RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ERC2O15083 957 aa17.82■□□□□ 0.44
CLN3-249ENST00000636685 PGK2P07205 417 aa17.82■□□□□ 0.44
CLN3-249ENST00000636685 UQCRFS1P1P0C7P4 283 aa17.82■□□□□ 0.44
CLN3-249ENST00000636685 ZNF865P0CJ78 1059 aaPredicted RBP17.82■□□□□ 0.44
CLN3-249ENST00000636685 FCER1AP12319 257 aa17.82■□□□□ 0.44
CLN3-249ENST00000636685 KHSRPQ92945 711 aaKnown RBP eCLIP17.82■□□□□ 0.44
CLN3-249ENST00000636685 TINF2Q9BSI4 451 aa17.82■□□□□ 0.44
CLN3-249ENST00000636685 CABP5Q9NP86 173 aa17.82■□□□□ 0.44
CLN3-249ENST00000636685 SERPINB13Q9UIV8 391 aa17.82■□□□□ 0.44
CLN3-249ENST00000636685 PARP14Q460N5 1801 aa17.82■□□□□ 0.44
CLN3-249ENST00000636685 SYNRGQ9UMZ2 1314 aa17.81■□□□□ 0.44
CLN3-249ENST00000636685 A0A1W2PRG0 241 aa17.81■□□□□ 0.44
CLN3-249ENST00000636685 AKR1A1P14550 325 aa17.81■□□□□ 0.44
CLN3-249ENST00000636685 RABGGTBP53611 331 aa17.81■□□□□ 0.44
CLN3-249ENST00000636685 SEPT2Q15019 361 aa17.81■□□□□ 0.44
CLN3-249ENST00000636685 KCNA10Q16322 511 aa17.81■□□□□ 0.44
CLN3-249ENST00000636685 KLHDC9Q8NEP7 349 aa17.81■□□□□ 0.44
CLN3-249ENST00000636685 HERVK_113Q902F9 699 aa17.81■□□□□ 0.44
CLN3-249ENST00000636685 MRS2Q9HD23 443 aa17.81■□□□□ 0.44
CLN3-249ENST00000636685 TRANK1O15050 2925 aa17.8■□□□□ 0.44
CLN3-249ENST00000636685 MYADML2A6NDP7 307 aa17.8■□□□□ 0.44
CLN3-249ENST00000636685 MOXD2PA6NHM9 499 aa17.8■□□□□ 0.44
CLN3-249ENST00000636685 SRGAP3O43295 1099 aa17.8■□□□□ 0.44
CLN3-249ENST00000636685 GPR37L1O60883 481 aa17.8■□□□□ 0.44
CLN3-249ENST00000636685 DSG3P32926 999 aa17.8■□□□□ 0.44
CLN3-249ENST00000636685 SHMT1P34896 483 aa17.8■□□□□ 0.44
CLN3-249ENST00000636685 CDK7P50613 346 aa17.8■□□□□ 0.44
CLN3-249ENST00000636685 IRX5P78411 483 aaPredicted RBP17.8■□□□□ 0.44
CLN3-249ENST00000636685 KIAA1755Q5JYT7 1200 aa17.8■□□□□ 0.44
CLN3-249ENST00000636685 CCSAPQ6IQ19 270 aaPredicted RBP17.8■□□□□ 0.44
CLN3-249ENST00000636685 SAMD1Q6SPF0 538 aaPredicted RBP17.8■□□□□ 0.44
CLN3-249ENST00000636685 MB21D1Q8N884 522 aa17.8■□□□□ 0.44
CLN3-249ENST00000636685 ATG4CQ96DT6 458 aa17.8■□□□□ 0.44
CLN3-249ENST00000636685 MMP19Q99542 508 aa17.8■□□□□ 0.44
CLN3-249ENST00000636685 MEIS3Q99687 375 aa17.8■□□□□ 0.44
CLN3-249ENST00000636685 EHD4Q9H223 541 aa17.8■□□□□ 0.44
CLN3-249ENST00000636685 IL23AQ9NPF7 189 aa17.8■□□□□ 0.44
CLN3-249ENST00000636685 MROH7Q68CQ1 1323 aa17.79■□□□□ 0.44
CLN3-249ENST00000636685 ZNF521Q96K83 1311 aa17.79■□□□□ 0.44
CLN3-249ENST00000636685 CYP2E1P05181 493 aaPredicted RBP17.79■□□□□ 0.44
CLN3-249ENST00000636685 MYOGP15173 224 aa17.79■□□□□ 0.44
CLN3-249ENST00000636685 CYP2C18P33260 490 aa17.79■□□□□ 0.44
CLN3-249ENST00000636685 USP5P45974 858 aa17.79■□□□□ 0.44
CLN3-249ENST00000636685 ZNF792Q3KQV3 632 aa17.79■□□□□ 0.44
CLN3-249ENST00000636685 PPP2R2DQ66LE6 453 aa17.79■□□□□ 0.44
CLN3-249ENST00000636685 RFXAPO00287 272 aa17.78■□□□□ 0.44
CLN3-249ENST00000636685 TLL1O43897 1013 aa17.78■□□□□ 0.44
CLN3-249ENST00000636685 OTOP2Q7RTS6 562 aa17.78■□□□□ 0.44
CLN3-249ENST00000636685 MIGA1Q8NAN2 632 aa17.78■□□□□ 0.44
CLN3-249ENST00000636685 GLT1D1Q96MS3 346 aa17.78■□□□□ 0.44
CLN3-249ENST00000636685 PIH1D3Q9NQM4 214 aaKnown RBP17.78■□□□□ 0.44
CLN3-249ENST00000636685 HDAC5Q9UQL6 1122 aa17.78■□□□□ 0.44
CLN3-249ENST00000636685 BRWD1Q9NSI6 2320 aa17.77■□□□□ 0.44
CLN3-249ENST00000636685 ELP1O95163 1332 aa17.77■□□□□ 0.44
CLN3-249ENST00000636685 FLOT1O75955 427 aa17.77■□□□□ 0.44
CLN3-249ENST00000636685 FGBP02675 491 aa17.77■□□□□ 0.44
CLN3-249ENST00000636685 CYP7A1P22680 504 aa17.77■□□□□ 0.44
CLN3-249ENST00000636685 TMEM132BQ14DG7 1078 aa17.77■□□□□ 0.44
CLN3-249ENST00000636685 VTI1AQ96AJ9 217 aa17.77■□□□□ 0.44
CLN3-249ENST00000636685 SNX27Q96L92 541 aa17.77■□□□□ 0.44
CLN3-249ENST00000636685 MTIF3Q9H2K0 278 aaKnown RBP17.77■□□□□ 0.44
CLN3-249ENST00000636685 CNPY2Q9Y2B0 182 aa17.77■□□□□ 0.44
CLN3-249ENST00000636685 MTCH2Q9Y6C9 303 aa17.77■□□□□ 0.44
CLN3-249ENST00000636685 ARVCFO00192 962 aa17.76■□□□□ 0.43
CLN3-249ENST00000636685 SLC25A27O95847 323 aa17.76■□□□□ 0.43
CLN3-249ENST00000636685 PLCD1P51178 756 aa17.76■□□□□ 0.43
CLN3-249ENST00000636685 TTC39AQ5SRH9 613 aa17.76■□□□□ 0.43
CLN3-249ENST00000636685 TTC6Q86TZ1 520 aa17.76■□□□□ 0.43
CLN3-249ENST00000636685 FAM126BQ8IXS8 530 aa17.76■□□□□ 0.43
CLN3-249ENST00000636685 DIS3Q9Y2L1 958 aaKnown RBP17.76■□□□□ 0.43
CLN3-249ENST00000636685 MCM3APO60318 1980 aa17.76■□□□□ 0.43
CLN3-249ENST00000636685 A0A0U1RQG5 324 aaPredicted RBP17.75■□□□□ 0.43
CLN3-249ENST00000636685 MPHOSPH10O00566 681 aaKnown RBP17.75■□□□□ 0.43
CLN3-249ENST00000636685 ASGR1P07306 291 aa17.75■□□□□ 0.43
CLN3-249ENST00000636685 MRE11P49959 708 aa17.75■□□□□ 0.43
CLN3-249ENST00000636685 KCTD2Q14681 263 aa17.75■□□□□ 0.43
CLN3-249ENST00000636685 KRT40Q6A162 431 aa17.75■□□□□ 0.43
CLN3-249ENST00000636685 SPICE1Q8N0Z3 855 aa17.75■□□□□ 0.43
CLN3-249ENST00000636685 SMC4Q9NTJ3 1288 aa17.75■□□□□ 0.43
CLN3-249ENST00000636685 FAM184BQ9ULE4 1060 aa17.75■□□□□ 0.43
CLN3-249ENST00000636685 UMODL1Q5DID0 1318 aa17.74■□□□□ 0.43
CLN3-249ENST00000636685 NAV1Q8NEY1 1877 aa17.74■□□□□ 0.43
CLN3-249ENST00000636685 TLR3O15455 904 aaKnown RBP17.74■□□□□ 0.43
CLN3-249ENST00000636685 C6orf222P0C671 652 aaPredicted RBP17.74■□□□□ 0.43
CLN3-249ENST00000636685 ZAP70P43403 619 aa17.74■□□□□ 0.43
CLN3-249ENST00000636685 EVX2Q03828 476 aa17.74■□□□□ 0.43
CLN3-249ENST00000636685 ZHX1Q9UKY1 873 aaPredicted RBP17.74■□□□□ 0.43
CLN3-249ENST00000636685 COG5Q9UP83 839 aa17.74■□□□□ 0.43
CLN3-249ENST00000636685 PCDHA11Q9Y5I1 949 aa17.74■□□□□ 0.43
CLN3-249ENST00000636685 MYH8P13535 1937 aa17.73■□□□□ 0.43
CLN3-249ENST00000636685 SMIM22K7EJ46 135 aa17.73■□□□□ 0.43
CLN3-249ENST00000636685 GTPBP6O43824 516 aaPredicted RBP17.73■□□□□ 0.43
CLN3-249ENST00000636685 DUSP11O75319 330 aaKnown RBP17.73■□□□□ 0.43
CLN3-249ENST00000636685 SNAI1O95863 264 aaPredicted RBP17.73■□□□□ 0.43
CLN3-249ENST00000636685 CD4P01730 458 aa17.73■□□□□ 0.43
CLN3-249ENST00000636685 CST5P28325 142 aaPredicted RBP17.73■□□□□ 0.43
CLN3-249ENST00000636685 MTX1Q13505 466 aa17.73■□□□□ 0.43
CLN3-249ENST00000636685 RIOX2Q8IUF8 465 aa17.73■□□□□ 0.43
CLN3-249ENST00000636685 DBNDD2Q9BQY9 259 aa17.73■□□□□ 0.43
CLN3-249ENST00000636685 CERS4Q9HA82 394 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms