RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 IFNL3Q8IZI9 196 aa13.87□□□□□ -0.19
CLN3-257ENST00000637110 MYLIPQ8WY64 445 aa13.87□□□□□ -0.19
CLN3-257ENST00000637110 C12orf42Q96LP6 360 aa13.87□□□□□ -0.19
CLN3-257ENST00000637110 TANGO6Q9C0B7 1094 aa13.87□□□□□ -0.19
CLN3-257ENST00000637110 NAPBQ9H115 298 aa13.87□□□□□ -0.19
CLN3-257ENST00000637110 RPAP3Q9H6T3 665 aaPredicted RBP13.87□□□□□ -0.19
CLN3-257ENST00000637110 SALL3Q9BXA9 1300 aa13.87□□□□□ -0.19
CLN3-257ENST00000637110 A0A1W2PRG0 241 aa13.86□□□□□ -0.19
CLN3-257ENST00000637110 SLC3A2P08195 630 aaKnown RBP13.86□□□□□ -0.19
CLN3-257ENST00000637110 SMAD3P84022 425 aaKnown RBP13.86□□□□□ -0.19
CLN3-257ENST00000637110 ZMYM1Q5SVZ6 1142 aa13.86□□□□□ -0.19
CLN3-257ENST00000637110 WDR78Q5VTH9 848 aa13.86□□□□□ -0.19
CLN3-257ENST00000637110 CCDC129Q6ZRS4 1044 aa13.86□□□□□ -0.19
CLN3-257ENST00000637110 ZNF444Q8N0Y2 327 aaPredicted RBP13.86□□□□□ -0.19
CLN3-257ENST00000637110 KANSL2Q9H9L4 492 aa13.86□□□□□ -0.19
CLN3-257ENST00000637110 ZNF287Q9HBT7 754 aa13.86□□□□□ -0.19
CLN3-257ENST00000637110 TXNRD2Q9NNW7 524 aa13.86□□□□□ -0.19
CLN3-257ENST00000637110 RBPJLQ9UBG7 517 aa13.86□□□□□ -0.19
CLN3-257ENST00000637110 MORF4L1Q9UBU8 362 aa13.86□□□□□ -0.19
CLN3-257ENST00000637110 CDH23Q9H251 3354 aa13.86□□□□□ -0.19
CLN3-257ENST00000637110 LTBP2Q14767 1821 aa13.85□□□□□ -0.19
CLN3-257ENST00000637110 FRMPD3Q5JV73 1810 aa13.85□□□□□ -0.19
CLN3-257ENST00000637110 DNAH12Q6ZR08 3092 aa13.85□□□□□ -0.19
CLN3-257ENST00000637110 ERVK-9P63128 1117 aa13.85□□□□□ -0.19
CLN3-257ENST00000637110 ERVK-24P63145 666 aa13.85□□□□□ -0.19
CLN3-257ENST00000637110 NUCB1Q02818 461 aa13.85□□□□□ -0.19
CLN3-257ENST00000637110 CACNB2Q08289 660 aaPredicted RBP13.85□□□□□ -0.19
CLN3-257ENST00000637110 LHX8Q68G74 356 aa13.85□□□□□ -0.19
CLN3-257ENST00000637110 SPICE1Q8N0Z3 855 aa13.85□□□□□ -0.19
CLN3-257ENST00000637110 SENP6Q9GZR1 1112 aaPredicted RBP13.85□□□□□ -0.19
CLN3-257ENST00000637110 EPB41L4AQ9HCS5 686 aaPredicted RBP13.85□□□□□ -0.19
CLN3-257ENST00000637110 TMEM265A0A087WTH1 108 aa13.84□□□□□ -0.19
CLN3-257ENST00000637110 PRDM1O75626 825 aa13.84□□□□□ -0.19
CLN3-257ENST00000637110 EEF2P13639 858 aaKnown RBP13.84□□□□□ -0.19
CLN3-257ENST00000637110 MAPK4P31152 587 aa13.84□□□□□ -0.19
CLN3-257ENST00000637110 CCNA1P78396 465 aa13.84□□□□□ -0.19
CLN3-257ENST00000637110 Q3C1V9 767 aa13.84□□□□□ -0.19
CLN3-257ENST00000637110 HOXC10Q9NYD6 342 aa13.84□□□□□ -0.19
CLN3-257ENST00000637110 TMX2Q9Y320 296 aa13.84□□□□□ -0.19
CLN3-257ENST00000637110 RABGAP1Q9Y3P9 1069 aa13.84□□□□□ -0.19
CLN3-257ENST00000637110 RASA1P20936 1047 aa13.83□□□□□ -0.2
CLN3-257ENST00000637110 CCND3P30281 292 aaPredicted RBP13.83□□□□□ -0.2
CLN3-257ENST00000637110 RGS2P41220 211 aa13.83□□□□□ -0.2
CLN3-257ENST00000637110 PDE4BQ07343 736 aa13.83□□□□□ -0.2
CLN3-257ENST00000637110 COG2Q14746 738 aa13.83□□□□□ -0.2
CLN3-257ENST00000637110 SHHQ15465 462 aa13.83□□□□□ -0.2
CLN3-257ENST00000637110 LPAR1Q92633 364 aa13.83□□□□□ -0.2
CLN3-257ENST00000637110 TTYH1Q9H313 450 aaPredicted RBP13.83□□□□□ -0.2
CLN3-257ENST00000637110 GOPCQ9HD26 462 aa13.83□□□□□ -0.2
CLN3-257ENST00000637110 HELLSQ9NRZ9 838 aa13.83□□□□□ -0.2
CLN3-257ENST00000637110 MSCO60682 206 aa13.82□□□□□ -0.2
CLN3-257ENST00000637110 FLOT1O75955 427 aa13.82□□□□□ -0.2
CLN3-257ENST00000637110 PPARAQ07869 468 aa13.82□□□□□ -0.2
CLN3-257ENST00000637110 PLS1Q14651 629 aa13.82□□□□□ -0.2
CLN3-257ENST00000637110 MCMDC2Q4G0Z9 681 aa13.82□□□□□ -0.2
CLN3-257ENST00000637110 PLEKHH3Q7Z736 793 aa13.82□□□□□ -0.2
CLN3-257ENST00000637110 SIAH1Q8IUQ4 282 aa13.82□□□□□ -0.2
CLN3-257ENST00000637110 PLEKHM2Q8IWE5 1019 aa13.82□□□□□ -0.2
CLN3-257ENST00000637110 APBA2Q99767 749 aa13.82□□□□□ -0.2
CLN3-257ENST00000637110 PORCNQ9H237 461 aa13.82□□□□□ -0.2
CLN3-257ENST00000637110 VCPKMTQ9H867 229 aa13.82□□□□□ -0.2
CLN3-257ENST00000637110 SPDYE16A6NNV3 312 aaPredicted RBP13.81□□□□□ -0.2
CLN3-257ENST00000637110 WDR46O15213 610 aaKnown RBP13.81□□□□□ -0.2
CLN3-257ENST00000637110 TSPY3P0CV98 308 aa13.81□□□□□ -0.2
CLN3-257ENST00000637110 TSPY8P0CW00 308 aa13.81□□□□□ -0.2
CLN3-257ENST00000637110 ATN1P54259 1190 aaPredicted RBP13.81□□□□□ -0.2
CLN3-257ENST00000637110 RTP1P59025 263 aa13.81□□□□□ -0.2
CLN3-257ENST00000637110 NMIQ13287 307 aaPredicted RBP13.81□□□□□ -0.2
CLN3-257ENST00000637110 KIAA1755Q5JYT7 1200 aa13.81□□□□□ -0.2
CLN3-257ENST00000637110 GPR142Q7Z601 462 aa13.81□□□□□ -0.2
CLN3-257ENST00000637110 FAM227BQ96M60 508 aa13.81□□□□□ -0.2
CLN3-257ENST00000637110 TOMM22Q9NS69 142 aa13.81□□□□□ -0.2
CLN3-257ENST00000637110 CLIP2Q9UDT6 1046 aa13.81□□□□□ -0.2
CLN3-257ENST00000637110 RAPGEFL1Q9UHV5 662 aa13.81□□□□□ -0.2
CLN3-257ENST00000637110 ISY1Q9ULR0 285 aaKnown RBP13.81□□□□□ -0.2
CLN3-257ENST00000637110 IVNS1ABPQ9Y6Y0 642 aa13.81□□□□□ -0.2
CLN3-257ENST00000637110 NCOR1O75376 2440 aa13.81□□□□□ -0.2
CLN3-257ENST00000637110 A0A0D9SFI3 127 aa13.8□□□□□ -0.2
CLN3-257ENST00000637110 DNM1LO00429 736 aa13.8□□□□□ -0.2
CLN3-257ENST00000637110 CNMDO75829 334 aa13.8□□□□□ -0.2
CLN3-257ENST00000637110 DSG3P32926 999 aa13.8□□□□□ -0.2
CLN3-257ENST00000637110 TFAP4Q01664 338 aa13.8□□□□□ -0.2
CLN3-257ENST00000637110 CTDSPL2Q05D32 466 aa13.8□□□□□ -0.2
CLN3-257ENST00000637110 FAM47AQ5JRC9 791 aa13.8□□□□□ -0.2
CLN3-257ENST00000637110 C9orf50Q5SZB4 431 aa13.8□□□□□ -0.2
CLN3-257ENST00000637110 VPS53Q5VIR6 699 aa13.8□□□□□ -0.2
CLN3-257ENST00000637110 MFSD14CQ5VZR4 134 aa13.8□□□□□ -0.2
CLN3-257ENST00000637110 DIAPH3Q9NSV4 1193 aa13.8□□□□□ -0.2
CLN3-257ENST00000637110 BTBD7Q9P203 1132 aa13.8□□□□□ -0.2
CLN3-257ENST00000637110 ROBO3Q96MS0 1386 aa13.8□□□□□ -0.2
CLN3-257ENST00000637110 TSPY2A6NKD2 308 aa13.79□□□□□ -0.2
CLN3-257ENST00000637110 SDSP20132 328 aa13.79□□□□□ -0.2
CLN3-257ENST00000637110 FAM83BQ5T0W9 1011 aa13.79□□□□□ -0.2
CLN3-257ENST00000637110 POTEEQ6S8J3 1075 aa13.79□□□□□ -0.2
CLN3-257ENST00000637110 LBX2Q6XYB7 198 aa13.79□□□□□ -0.2
CLN3-257ENST00000637110 USP6NLQ92738 828 aa13.79□□□□□ -0.2
CLN3-257ENST00000637110 ATG4CQ96DT6 458 aa13.79□□□□□ -0.2
CLN3-257ENST00000637110 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.79□□□□□ -0.2
CLN3-257ENST00000637110 OSBPL3Q9H4L5 887 aa13.79□□□□□ -0.2
CLN3-257ENST00000637110 PRDM5Q9NQX1 630 aaPredicted RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms