RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 PRAMEF18Q5VWM3 479 aa21.28■■□□□ 1
CLN3-254ENST00000637050 TMEM87AQ8NBN3 555 aa21.28■■□□□ 1
CLN3-254ENST00000637050 DCPSQ96C86 337 aaKnown RBP21.28■■□□□ 1
CLN3-254ENST00000637050 GMCL1Q96IK5 515 aa21.28■■□□□ 1
CLN3-254ENST00000637050 CPVLQ9H3G5 476 aa21.28■■□□□ 1
CLN3-254ENST00000637050 TMX2Q9Y320 296 aa21.28■■□□□ 1
CLN3-254ENST00000637050 SCN4AP35499 1836 aa21.28■■□□□ 1
CLN3-254ENST00000637050 ATAD5Q96QE3 1844 aa21.28■■□□□ 1
CLN3-254ENST00000637050 U2AF2P26368 475 aaKnown RBP eCLIP21.28■■□□□ 1
CLN3-254ENST00000637050 KRT85P78386 507 aa21.28■■□□□ 1
CLN3-254ENST00000637050 ZC3H15Q8WU90 426 aaKnown RBP21.28■■□□□ 1
CLN3-254ENST00000637050 PHF20Q9BVI0 1012 aa21.28■■□□□ 1
CLN3-254ENST00000637050 GPCPD1Q9NPB8 672 aa21.28■■□□□ 1
CLN3-254ENST00000637050 VPS54Q9P1Q0 977 aa21.28■■□□□ 1
CLN3-254ENST00000637050 KCNJ14Q9UNX9 436 aa21.28■■□□□ 1
CLN3-254ENST00000637050 SSC5DA1L4H1 1573 aa21.27■■□□□ 1
CLN3-254ENST00000637050 TCHHQ07283 1943 aa21.27■■□□□ 1
CLN3-254ENST00000637050 MYH15Q9Y2K3 1946 aa21.27■■□□□ 1
CLN3-254ENST00000637050 PRPF40AO75400 957 aaKnown RBP21.27■■□□□ 1
CLN3-254ENST00000637050 NDUFB10O96000 172 aa21.27■■□□□ 1
CLN3-254ENST00000637050 VEGFAP15692 232 aaPredicted RBP21.27■■□□□ 1
CLN3-254ENST00000637050 ECE1P42892 770 aa21.27■■□□□ 1
CLN3-254ENST00000637050 CCDC96Q2M329 555 aa21.27■■□□□ 1
CLN3-254ENST00000637050 SUPT20HL1Q3ZLR7 823 aa21.27■■□□□ 1
CLN3-254ENST00000637050 ACER1Q8TDN7 264 aa21.27■■□□□ 1
CLN3-254ENST00000637050 PIBF1Q8WXW3 757 aa21.27■■□□□ 1
CLN3-254ENST00000637050 UBA5Q9GZZ9 404 aa21.27■■□□□ 1
CLN3-254ENST00000637050 SH3GLB2Q9NR46 395 aa21.27■■□□□ 1
CLN3-254ENST00000637050 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.27■■□□□ 1
CLN3-254ENST00000637050 WDR90Q96KV7 1748 aa21.27■■□□□ 1
CLN3-254ENST00000637050 IQCA1LA6NCM1 817 aa21.26■□□□□ 0.99
CLN3-254ENST00000637050 NCLP19338 710 aaKnown RBP21.26■□□□□ 0.99
CLN3-254ENST00000637050 SLC1A4P43007 532 aa21.26■□□□□ 0.99
CLN3-254ENST00000637050 SAFBQ15424 915 aaKnown RBP eCLIP21.26■□□□□ 0.99
CLN3-254ENST00000637050 ATL3Q6DD88 541 aa21.26■□□□□ 0.99
CLN3-254ENST00000637050 KCTD1Q719H9 257 aa21.26■□□□□ 0.99
CLN3-254ENST00000637050 SULF1Q8IWU6 871 aa21.26■□□□□ 0.99
CLN3-254ENST00000637050 RRP36Q96EU6 259 aaKnown RBP21.26■□□□□ 0.99
CLN3-254ENST00000637050 GDPD2Q9HCC8 539 aa21.26■□□□□ 0.99
CLN3-254ENST00000637050 POLR2AP24928 1970 aaKnown RBP21.26■□□□□ 0.99
CLN3-254ENST00000637050 POTECB2RU33 542 aa21.25■□□□□ 0.99
CLN3-254ENST00000637050 TTBK2Q6IQ55 1244 aa21.25■□□□□ 0.99
CLN3-254ENST00000637050 USP48Q86UV5 1035 aa21.25■□□□□ 0.99
CLN3-254ENST00000637050 DIS3L2Q8IYB7 885 aaKnown RBP21.25■□□□□ 0.99
CLN3-254ENST00000637050 FAM177A1Q8N128 213 aaPredicted RBP21.25■□□□□ 0.99
CLN3-254ENST00000637050 FOXP1Q9H334 677 aaPredicted RBP21.25■□□□□ 0.99
CLN3-254ENST00000637050 TAF1DQ9H5J8 278 aaPredicted RBP21.25■□□□□ 0.99
CLN3-254ENST00000637050 SH2D4AQ9H788 454 aa21.25■□□□□ 0.99
CLN3-254ENST00000637050 BAZ2BQ9UIF8 2168 aaKnown RBP21.25■□□□□ 0.99
CLN3-254ENST00000637050 INPP5BP32019 993 aa21.24■□□□□ 0.99
CLN3-254ENST00000637050 GOPCQ9HD26 462 aa21.24■□□□□ 0.99
CLN3-254ENST00000637050 TFIP11Q9UBB9 837 aaKnown RBP21.24■□□□□ 0.99
CLN3-254ENST00000637050 DOCK1Q14185 1865 aa21.24■□□□□ 0.99
CLN3-254ENST00000637050 BTBD18B2RXH4 712 aa21.24■□□□□ 0.99
CLN3-254ENST00000637050 FIBPO43427 364 aa21.24■□□□□ 0.99
CLN3-254ENST00000637050 RAD21O60216 631 aa21.24■□□□□ 0.99
CLN3-254ENST00000637050 NPY5RQ15761 445 aa21.24■□□□□ 0.99
CLN3-254ENST00000637050 CSPP1Q1MSJ5 1256 aa21.24■□□□□ 0.99
CLN3-254ENST00000637050 MYSM1Q5VVJ2 828 aa21.24■□□□□ 0.99
CLN3-254ENST00000637050 ZNF396Q96N95 335 aaPredicted RBP21.24■□□□□ 0.99
CLN3-254ENST00000637050 PIGSQ96S52 555 aa21.24■□□□□ 0.99
CLN3-254ENST00000637050 SCAND2PQ9GZW5 306 aaPredicted RBP21.24■□□□□ 0.99
CLN3-254ENST00000637050 JMJD4Q9H9V9 463 aa21.24■□□□□ 0.99
CLN3-254ENST00000637050 VAT1LQ9HCJ6 419 aa21.24■□□□□ 0.99
CLN3-254ENST00000637050 BARHL2Q9NY43 387 aa21.24■□□□□ 0.99
CLN3-254ENST00000637050 CFAP45Q9UL16 551 aa21.24■□□□□ 0.99
CLN3-254ENST00000637050 ADM5C9JUS6 153 aa21.23■□□□□ 0.99
CLN3-254ENST00000637050 TRAK2O60296 914 aa21.23■□□□□ 0.99
CLN3-254ENST00000637050 GNL2Q13823 731 aaKnown RBP21.23■□□□□ 0.99
CLN3-254ENST00000637050 WWC2Q6AWC2 1192 aa21.23■□□□□ 0.99
CLN3-254ENST00000637050 KRT26Q7Z3Y9 468 aa21.23■□□□□ 0.99
CLN3-254ENST00000637050 SCYL3Q8IZE3 742 aa21.23■□□□□ 0.99
CLN3-254ENST00000637050 ADGRF4Q8IZF3 695 aa21.23■□□□□ 0.99
CLN3-254ENST00000637050 GPKOWQ92917 476 aaPredicted RBP eCLIP21.23■□□□□ 0.99
CLN3-254ENST00000637050 KLRG1Q96E93 195 aa21.23■□□□□ 0.99
CLN3-254ENST00000637050 MTMR8Q96EF0 704 aa21.23■□□□□ 0.99
CLN3-254ENST00000637050 WRNIP1Q96S55 665 aa21.23■□□□□ 0.99
CLN3-254ENST00000637050 VCPKMTQ9H867 229 aa21.23■□□□□ 0.99
CLN3-254ENST00000637050 SEC63Q9UGP8 760 aaKnown RBP21.23■□□□□ 0.99
CLN3-254ENST00000637050 STXBP3O00186 592 aa21.22■□□□□ 0.99
CLN3-254ENST00000637050 BMP3P12645 472 aa21.22■□□□□ 0.99
CLN3-254ENST00000637050 SKOR2Q2VWA4 1001 aaPredicted RBP21.22■□□□□ 0.99
CLN3-254ENST00000637050 KIAA1755Q5JYT7 1200 aa21.22■□□□□ 0.99
CLN3-254ENST00000637050 CCDC84Q86UT8 332 aaPredicted RBP21.22■□□□□ 0.99
CLN3-254ENST00000637050 NOSTRINQ8IVI9 506 aa21.22■□□□□ 0.99
CLN3-254ENST00000637050 GLIS2Q9BZE0 524 aaPredicted RBP21.22■□□□□ 0.99
CLN3-254ENST00000637050 ELP1O95163 1332 aa21.22■□□□□ 0.99
CLN3-254ENST00000637050 hCG_1984214I3L0E3 225 aa21.21■□□□□ 0.99
CLN3-254ENST00000637050 KRT2P35908 639 aa21.21■□□□□ 0.99
CLN3-254ENST00000637050 SLC16A2P36021 539 aa21.21■□□□□ 0.99
CLN3-254ENST00000637050 TYW1BQ6NUM6 668 aa21.21■□□□□ 0.99
CLN3-254ENST00000637050 BTNL9Q6UXG8 535 aa21.21■□□□□ 0.99
CLN3-254ENST00000637050 HEATR3Q7Z4Q2 680 aa21.21■□□□□ 0.99
CLN3-254ENST00000637050 HOMER1Q86YM7 354 aa21.21■□□□□ 0.99
CLN3-254ENST00000637050 ZNF713Q8N859 430 aaPredicted RBP21.21■□□□□ 0.99
CLN3-254ENST00000637050 OXER1Q8TDS5 423 aa21.21■□□□□ 0.99
CLN3-254ENST00000637050 USP28Q96RU2 1077 aa21.21■□□□□ 0.99
CLN3-254ENST00000637050 NUP88Q99567 741 aaPredicted RBP21.21■□□□□ 0.99
CLN3-254ENST00000637050 CALML3P27482 149 aa21.21■□□□□ 0.99
CLN3-254ENST00000637050 NLRP5P59047 1200 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms