RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 RTP1P59025 263 aa19.38■□□□□ 0.69
CLN3-246ENST00000636228 LRIT3Q3SXY7 679 aa19.38■□□□□ 0.69
CLN3-246ENST00000636228 NUP88Q99567 741 aaPredicted RBP19.38■□□□□ 0.69
CLN3-246ENST00000636228 SEPT4O43236 478 aa19.37■□□□□ 0.69
CLN3-246ENST00000636228 ABRAQ8N0Z2 381 aa19.37■□□□□ 0.69
CLN3-246ENST00000636228 DEFB123Q8N688 67 aa19.37■□□□□ 0.69
CLN3-246ENST00000636228 ARRDC4Q8NCT1 418 aa19.37■□□□□ 0.69
CLN3-246ENST00000636228 MMP19Q99542 508 aa19.37■□□□□ 0.69
CLN3-246ENST00000636228 MKNK2Q9HBH9 465 aa19.37■□□□□ 0.69
CLN3-246ENST00000636228 GOPCQ9HD26 462 aa19.37■□□□□ 0.69
CLN3-246ENST00000636228 SLC5A4Q9NY91 659 aa19.37■□□□□ 0.69
CLN3-246ENST00000636228 ARPP21Q9UBL0 812 aaPredicted RBP19.37■□□□□ 0.69
CLN3-246ENST00000636228 ADAMTS5Q9UNA0 930 aa19.37■□□□□ 0.69
CLN3-246ENST00000636228 ATP11BQ9Y2G3 1177 aa19.37■□□□□ 0.69
CLN3-246ENST00000636228 VWA5AO00534 786 aa19.36■□□□□ 0.69
CLN3-246ENST00000636228 SLC25A27O95847 323 aa19.36■□□□□ 0.69
CLN3-246ENST00000636228 RASA1P20936 1047 aa19.36■□□□□ 0.69
CLN3-246ENST00000636228 SLC39A5Q6ZMH5 540 aa19.36■□□□□ 0.69
CLN3-246ENST00000636228 KBTBD3Q8NAB2 608 aa19.36■□□□□ 0.69
CLN3-246ENST00000636228 SLC17A8Q8NDX2 589 aa19.36■□□□□ 0.69
CLN3-246ENST00000636228 FERMT2Q96AC1 680 aa19.36■□□□□ 0.69
CLN3-246ENST00000636228 DCTPP1Q9H773 170 aa19.36■□□□□ 0.69
CLN3-246ENST00000636228 PPP1R9AQ9ULJ8 1098 aa19.36■□□□□ 0.69
CLN3-246ENST00000636228 KBTBD13C9JR72 458 aa19.35■□□□□ 0.69
CLN3-246ENST00000636228 RNF113AO15541 343 aaKnown RBP19.35■□□□□ 0.69
CLN3-246ENST00000636228 TAL1P17542 331 aaPredicted RBP19.35■□□□□ 0.69
CLN3-246ENST00000636228 STAT3P40763 770 aa19.35■□□□□ 0.69
CLN3-246ENST00000636228 ADCYAP1R1P41586 468 aa19.35■□□□□ 0.69
CLN3-246ENST00000636228 SBK1Q52WX2 424 aa19.35■□□□□ 0.69
CLN3-246ENST00000636228 FAM47AQ5JRC9 791 aa19.35■□□□□ 0.69
CLN3-246ENST00000636228 RIOX2Q8IUF8 465 aa19.35■□□□□ 0.69
CLN3-246ENST00000636228 LBHD1Q9BQE6 289 aaPredicted RBP19.35■□□□□ 0.69
CLN3-246ENST00000636228 EPB41L4AQ9HCS5 686 aaPredicted RBP19.35■□□□□ 0.69
CLN3-246ENST00000636228 RLFQ13129 1914 aa19.35■□□□□ 0.69
CLN3-246ENST00000636228 BAZ2AQ9UIF9 1905 aaKnown RBP19.34■□□□□ 0.69
CLN3-246ENST00000636228 M0R2C6 588 aa19.34■□□□□ 0.69
CLN3-246ENST00000636228 PRDM1O75626 825 aa19.34■□□□□ 0.69
CLN3-246ENST00000636228 SLC4A3P48751 1232 aa19.34■□□□□ 0.69
CLN3-246ENST00000636228 LRRC41Q15345 812 aa19.34■□□□□ 0.69
CLN3-246ENST00000636228 REPS2Q8NFH8 660 aa19.34■□□□□ 0.69
CLN3-246ENST00000636228 APPBP2Q92624 585 aa19.34■□□□□ 0.69
CLN3-246ENST00000636228 CLIP2Q9UDT6 1046 aa19.34■□□□□ 0.69
CLN3-246ENST00000636228 ZNF214Q9UL59 606 aaPredicted RBP19.34■□□□□ 0.69
CLN3-246ENST00000636228 F5H6K3 240 aa19.33■□□□□ 0.68
CLN3-246ENST00000636228 GPAA1O43292 621 aa19.33■□□□□ 0.68
CLN3-246ENST00000636228 APPP05067 770 aa19.33■□□□□ 0.68
CLN3-246ENST00000636228 KLRC3Q07444 240 aa19.33■□□□□ 0.68
CLN3-246ENST00000636228 KCTD2Q14681 263 aa19.33■□□□□ 0.68
CLN3-246ENST00000636228 ZNF792Q3KQV3 632 aa19.33■□□□□ 0.68
CLN3-246ENST00000636228 GPATCH3Q96I76 525 aa19.33■□□□□ 0.68
CLN3-246ENST00000636228 PRDM5Q9NQX1 630 aaPredicted RBP19.33■□□□□ 0.68
CLN3-246ENST00000636228 PRKAG2Q9UGJ0 569 aa19.33■□□□□ 0.68
CLN3-246ENST00000636228 A0A0G2JMZ2 1700 aa19.33■□□□□ 0.68
CLN3-246ENST00000636228 NDUFB10O96000 172 aa19.32■□□□□ 0.68
CLN3-246ENST00000636228 TDO2P48775 406 aa19.32■□□□□ 0.68
CLN3-246ENST00000636228 TRIM60Q495X7 471 aa19.32■□□□□ 0.68
CLN3-246ENST00000636228 GPR153Q6NV75 609 aa19.32■□□□□ 0.68
CLN3-246ENST00000636228 GIMAP6Q6P9H5 292 aa19.32■□□□□ 0.68
CLN3-246ENST00000636228 OTUD7AQ8TE49 926 aaPredicted RBP19.32■□□□□ 0.68
CLN3-246ENST00000636228 SEC62Q99442 399 aaKnown RBP19.32■□□□□ 0.68
CLN3-246ENST00000636228 NYAP2Q9P242 653 aa19.32■□□□□ 0.68
CLN3-246ENST00000636228 RIPK3Q9Y572 518 aa19.32■□□□□ 0.68
CLN3-246ENST00000636228 PGK1P00558 417 aa19.31■□□□□ 0.68
CLN3-246ENST00000636228 SH3RF1Q7Z6J0 888 aa19.31■□□□□ 0.68
CLN3-246ENST00000636228 LENG1Q96BZ8 264 aaPredicted RBP19.31■□□□□ 0.68
CLN3-246ENST00000636228 SLF1Q9BQI6 1058 aa19.31■□□□□ 0.68
CLN3-246ENST00000636228 TINF2Q9BSI4 451 aa19.31■□□□□ 0.68
CLN3-246ENST00000636228 XPNPEP3Q9NQH7 507 aa19.31■□□□□ 0.68
CLN3-246ENST00000636228 MTMR10Q9NXD2 777 aa19.31■□□□□ 0.68
CLN3-246ENST00000636228 ZNF236Q9UL36 1845 aa19.3■□□□□ 0.68
CLN3-246ENST00000636228 IGKV6D-41A0A0C4DH26 115 aa19.3■□□□□ 0.68
CLN3-246ENST00000636228 SNRNP48Q6IEG0 339 aaKnown RBP19.3■□□□□ 0.68
CLN3-246ENST00000636228 IFNL3Q8IZI9 196 aa19.3■□□□□ 0.68
CLN3-246ENST00000636228 ZNF444Q8N0Y2 327 aaPredicted RBP19.3■□□□□ 0.68
CLN3-246ENST00000636228 CPXCR1Q8N123 301 aa19.3■□□□□ 0.68
CLN3-246ENST00000636228 CHMP4CQ96CF2 233 aa19.3■□□□□ 0.68
CLN3-246ENST00000636228 PCDHB15Q9Y5E8 787 aa19.3■□□□□ 0.68
CLN3-246ENST00000636228 FRMPD3Q5JV73 1810 aa19.3■□□□□ 0.68
CLN3-246ENST00000636228 PATL2C9JE40 543 aaKnown RBP19.29■□□□□ 0.68
CLN3-246ENST00000636228 ZFYP08048 801 aaPredicted RBP19.29■□□□□ 0.68
CLN3-246ENST00000636228 ZNF865P0CJ78 1059 aaPredicted RBP19.29■□□□□ 0.68
CLN3-246ENST00000636228 RARBP10826 455 aa19.29■□□□□ 0.68
CLN3-246ENST00000636228 BADQ92934 168 aa19.29■□□□□ 0.68
CLN3-246ENST00000636228 KIFC2Q96AC6 838 aa19.29■□□□□ 0.68
CLN3-246ENST00000636228 CEP95Q96GE4 821 aa19.29■□□□□ 0.68
CLN3-246ENST00000636228 TRIM43BA6NCK2 446 aa19.28■□□□□ 0.68
CLN3-246ENST00000636228 GNAT2P19087 354 aa19.28■□□□□ 0.68
CLN3-246ENST00000636228 LRRC47Q8N1G4 583 aaKnown RBP19.28■□□□□ 0.68
CLN3-246ENST00000636228 PRPF38AQ8NAV1 312 aaKnown RBP19.28■□□□□ 0.68
CLN3-246ENST00000636228 TRIM43Q96BQ3 446 aaPredicted RBP19.28■□□□□ 0.68
CLN3-246ENST00000636228 DDX11Q96FC9 970 aa19.28■□□□□ 0.68
CLN3-246ENST00000636228 FAM161BQ96MY7 647 aa19.28■□□□□ 0.68
CLN3-246ENST00000636228 TEX13BQ9BXU2 312 aa19.28■□□□□ 0.68
CLN3-246ENST00000636228 RAVER2Q9HCJ3 691 aaKnown RBP19.28■□□□□ 0.68
CLN3-246ENST00000636228 PDLIM7Q9NR12 457 aa19.28■□□□□ 0.68
CLN3-246ENST00000636228 DIS3Q9Y2L1 958 aaKnown RBP19.28■□□□□ 0.68
CLN3-246ENST00000636228 ROBO3Q96MS0 1386 aa19.28■□□□□ 0.68
CLN3-246ENST00000636228 DNAH12Q6ZR08 3092 aa19.27■□□□□ 0.68
CLN3-246ENST00000636228 ZBED4O75132 1171 aa19.27■□□□□ 0.68
CLN3-246ENST00000636228 TLE2Q04725 743 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 109.5 ms