQ9H0A9 340 aa21.47■■□□□ 1.03
CLN3-259ENST00000637551 MROH8Q9H579 483 aa21.47■■□□□ 1.03
CLN3-259ENST00000637551 PLXNB2O15031 1838 aa21.46■■□□□ 1.03
CLN3-259ENST00000637551 KRT32Q14532 448 aa21.46■■□□□ 1.03
CLN3-259ENST00000637551 CCAR1Q8IX12 1150 aaKnown RBP21.46■■□□□ 1.03
CLN3-259ENST00000637551 ENAHQ8N8S7 591 aaPredicted RBP21.46■■□□□ 1.03
CLN3-259ENST00000637551 SLAIN1Q8ND83 568 aa21.46■■□□□ 1.03
CLN3-259ENST00000637551 PAGR1Q9BTK6 254 aa21.46■■□□□ 1.03
CLN3-259ENST00000637551 BTBD7Q9P203 1132 aa21.46■■□□□ 1.03
CLN3-259ENST00000637551 TNKSO95271 1327 aa21.46■■□□□ 1.03
CLN3-259ENST00000637551 WDR19Q8NEZ3 1342 aa21.46■■□□□ 1.03
CLN3-259ENST00000637551 RIOX2Q8IUF8 465 aa21.45■■□□□ 1.02
CLN3-259ENST00000637551 REPS2Q8NFH8 660 aa21.45■■□□□ 1.02
CLN3-259ENST00000637551 ATG4CQ96DT6 458 aa21.45■■□□□ 1.02
CLN3-259ENST00000637551 TEX13BQ9BXU2 312 aa21.45■■□□□ 1.02
CLN3-259ENST00000637551 SLC38A10Q9HBR0 1119 aa21.45■■□□□ 1.02
CLN3-259ENST00000637551 ZNF214Q9UL59 606 aaPredicted RBP21.45■■□□□ 1.02
CLN3-259ENST00000637551 SZT2Q5T011 3432 aa21.44■■□□□ 1.02
CLN3-259ENST00000637551 ERICH2A1L162 156 aa21.44■■□□□ 1.02
CLN3-259ENST00000637551 SLC27A2O14975 620 aa21.44■■□□□ 1.02
CLN3-259ENST00000637551 PDHBP11177 359 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms